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Report for Sequence Feature Glyma.19g120600

Feature Type:gene_model
Chromosome:Gm19
Start:37842107
stop:37852885
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g120600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G74040.1AT 2-isopropylmalate synthase 1 JGI N/AIEA
GO:0009098GO-bp leucine biosynthetic process EnsemblGenomesN/AIEA
GO:0009098GO-bp leucine biosynthetic process JGI N/AIEA
GO:0019752GO-bp carboxylic acid metabolic process EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0003852GO-mf 2-isopropylmalate synthase activity EnsemblGenomesN/AIEA
GO:0003852GO-mf 2-isopropylmalate synthase activity JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0046912GO-mf transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer EnsemblGenomesN/AIEA
KOG2367 KOG Alpha-isopropylmalate synthase/homocitrate synthase JGI N/AIEA
PTHR10277Panther HOMOCITRATE SYNTHASE-RELATED JGI N/AIEA
PTHR10277:SF9Panther 2-ISOPROPYLMALATE SYNTHASE 1, CHLOROPLASTIC-RELATED JGI N/AIEA
PF00682PFAM HMGL-like JGI N/AIEA
PF08502PFAM LeuA allosteric (dimerisation) domain JGI N/AIEA
BRANCHED-CHAIN-AA-SYN-PWYSoyCyc9 superpathway of branched chain amino acid biosynthesis Plant Metabolic Network ISS
LEUSYN-PWYSoyCyc9 L-leucine biosynthesis Plant Metabolic Network ISS
GN7V-52762SoyCyc9-rxn 2-isopropylmalate synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g120600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g120600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g29920 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g120600
>Glyma.19g120600.1 sequence-type=CDS polypeptide=Glyma.19g120600.1.p locus=Glyma.19g120600 ID=Glyma.19g120600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGGTAAAACATCTACCGACGGCACTCATCCTCGTTCTCGTCCTGAATACATTCCCAATCACATTCCCGACCCGTCATATGTCCGCATCCTGGACACCACCCTTCGCGATGGCGAGCAATCTCCCGGAGCTGCCATGACGTCCGATCAGAAGCTCGGGATTGCTCGCCAACTCGTGAAGTTGGGCGTGGACATCATCGATGCCGGTTTCCCTTCGGCGTCACAGGAAGACTTCAACGCTGTCAAGATGATAGCGCAAGAAGTTGGCAATGACTGTGACGCTGATGGGTATGTTCCAGTCATTGCTGCACTATGTAGGTGCAATGAGAAGGACATTACCACAGCGTGGGAGGCTGTGAGATACGCTAAGAAGCCAAGGCTAATACCTTTCATTGCAACCAGTTCGATTCACATGGAGTATAAGCTCAATAAGACTAAAGAAGAGGTGCTTCAAATTGCTATCGACATGGTCAAGTTTACACGCAGTTTAGGTTGTGATGACATCGAGTTCGGTGTTGAAGATGCAGCCAGATCCGATACAGAGTTTCTTTATAAAATTTTGGAAGAAGTTATCAAAGCTGGGGCAACAACTCTGTGCATAGCTGATACTGTGGGCATAACAATGCCATTAGAGTTTGGAGAAATGATTGCTGGTATAAAAGCCAACGTCCCTGGAGTTGAAAATGCTATTATTTCTGTTCATTGTCATAATGATCTAGGACATGCTACTGCAAATACAATACAGGCTGCCTGTGTTGGTGCAAGACAATTAGAAGTAACAATTAATGGGATTGGTGAAAGGGCCGGTAATGCTGCATTCGAAGAGGTTGTGATGGCCCTAAAATGCAGGGGAGATCATGCCTTAGGTGGTCTTTATACTGGAATCAATACAAGACACATATTAAAGACAAGCAGGATGGTCGAAGAGTGCTCTGGTATGTATTTACAACCACACAAAGCTCTTGTCGGTGATAATTCTTTTCTCCATGAAAGTGGCATTCATCAGGCTGGATTGTTGAAGCACAGAGGAACATATGAAATAATATCTCCGGAAGATATTGGTCATGAAAGGTCCAATGGAGCTAATATGGTACTAGGGAAGCTAAGTGGACGCCACGCGTTGAAAAATCGACTCCAAGAGCTTGGTTATGAACTTAGGGATGATGAATTAGAGAGTGTGTTTCGGAACTTCAAAGCAATGGCTGGAAAAAAGAAGAGAGTTACTGATGTTGACCTTAAGGCATTGGTATCAGATCAAGTTTGTCATGTAGAACCTATTTGGAAGCTTGATGATTTGCAGGTGACTTGTGGAACTATGGGTTCTTCAACAGCATCTGTCAAACTTGTTACTGTTCATGGTAGCACACATGTTGCTTGTTCTGTTGGTGTGGGACCAGTGGATGCAGCTTACAAGGCTATTGATCTCATTGTGAAGGAAACTGTAAAAGTACTTGAGTATACACTGAATCCAGTTACAGAGGGAACTGATGCAATTGCAACTACACGTATTGTAATTCGTAGAGAAAACAACAAAACACTTACTCATGCTTTGAATGGAAACTTTGTTTATCCAACATTTAGTGGGACTGGAGAAGGAGTGGATGTTGTTGTTTCTAGTGTGGAGGCTTATCTTACAGCACTAAACAAAATGCTCGATTTCAAGGACTGA
Predicted protein sequences of Glyma.19g120600
>Glyma.19g120600.1.p sequence-type=predicted peptide transcript=Glyma.19g120600.1 locus=Glyma.19g120600 ID=Glyma.19g120600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAGKTSTDGTHPRSRPEYIPNHIPDPSYVRILDTTLRDGEQSPGAAMTSDQKLGIARQLVKLGVDIIDAGFPSASQEDFNAVKMIAQEVGNDCDADGYVPVIAALCRCNEKDITTAWEAVRYAKKPRLIPFIATSSIHMEYKLNKTKEEVLQIAIDMVKFTRSLGCDDIEFGVEDAARSDTEFLYKILEEVIKAGATTLCIADTVGITMPLEFGEMIAGIKANVPGVENAIISVHCHNDLGHATANTIQAACVGARQLEVTINGIGERAGNAAFEEVVMALKCRGDHALGGLYTGINTRHILKTSRMVEECSGMYLQPHKALVGDNSFLHESGIHQAGLLKHRGTYEIISPEDIGHERSNGANMVLGKLSGRHALKNRLQELGYELRDDELESVFRNFKAMAGKKKRVTDVDLKALVSDQVCHVEPIWKLDDLQVTCGTMGSSTASVKLVTVHGSTHVACSVGVGPVDAAYKAIDLIVKETVKVLEYTLNPVTEGTDAIATTRIVIRRENNKTLTHALNGNFVYPTFSGTGEGVDVVVSSVEAYLTALNKMLDFKD*






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