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Report for Sequence Feature Glyma.19g111800

Feature Type:gene_model
Chromosome:Gm19
Start:36595401
stop:36597486
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g111800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G08290.1AT mRNA splicing factor, thioredoxin-like U5 snRNP JGI N/AIEA
GO:0000245GO-bp spliceosomal complex assembly EnsemblGenomesN/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0045454GO-bp cell redox homeostasis JGI N/AIEA
GO:0005681GO-cc spliceosomal complex EnsemblGenomesN/AIEA
GO:0005681GO-cc spliceosomal complex JGI N/AIEA
GO:0005682GO-cc U5 snRNP EnsemblGenomesN/AIEA
GO:0046540GO-cc U4/U6 x U5 tri-snRNP complex EnsemblGenomesN/AIEA
KOG3414 KOG Component of the U4/U6.U5 snRNP/mitosis protein DIM1 JGI N/AIEA
PTHR12052Panther THIOREDOXIN-LIKE PROTEN 4A, 4B JGI N/AIEA
PF02966PFAM Mitosis protein DIM1 JGI N/AIEA

Expression Patterns of Glyma.19g111800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g111800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g28850 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g111800
>Glyma.19g111800.1 sequence-type=CDS polypeptide=Glyma.19g111800.1.p locus=Glyma.19g111800 ID=Glyma.19g111800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGTACCTGTTGCCTCACTTGCACTCTGGGTGGGCGGTTGATCAAGCAATCCTGGCAGAAGAGGAGCGTCTGGTCGTGATCCGTTTCGGGCACGACTGGGACGAAACCTGCATGCAGATGGACGAGGTGTTGGCGTCGGTGGCGGAGACGATAAAGAACTTTGCGGTGATATACCTGGTTGACATAACGGAGGTGCCGGATTTCAACACCATGTACGAGCTCTACGACCCTTCCACGGTGATGTTCTTCTTCAGGAACAAGCACATCATGATTGATCTGGGAACCGGTAACAACAACAAGATCAACTGGGCTCTCAAGGACAAGCAGGAGTTCATCGACATTGTTGAGACCGTCTACCGTGGAGCCAGGAAGGGACGTGGTCTCGTCATCGCTCCCAAAGATTACTCCACCAAGTACCGTTACTAG
Predicted protein sequences of Glyma.19g111800
>Glyma.19g111800.1.p sequence-type=predicted peptide transcript=Glyma.19g111800.1 locus=Glyma.19g111800 ID=Glyma.19g111800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSYLLPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY*






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