SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.19g111600

Feature Type:gene_model
Chromosome:Gm19
Start:36584286
stop:36587354
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g111600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G22980.1AT Ribosomal protein S5/Elongation factor G/III/V family protein JGI N/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity JGI N/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
KOG0467 KOG Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins JGI N/AIEA
PTHR23115Panther TRANSLATION FACTOR JGI N/AIEA
PTHR23115:SF3Panther ELONGATION FACTOR TU GTP-BINDING DOMAIN-CONTAINING PROTEIN 1 JGI N/AIEA
PF00009PFAM Elongation factor Tu GTP binding domain JGI N/AIEA
PF00679PFAM Elongation factor G C-terminus JGI N/AIEA
PF03144PFAM Elongation factor Tu domain 2 JGI N/AIEA

Expression Patterns of Glyma.19g111600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g111600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g28830 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g111600
>Glyma.19g111600.1 sequence-type=CDS polypeptide=Glyma.19g111600.1.p locus=Glyma.19g111600 ID=Glyma.19g111600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGAGGAAAGTTCCAATTGCATCGACAACGAGAGGGATCTCATCCGCAACATCTGCATCCTAGCGCACGTCGACCACGGCAAGACCACCCTCGCCGACCACCTCATCGCCGCCGCGGGCGGCGGCGTCGTCCACCCAAAGCTCGCCGGCCGCGTCCGCTTCATGGACTACCTGGACGAGGAGCAGCGCCGCGCCATCACGATGAAGAGCTCCTCCATCCTCCTCCGCTATGCCGGCCGCTACGCGGTGAACCTCATCGACTCCCCCGGCCACATCGACTTCTGCAGCGAGGTCTCCACCGCCGCCCGACTCAGCGACGGCGCCCTCCTCCTCGTCGACGCCGTCGAAGGCGTCCACATCCAGACCCACGCCGTCCTCCGCCAGTGCTGGATCGAGCGCCTCACCCCCTGCCTCGTCCTCAACAAACTCGACCGCTTAATCACCGAGCTCAAACTTACCCCCTCTGAGGCCTACACGCGCCTCTTACGAATCGTTCACGAGGTCAACGGAATAGTCAGCGCTTATAAATCCGAAAAGTATCTCACCGACGTGGATTCCCTCCTCGCCGGAACCGGCAACGGCACCACCACCGGCGAGACCCTCGAGGACTACGATGATAACGAGGATGTTTTTCAGCCGCAGAAAGGTAATGTTATATTCGCATGCGCTTTAGATGGTTGGGGATTTGGGATTCGTGAGTTTGCGGAGATTTATGCTTCTAAGCTTGGGGCGAGTGTGAATGCCTTGCTGAGGGCGTTGTGGGGACAGAGGTATTATAACCCTAAGACGAAGATGATTGTTGGGAAGAAAGGGGTTGGGGGGAATAAGAAGCCTATGTTTGTTCAGTTTGTGTTGGAGCCCTTGTGGCAGGTGTATCAGGGGGCCTTGGAAGGGGATAAGGGGCTGGTGGAGAAGGTTATTAGGACCTTTAGTTTGTCGGTGCCGCAGCGGGAGCTGCAGAACAAGGATGTCAAGGTTGTGCTGCAGGCGGTTATGAGCCGCTGGCTTCCGCTTTCGGAGGCGGTTTTGTCCATGGTGGTTAGGTGTTTGCCGGACCCGGTGACGGCGCAGGCATTTAGGATATCCAGGTTGATTCCCAAGAAGGAGGTTATTGGGGATGTGGAGGGGGTTGAGGGTTTGGTGGAGGAGGCGGAGTTGGCGAGGAATTCGGTGGAGGAGTGTGATTGTCGGGACGAGGCTCCTTGTGTGGCTTTTGTGTCCAAGATGTTTGCTGTTCCGGTTAAGATGCTGCCTGGACACAGGGTGGAGGTTGGCAATGGTTATGGTGATGAAGGAGAGAGTGAGTCGGATGAGTGTTTTTTGGCGTTTGCTAGGATTTTTAGTGGGGTTTTGCATGCTGGGCAGAGAATTTTTGTGCTTTCTGCATTGTATGATCCGGTGAAAGGGGAGTCGATGCAGAAGCATATTCAGGAGGCTGAGTTGAAATCCCTGTATTTGATGATGGGGCAAGGGTTGAAAGTAGTGACATCTGCCAGGGCTGGGAATATTGTTGCCATTGCAGGCCTTGGGCAGCATATATTGAAGAGTGCTACTCTTTCTTCTACTAAGAACTGTTGGCCTTTTTCGAGTATGGCATTCCAAGTTGCTCCAACTTTGAGAGTTGCAATTGAGCCGTCTGATCCTGCTGATGTGGGTGCATTGCTCAAAGGCTTGAGGCTTTTGAATCGAGCAGATCCGTTTGTTGAGGTCACCGTGTCTGGAAGGGGAGAGCATGTTCTTGCTGCTGCTGGGGAAGTTCATCTTGAGAGATGCATAAAGGATTTAAAGGAGAGGTTTGCCAAGGTAAGCTTGGAGGTCTCTCCGCCTCTCGTGTCCTACAAAGAAACCATTGAGGGAGACGTATTGAACGTGATGGAAAATTTGAAAGTTCTTAGCAGGAGATCATCAGATTATGTTGAAAAAACAACACCCAATGGAAGATGTGTTGTTCGGGTGCAGGTGATGAAACTTCTACCTTCTTTGACGAAGGTGCTCGATGAAAGCTCTGATTTACTTGGAGATATTATTGGAGTAAAGTCGGGGCAAAGACCGAGTATTCTTGAAAACGATAACCCAGTTGAAGTGCTAAAAAAACGCATATTGGATGCAGTGGAGGGTGATATTTTGAGCAGGAATGAAAATGACAAGGACCATGCTGAGAAATGTAAATTGAAGTGGCTAAAGATTTTGAGGAGGATATGGGCACTTGGACCAAGGCAAATTGGTCCGAACCTTCTCTTTACTCCTGATATTAAAGCACAAAGCACCAATAGCTCTGTCTTAATACGTGGTTCTCCTCGCATATCAGAAAGGCTGGGCTTTGTGGCCGATTCTAGTATCAATGACTCAGTTGATGAGACGTCTTCAAATGCAAACTCAGCTTTATACATGGATGCTGAGCACCTTGAGAGTAGTGTTATATCTGGTTTCCAATTGGCCACTTCAGCTGGACCCTTGTGTGATGAACCTATGTGGGGTTTGGCATTTGTCGTTGAGGCACGGTTATCTCCATTTCCAGGACAGCATGATGAATCTGAAACGCACCAACAATCGGAGCAGTACGGCATATTTGCAGGGCAGGTAATTGCAACTGTCAAAGATGCTTGTAGAGCAGCTGTGGTTCAGAATAAACCACGGCTGGTGGAAGCAATGTATTTTTGTGAATTGAATACACCTACTGAATATTTGGGTCCCATGTATGCTGTACTTTCCCGAAGACGGGCCCGAGTATTGAAGGAAGAGATGCAAGAAGGTTCCCCTTTCTTCACTGTGCATGCGTATCTTCCTGTTTCTGAGAGCTTTGGTTTTGCGGATGAGCTTAGAAGGTGGACTTCTGGTGCCGCAAGTGCACTTCTTGTCCTTAGCCACTGGGAAGCACTTCCTGAGGATCCTTTCTTTGTACCTAAAACGGAAGAGGAAATTGAAGAGTTTGGAGATGGTTCTAGTGTTCTTCCAAATACGGCAAGAAAATTGATTAATGCAGTCAGACGGCGTAAGGGCCTTCCTGTGGAGGAAAAGGTAGTGCAGCATGGAACAAAGCAGAGGACACTGGCTCGTAAAGTCTGA
Predicted protein sequences of Glyma.19g111600
>Glyma.19g111600.1.p sequence-type=predicted peptide transcript=Glyma.19g111600.1 locus=Glyma.19g111600 ID=Glyma.19g111600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEESSNCIDNERDLIRNICILAHVDHGKTTLADHLIAAAGGGVVHPKLAGRVRFMDYLDEEQRRAITMKSSSILLRYAGRYAVNLIDSPGHIDFCSEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLTPCLVLNKLDRLITELKLTPSEAYTRLLRIVHEVNGIVSAYKSEKYLTDVDSLLAGTGNGTTTGETLEDYDDNEDVFQPQKGNVIFACALDGWGFGIREFAEIYASKLGASVNALLRALWGQRYYNPKTKMIVGKKGVGGNKKPMFVQFVLEPLWQVYQGALEGDKGLVEKVIRTFSLSVPQRELQNKDVKVVLQAVMSRWLPLSEAVLSMVVRCLPDPVTAQAFRISRLIPKKEVIGDVEGVEGLVEEAELARNSVEECDCRDEAPCVAFVSKMFAVPVKMLPGHRVEVGNGYGDEGESESDECFLAFARIFSGVLHAGQRIFVLSALYDPVKGESMQKHIQEAELKSLYLMMGQGLKVVTSARAGNIVAIAGLGQHILKSATLSSTKNCWPFSSMAFQVAPTLRVAIEPSDPADVGALLKGLRLLNRADPFVEVTVSGRGEHVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGDVLNVMENLKVLSRRSSDYVEKTTPNGRCVVRVQVMKLLPSLTKVLDESSDLLGDIIGVKSGQRPSILENDNPVEVLKKRILDAVEGDILSRNENDKDHAEKCKLKWLKILRRIWALGPRQIGPNLLFTPDIKAQSTNSSVLIRGSPRISERLGFVADSSINDSVDETSSNANSALYMDAEHLESSVISGFQLATSAGPLCDEPMWGLAFVVEARLSPFPGQHDESETHQQSEQYGIFAGQVIATVKDACRAAVVQNKPRLVEAMYFCELNTPTEYLGPMYAVLSRRRARVLKEEMQEGSPFFTVHAYLPVSESFGFADELRRWTSGAASALLVLSHWEALPEDPFFVPKTEEEIEEFGDGSSVLPNTARKLINAVRRRKGLPVEEKVVQHGTKQRTLARKV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo