Glyma.19g116600

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Report for Sequence Feature Glyma.19g116600

Feature Type:	gene_model
Chromosome:	Gm19
Start:	37203584
stop:	37206478
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g116600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80750.1	AT	Ribosomal protein L30/L7 family protein	JGI	N/A	IEA
GO:0000463	GO-bp	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	EnsemblGenomes	N/A	IEA
GO:0002181	GO-bp	cytoplasmic translation	EnsemblGenomes	N/A	IEA
GO:0022625	GO-cc	cytosolic large ribosomal subunit	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
GO:0003735	GO-mf	structural constituent of ribosome	EnsemblGenomes	N/A	IEA
KOG3184	KOG	60S ribosomal protein L7	JGI	N/A	IEA
PTHR11524	Panther	60S RIBOSOMAL PROTEIN L7	JGI	N/A	IEA
PF00327	PFAM	Ribosomal protein L30p/L7e	JGI	N/A	IEA
PF08079	PFAM	Ribosomal L30 N-terminal domain	JGI	N/A	IEA

Expression Patterns of Glyma.19g116600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g116600 not represented in the dataset	Glyma.19g116600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g116600

Paralog	Evidence	Comments
Glyma.16g036200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g116600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g29460	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g116600

Limit To All Plant Sequences

>Glyma.19g116600.2 sequence-type=transcript locus=Glyma.19g116600 ID=Glyma.19g116600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAGAAAATCAATGCATACTTTAGGGCTGCAGGTTCGTGCTTTCCCGCCGCCGCTATACTGCCACCGTCTCCGCCAGCGATGGCAGAAGATGATTCAAAGCCTCTGAACTACATCTCCGAAGTCATACTCAAGAAGAGGAAAAGCACCGAAGCATGGGCGTTAAGGAAAAAAGAACAGTTCCAGCAAAAGAAATTCCAATCCATCAGAAAGCCCGAGGATTTCATCCACGAGTATCGCAACAAGGTAACTAACTCACTCACTTCTCATCACATCGTAACTCGTTTGCGATTAATCGCTAAACCTAAAAAGCGTTTGATGTACCAACGGGATTGGGTCTAGCGGAAAGGGTTAGTCTCCCACAACAGGAAAGGTTCGAATCCCGCTGGAAGAGGTGCCCACATCTAGTGTCCGACCGTGCCTCGAACAGAATTGCCTCCTTTGGAGGAAACCTGAAGTGGACCTTATAAGAATGAAGCGGAGGGTGAAGAGGAAAGTGCCTGAAGCTAACTCCAACACTATGATAATCATTCGGATACAGGGGAAAAAAGACATGCATCCTAGGACTAGGAAGGTGTTGTACAGCTTGGGGTTGAGGAGAAGGTTCAGTGCTGTGTTTGTGAAGCCAAGTGAGGGAATAATGGCCAAGCTGCAGAGGGTGGAACCATATGTCACCTATGGATATCCTAATCTTAAAAGCATAAAGGAGCTAATTTACAAAAAAGGACATGCAAGGATGGAACAGCGAAAAGTTCCCTTGACGGATAATAACATTATTGAGCAGGAATTAGGAAAGTTCGGTATTGTATGCATAGAAGACATGGTTCATCAGATTTATAATGCTGGTCCACACTTTAAGGAAGTTGCCAGATTTATGTGGCCCTTTGAGCTGAACAAGCCAGCTGAAGGATTGAAAGGATCAAAAACCATATTCAAGGAAGGTGGAGACACAGGGAACCGTGAGGATCTCATCAATGAACTAATCAATAAAATGAATTAGTGGCCTTTTGTAGTATCAAAATTTTGATGTTTACTATGTCCATTGGATGATCCTAGGTGCAATATCTCATTTTTGAAGTAATCAATTTATTACCTAGAGAAACATTGCCACAGGTTCTTGTTATAGTTGAGTTTTAAGTGTGTATTTATCTTTACAGTCTTCATTTACTTATTGAATTCCATTAGGCATTGGAATGGGGTGGGGTGGAGAAGAAAGGGACGGGCATGGTGTGCTGTGGGGCTTGAATCTGAATTCTCAATATATTTTTAATGTCATGAACGATGATTCAAGTCCGAATGTGATTTTCATTAAGGTGGACAGAAATGGAATATCTGAATATATGAAGAACATTATTGTTGAAGGATCTTAGCCTTGTTTGTTTGTGAGGTTCAATTACGGATTTGAAACTTTAATTTATCTCAGAATCTTAAATATGTTGTATATTTATTGACTTAATCTGTGCTCATCACTCACATTCGCAAGCTCTGTTAAATAATGACAAACTCAGTTACAATCGAAAATTTGTTCTATTTTAGCTGTTTGATTC

Coding sequences of Glyma.19g116600

Limit To All Plant Sequences

>Glyma.19g116600.1 sequence-type=CDS polypeptide=Glyma.19g116600.1.p locus=Glyma.19g116600 ID=Glyma.19g116600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGAAGATGATTCAAAGCCTCTGAACTACATCTCCGAAGTCATACTCAAGAAGAGGAAAAGCACCGAAGCATGGGCGTTAAGGAAAAAAGAACAGTTCCAGCAAAAGAAATTCCAATCCATCAGAAAGCCCGAGGATTTCATCCACGAGTATCGCAACAAGGAAGTGGACCTTATAAGAATGAAGCGGAGGGTGAAGAGGAAAGTGCCTGAAGCTAACTCCAACACTATGATAATCATTCGGATACAGGGGAAAAAAGACATGCATCCTAGGACTAGGAAGGTGTTGTACAGCTTGGGGTTGAGGAGAAGGTTCAGTGCTGTGTTTGTGAAGCCAAGTGAGGGAATAATGGCCAAGCTGCAGAGGGTGGAACCATATGTCACCTATGGATATCCTAATCTTAAAAGCATAAAGGAGCTAATTTACAAAAAAGGACATGCAAGGATGGAACAGCGAAAAGTTCCCTTGACGGATAATAACATTATTGAGCAGGAATTAGGAAAGTTCGGTATTGTATGCATAGAAGACATGGTTCATCAGATTTATAATGCTGGTCCACACTTTAAGGAAGTTGCCAGATTTATGTGGCCCTTTGAGCTGAACAAGCCAGCTGAAGGATTGAAAGGATCAAAAACCATATTCAAGGAAGGTGGAGACACAGGGAACCGTGAGGATCTCATCAATGAACTAATCAATAAAATGAATTAG

>Glyma.19g116600.2 sequence-type=CDS polypeptide=Glyma.19g116600.2.p locus=Glyma.19g116600 ID=Glyma.19g116600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGCGGAGGGTGAAGAGGAAAGTGCCTGAAGCTAACTCCAACACTATGATAATCATTCGGATACAGGGGAAAAAAGACATGCATCCTAGGACTAGGAAGGTGTTGTACAGCTTGGGGTTGAGGAGAAGGTTCAGTGCTGTGTTTGTGAAGCCAAGTGAGGGAATAATGGCCAAGCTGCAGAGGGTGGAACCATATGTCACCTATGGATATCCTAATCTTAAAAGCATAAAGGAGCTAATTTACAAAAAAGGACATGCAAGGATGGAACAGCGAAAAGTTCCCTTGACGGATAATAACATTATTGAGCAGGAATTAGGAAAGTTCGGTATTGTATGCATAGAAGACATGGTTCATCAGATTTATAATGCTGGTCCACACTTTAAGGAAGTTGCCAGATTTATGTGGCCCTTTGAGCTGAACAAGCCAGCTGAAGGATTGAAAGGATCAAAAACCATATTCAAGGAAGGTGGAGACACAGGGAACCGTGAGGATCTCATCAATGAACTAATCAATAAAATGAATTAG

Predicted protein sequences of Glyma.19g116600

Limit To All Plant Sequences

>Glyma.19g116600.1.p sequence-type=predicted peptide transcript=Glyma.19g116600.1 locus=Glyma.19g116600 ID=Glyma.19g116600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEDDSKPLNYISEVILKKRKSTEAWALRKKEQFQQKKFQSIRKPEDFIHEYRNKEVDLIRMKRRVKRKVPEANSNTMIIIRIQGKKDMHPRTRKVLYSLGLRRRFSAVFVKPSEGIMAKLQRVEPYVTYGYPNLKSIKELIYKKGHARMEQRKVPLTDNNIIEQELGKFGIVCIEDMVHQIYNAGPHFKEVARFMWPFELNKPAEGLKGSKTIFKEGGDTGNREDLINELINKMN*

>Glyma.19g116600.2.p sequence-type=predicted peptide transcript=Glyma.19g116600.2 locus=Glyma.19g116600 ID=Glyma.19g116600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKRRVKRKVPEANSNTMIIIRIQGKKDMHPRTRKVLYSLGLRRRFSAVFVKPSEGIMAKLQRVEPYVTYGYPNLKSIKELIYKKGHARMEQRKVPLTDNNIIEQELGKFGIVCIEDMVHQIYNAGPHFKEVARFMWPFELNKPAEGLKGSKTIFKEGGDTGNREDLINELINKMN*

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