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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G31220.1 | AT | Formyl transferase | JGI | N/A | IEA |
| GO:0006164 | GO-bp | purine nucleotide biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006189 | GO-bp | 'de novo' IMP biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | JGI | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0009536 | GO-cc | plastid | EnsemblGenomes | N/A | IEA |
| GO:0004644 | GO-mf | phosphoribosylglycinamide formyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016742 | GO-mf | hydroxymethyl-, formyl- and related transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016742 | GO-mf | hydroxymethyl-, formyl- and related transferase activity | JGI | N/A | IEA |
| KOG3076 | KOG | 5'-phosphoribosylglycinamide formyltransferase | JGI | N/A | IEA |
| PTHR10520 | Panther | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED | JGI | N/A | IEA |
| PF00551 | PFAM | Formyl transferase | JGI | N/A | IEA |
| PWY-6121 | SoyCyc9 | 5-aminoimidazole ribonucleotide biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-6613 | SoyCyc9 | tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate | Plant Metabolic Network | ISS | |
| PWY-841 | SoyCyc9 | superpathway of purine nucleotides de novo biosynthesis I | Plant Metabolic Network | ISS | |
| GN7V-60562 | SoyCyc9-rxn | phosphoribosylglycinamide formyltransferase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| PUR3 | glycinamide ribonucleotide transformylase |
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Glyma.19g115900 not represented in the dataset |
Glyma.19g115900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.16g037200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g29380 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g115900.1 sequence-type=CDS polypeptide=Glyma.19g115900.1.p locus=Glyma.19g115900 ID=Glyma.19g115900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCCATGGAAGCTCAACAGATTCTTTCCAGATTCTGTCCAAAACCATCTTCAGTGCCATCTATTCCAATTGTGAAACAACAATTCTCTCCAAAGTTCCCTCGTTTACCTTCTTCATCGTTGTATCCTTCTAGTCAATCTCAGAATCTCAATGTTCCTAGTGGAGCTTTCCATCCTATCAGCATTGTGCACAAAGAAGTGTGTTCTAGTTCTTGCAAGAGGATATGGTGCAGCAGCAGCAGCAGCAGCACTGCAGAACCAAAGGAGGGCCATGAGGTGAGGGCTCAGGTCACCGTGCGAAGGAAAAAGCTAGCAGTTTTCGTTTCTGGTGGAGGATCCAACTTCAGAGCAATTCATGAGGCCTCCAAAAGGGGATCACTTCATGGAGATGTTCTTGTGTTGGTCACAAATAAAAGTGATTGTGGAGGTGCGGAGTATGCAAGAAATAATGGTATCCCAGTTATACTGTACCATATATCAAAGGATGAATCTAATCCAAGTGACCTTGTTGATACACTAAGGAAATTTGAGGTTGATTTTATTCTTTTAGCTGGATACCTCAAACTTATACCAGTGGAATTGATCCGAGCTTACAAAAGATCTATATTCAACATTCATCCATCACTTCTTCCAGCTTTTGGAGGCAAGGGATTCTATGGCATGAAAGTGCACAAAGCAGTAATTGCTTCTGGAGCAAGGTTTTCAGGTCCTACCATTCATTTTGTTGATGAACACTATGATACAGGGCGTATCCTTGCACAGCGTGTTGTCCCTGTGCTTGCCAATGATACTGTAGAAGAGCTGGCTGCAAGGGTTCTCAAAGAGGAGCACCAATTATATGTGGAGGTGGTGGAGGCTTTATGCGAAGAACGTGTGGTTTGGAGGCAAGATGGTGTTCCTCTCATCCAAAGCAAAGAAAACCCCAATGAGTTTCGCTGA
>Glyma.19g115900.1.p sequence-type=predicted peptide transcript=Glyma.19g115900.1 locus=Glyma.19g115900 ID=Glyma.19g115900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSMEAQQILSRFCPKPSSVPSIPIVKQQFSPKFPRLPSSSLYPSSQSQNLNVPSGAFHPISIVHKEVCSSSCKRIWCSSSSSSTAEPKEGHEVRAQVTVRRKKLAVFVSGGGSNFRAIHEASKRGSLHGDVLVLVTNKSDCGGAEYARNNGIPVILYHISKDESNPSDLVDTLRKFEVDFILLAGYLKLIPVELIRAYKRSIFNIHPSLLPAFGGKGFYGMKVHKAVIASGARFSGPTIHFVDEHYDTGRILAQRVVPVLANDTVEELAARVLKEEHQLYVEVVEALCEERVVWRQDGVPLIQSKENPNEFR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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