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Report for Sequence Feature Glyma.19g113500

Feature Type:gene_model
Chromosome:Gm19
Start:36790273
stop:36794234
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g113500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G20950.1AT Glycosyl hydrolase family protein JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0009251GO-bp glucan catabolic process EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds JGI N/AIEA
GO:0008422GO-mf beta-glucosidase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
PF00933PFAM Glycosyl hydrolase family 3 N terminal domain JGI N/AIEA
PF01915PFAM Glycosyl hydrolase family 3 C-terminal domain JGI N/AIEA
GN7V-48865SoyCyc9-rxn glucan 1,3-β-glucosidase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g113500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g113500
ParalogEvidenceComments
Glyma.16g039400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g113500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g29050 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g113500
>Glyma.19g113500.2 sequence-type=transcript locus=Glyma.19g113500 ID=Glyma.19g113500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTTGAACAAGTTTAGACATAGGATATTTTAATTTTAAAAAAATGTGTTTGAATGCTCGTTCTATAAGCCTATGAGTCTGAGTCTCAAATACCTTCAATGGATCTGGAGGGAATGGCTAAAATCTCCATCTTGTTGGTGGGGCTTTGGCTACTAGTTAACTGGTCAGGGTTGTTGGATGCAAAAAACATGAAGTACAAGAACCCTAAACACTCAACTGATACTCGGGTTGAGGATCTTGTTAGCAGGATGACTCTTGAGGAGAAAATTGGCCAAATGTTGCAGGTTGAGCGCAAGTATGTATCTGCTGATTTACTTAAGAAGTATTTTATTGGGGCTGTATTGAGTGAGGGAGGGAGTATTCCAGCTCCACAGGCTTCTGCTGAAACCTGGATTGACATGGTGAATGAATTTCAGAAGGGTGCCTTATCAACCCGGCTCGGAATTCCAATGTTTTATGGGATTGATGCCGTTCATGGCCACAACACGGTTCACAACGCAACTATTTTTCCTCACAATATTGGCCTTGGAGCTACCAGGGACCCTGAACTAGTTAAGAGAATTGGAGCTGCAACTGCCCTTGAAGTTAGAGCAACAGGAATTCAATATGTTTATTCACCTTGTATAGCAGTCTGTAGAGATCCAAGATGGGGTCGGTGTTATGAAAGCTTCAGTGAAGATCCTGAACTAGTTCAAGCTATGACTGAAATTATACCAGGATTGCAAGGGGACATCCCTAATGATTCACCAAAGGGTGTCCCTTTTATCACTGGAAAAGAAAAAGTTATAGGTTGTGCTAAGCACTACGTGGGTGATGGTGGAACAATCAATGGGATTGATGAGCACAACACTGTTATAGATAGAGATGGATTGATGAAAATTCACATGCCAGGCTACTTCAGCTCAATCAGCAAGGGTGTGGCAACCATTATGGCCTCTTACTCCAGTTGGAATGGAGTAAAAATGCATGCTCACCATGATCTTATTACTGGCTTCCTCAAGAATACTCTCCATTTCAAGGGCTTTGTCATTTCAGATTTTGAGGGTCTTGATAGGATCACCTCTCCACCTCGTGCAAATATCACTTATTCAATTGAAGCAGGAGTTTCTGCTGGCATTGACATGTTCATGGTTCCAAAGCATTACACAGAATTCATAGATGTTCTAACCATGTTGGTGAAAAATAAGCACATTCCCATGAGTCGAATTGATGATGCAGTGGGAAGAATTTTGTGGGTTAAGTTGATGATGGGTATTTTTGAGAACCCTTTTGCTGACTACAGTTTGGTCAAATATTTAGGAATCCAGGAACACAGAAATTTGGCTAGGGAAGCAGTAAGGAAATCAATGGTCCTTCTGAAAAATGGTGAATCTGCTGACAAGCCTTTATTGCCTCTTCCTAAAAAGTCGCCAAAAATACTTGTTGCGGGAAGCCATGCTGATAATCTAGGATATCAGTGTGGTGGCTGGACCATAGAATGGCAAGGAGTTAGTGGAAACAATCTTCTCAAAGGGACTACAATTCTCACTGCTGTGAAAAACACTGTTGATCCTGAAACCACAGTGGTCTACAAGGAGAACCCTGATGTAGAGTTTGTCAAATCCAATGGATTTTCCTATGCCATAGTTATAGTAGGGGAGCACCCTTATGCTGAAATGTATGGTGACAGCATGAACTTGACAATCCCAGAACCTGGTCCTAAGATCATAACAAATGTCTGTGGAGCAATAAAATGCGTGGTTATCATTATTTCTGGTCGTCCTGTAGTTATTGAACCATATGTTGGTTTAATAGATGCACTTGTTGCTGCATGGCTCCCAGGTAGCGAAGGCCAAGGTGTGGCTGATGTTTTATATGGCGGCTATGGTTTCACTGGAAAGCTTCCAAGGACATGGTTCAAAACTGTTGATCAACTGCCAATGAATGTTGGAGATCCTCACTATGATCCCCTCTTCCCATTTGGGTTTGGCCTTTCTACCAAACCTTCTAAGGCCCTTTATTCCTCTTGATGTATATTTTTTTATGTAAAACTATAAACAATAAAAGAGGGTAGGATTTATTTACTAACATGTGATAAAATATTACAAATTTACCTTAATTATATTATCTTTGCAACATTTCAACGATA
Coding sequences of Glyma.19g113500
>Glyma.19g113500.1 sequence-type=CDS polypeptide=Glyma.19g113500.1.p locus=Glyma.19g113500 ID=Glyma.19g113500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCTGGAGGGAATGGCTAAAATCTCCATCTTGTTGGTGGGGCTTTGGCTACTAGTTAACTGGTCAGGGTTGTTGGATGCAAAAAACATGAAGTACAAGAACCCTAAACACTCAACTGATACTCGGGTTGAGGATCTTGTTAGCAGGATGACTCTTGAGGAGAAAATTGGCCAAATGTTGCAGGTTGAGCGCAAGTATGTATCTGCTGATTTACTTAAGAAGTATTTTATTGGGGCTGTATTGAGTGAGGGAGGGAGTATTCCAGCTCCACAGGCTTCTGCTGAAACCTGGATTGACATGGTGAATGAATTTCAGAAGGGTGCCTTATCAACCCGGCTCGGAATTCCAATGTTTTATGGGATTGATGCCGTTCATGGCCACAACACGGTTCACAACGCAACTATTTTTCCTCACAATATTGGCCTTGGAGCTACCAGGGACCCTGAACTAGTTAAGAGAATTGGAGCTGCAACTGCCCTTGAAGTTAGAGCAACAGGAATTCAATATGTTTATTCACCTTGTATAGCAGTCTGTAGAGATCCAAGATGGGGTCGGTGTTATGAAAGCTTCAGTGAAGATCCTGAACTAGTTCAAGCTATGACTGAAATTATACCAGGATTGCAAGGGGACATCCCTAATGATTCACCAAAGGGTGTCCCTTTTATCACTGGAAAAGAAAAAGTTATAGGTTGTGCTAAGCACTACGTGGGTGATGGTGGAACAATCAATGGGATTGATGAGCACAACACTGTTATAGATAGAGATGGATTGATGAAAATTCACATGCCAGGCTACTTCAGCTCAATCAGCAAGGGTGTGGCAACCATTATGGCCTCTTACTCCAGTTGGAATGGAGTAAAAATGCATGCTCACCATGATCTTATTACTGGCTTCCTCAAGAATACTCTCCATTTCAAGGGCTTTGTCATTTCAGATTTTGAGGGTCTTGATAGGATCACCTCTCCACCTCGTGCAAATATCACTTATTCAATTGAAGCAGGAGTTTCTGCTGGCATTGACATGTTCATGGTTCCAAAGCATTACACAGAATTCATAGATGTTCTAACCATGTTGGTGAAAAATAAGCACATTCCCATGAGTCGAATTGATGATGCAGTGGGAAGAATTTTGTGGGTTAAGTTGATGATGGGTATTTTTGAGAACCCTTTTGCTGACTACAGTTTGGTCAAATATTTAGGAATCCAGGAACACAGAAATTTGGCTAGGGAAGCAGTAAGGAAATCAATGGTCCTTCTGAAAAATGGTGAATCTGCTGACAAGCCTTTATTGCCTCTTCCTAAAAAGTCGCCAAAAATACTTGTTGCGGGAAGCCATGCTGATAATCTAGGATATCAGTGTGGTGGCTGGACCATAGAATGGCAAGGAGTTAGTGGAAACAATCTTCTCAAAGGGACTACAATTCTCACTGCTGTGAAAAACACTGTTGATCCTGAAACCACAGTGGTCTACAAGGAGAACCCTGATGTAGAGTTTGTCAAATCCAATGGATTTTCCTATGCCATAGTTATAGTAGGGGAGCACCCTTATGCTGAAATGTATGGTGACAGCATGAACTTGACAATCCCAGAACCTGGTCCTAAGATCATAACAAATGTCTGTGGAGCAATAAAATGCGTGGTTATCATTATTTCTGGTCGTCCTGTAGTTATTGAACCATATGTTGGTTTAATAGATGCACTTGTTGCTGCATGGCTCCCAGGTAGCGAAGGCCAAGGTGTGGCTGATGTTTTATATGGCGGCTATGGTTTCACTGGAAAGCTTCCAAGGACATGGTTCAAAACTGTTGATCAACTGCCAATGAATGTTGGAGATCCTCACTATGATCCCCTCTTCCCATTTGGGTTTGGCCTTTCTACCAAACCTTCTAAGGCCCTTTATTCCTCTTGA

>Glyma.19g113500.2 sequence-type=CDS polypeptide=Glyma.19g113500.2.p locus=Glyma.19g113500 ID=Glyma.19g113500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCTGGAGGGAATGGCTAAAATCTCCATCTTGTTGGTGGGGCTTTGGCTACTAGTTAACTGGTCAGGGTTGTTGGATGCAAAAAACATGAAGTACAAGAACCCTAAACACTCAACTGATACTCGGGTTGAGGATCTTGTTAGCAGGATGACTCTTGAGGAGAAAATTGGCCAAATGTTGCAGGTTGAGCGCAAGTATGTATCTGCTGATTTACTTAAGAAGTATTTTATTGGGGCTGTATTGAGTGAGGGAGGGAGTATTCCAGCTCCACAGGCTTCTGCTGAAACCTGGATTGACATGGTGAATGAATTTCAGAAGGGTGCCTTATCAACCCGGCTCGGAATTCCAATGTTTTATGGGATTGATGCCGTTCATGGCCACAACACGGTTCACAACGCAACTATTTTTCCTCACAATATTGGCCTTGGAGCTACCAGGGACCCTGAACTAGTTAAGAGAATTGGAGCTGCAACTGCCCTTGAAGTTAGAGCAACAGGAATTCAATATGTTTATTCACCTTGTATAGCAGTCTGTAGAGATCCAAGATGGGGTCGGTGTTATGAAAGCTTCAGTGAAGATCCTGAACTAGTTCAAGCTATGACTGAAATTATACCAGGATTGCAAGGGGACATCCCTAATGATTCACCAAAGGGTGTCCCTTTTATCACTGGAAAAGAAAAAGTTATAGGTTGTGCTAAGCACTACGTGGGTGATGGTGGAACAATCAATGGGATTGATGAGCACAACACTGTTATAGATAGAGATGGATTGATGAAAATTCACATGCCAGGCTACTTCAGCTCAATCAGCAAGGGTGTGGCAACCATTATGGCCTCTTACTCCAGTTGGAATGGAGTAAAAATGCATGCTCACCATGATCTTATTACTGGCTTCCTCAAGAATACTCTCCATTTCAAGGGCTTTGTCATTTCAGATTTTGAGGGTCTTGATAGGATCACCTCTCCACCTCGTGCAAATATCACTTATTCAATTGAAGCAGGAGTTTCTGCTGGCATTGACATGTTCATGGTTCCAAAGCATTACACAGAATTCATAGATGTTCTAACCATGTTGGTGAAAAATAAGCACATTCCCATGAGTCGAATTGATGATGCAGTGGGAAGAATTTTGTGGGTTAAGTTGATGATGGGTATTTTTGAGAACCCTTTTGCTGACTACAGTTTGGTCAAATATTTAGGAATCCAGGAACACAGAAATTTGGCTAGGGAAGCAGTAAGGAAATCAATGGTCCTTCTGAAAAATGGTGAATCTGCTGACAAGCCTTTATTGCCTCTTCCTAAAAAGTCGCCAAAAATACTTGTTGCGGGAAGCCATGCTGATAATCTAGGATATCAGTGTGGTGGCTGGACCATAGAATGGCAAGGAGTTAGTGGAAACAATCTTCTCAAAGGGACTACAATTCTCACTGCTGTGAAAAACACTGTTGATCCTGAAACCACAGTGGTCTACAAGGAGAACCCTGATGTAGAGTTTGTCAAATCCAATGGATTTTCCTATGCCATAGTTATAGTAGGGGAGCACCCTTATGCTGAAATGTATGGTGACAGCATGAACTTGACAATCCCAGAACCTGGTCCTAAGATCATAACAAATGTCTGTGGAGCAATAAAATGCGTGGTTATCATTATTTCTGGTCGTCCTGTAGTTATTGAACCATATGTTGGTTTAATAGATGCACTTGTTGCTGCATGGCTCCCAGGTAGCGAAGGCCAAGGTGTGGCTGATGTTTTATATGGCGGCTATGGTTTCACTGGAAAGCTTCCAAGGACATGGTTCAAAACTGTTGATCAACTGCCAATGAATGTTGGAGATCCTCACTATGATCCCCTCTTCCCATTTGGGTTTGGCCTTTCTACCAAACCTTCTAAGGCCCTTTATTCCTCTTGA
Predicted protein sequences of Glyma.19g113500
>Glyma.19g113500.1.p sequence-type=predicted peptide transcript=Glyma.19g113500.1 locus=Glyma.19g113500 ID=Glyma.19g113500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDLEGMAKISILLVGLWLLVNWSGLLDAKNMKYKNPKHSTDTRVEDLVSRMTLEEKIGQMLQVERKYVSADLLKKYFIGAVLSEGGSIPAPQASAETWIDMVNEFQKGALSTRLGIPMFYGIDAVHGHNTVHNATIFPHNIGLGATRDPELVKRIGAATALEVRATGIQYVYSPCIAVCRDPRWGRCYESFSEDPELVQAMTEIIPGLQGDIPNDSPKGVPFITGKEKVIGCAKHYVGDGGTINGIDEHNTVIDRDGLMKIHMPGYFSSISKGVATIMASYSSWNGVKMHAHHDLITGFLKNTLHFKGFVISDFEGLDRITSPPRANITYSIEAGVSAGIDMFMVPKHYTEFIDVLTMLVKNKHIPMSRIDDAVGRILWVKLMMGIFENPFADYSLVKYLGIQEHRNLAREAVRKSMVLLKNGESADKPLLPLPKKSPKILVAGSHADNLGYQCGGWTIEWQGVSGNNLLKGTTILTAVKNTVDPETTVVYKENPDVEFVKSNGFSYAIVIVGEHPYAEMYGDSMNLTIPEPGPKIITNVCGAIKCVVIIISGRPVVIEPYVGLIDALVAAWLPGSEGQGVADVLYGGYGFTGKLPRTWFKTVDQLPMNVGDPHYDPLFPFGFGLSTKPSKALYSS*

>Glyma.19g113500.2.p sequence-type=predicted peptide transcript=Glyma.19g113500.2 locus=Glyma.19g113500 ID=Glyma.19g113500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDLEGMAKISILLVGLWLLVNWSGLLDAKNMKYKNPKHSTDTRVEDLVSRMTLEEKIGQMLQVERKYVSADLLKKYFIGAVLSEGGSIPAPQASAETWIDMVNEFQKGALSTRLGIPMFYGIDAVHGHNTVHNATIFPHNIGLGATRDPELVKRIGAATALEVRATGIQYVYSPCIAVCRDPRWGRCYESFSEDPELVQAMTEIIPGLQGDIPNDSPKGVPFITGKEKVIGCAKHYVGDGGTINGIDEHNTVIDRDGLMKIHMPGYFSSISKGVATIMASYSSWNGVKMHAHHDLITGFLKNTLHFKGFVISDFEGLDRITSPPRANITYSIEAGVSAGIDMFMVPKHYTEFIDVLTMLVKNKHIPMSRIDDAVGRILWVKLMMGIFENPFADYSLVKYLGIQEHRNLAREAVRKSMVLLKNGESADKPLLPLPKKSPKILVAGSHADNLGYQCGGWTIEWQGVSGNNLLKGTTILTAVKNTVDPETTVVYKENPDVEFVKSNGFSYAIVIVGEHPYAEMYGDSMNLTIPEPGPKIITNVCGAIKCVVIIISGRPVVIEPYVGLIDALVAAWLPGSEGQGVADVLYGGYGFTGKLPRTWFKTVDQLPMNVGDPHYDPLFPFGFGLSTKPSKALYSS*






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