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Report for Sequence Feature Glyma.19g111000

Feature Type:gene_model
Chromosome:Gm19
Start:36534479
stop:36539096
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g111000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G18170.1AT glutamate dehydrogenase 1 JGI N/AIEA
GO:0006520GO-bp cellular amino acid metabolic process EnsemblGenomesN/AIEA
GO:0006520GO-bp cellular amino acid metabolic process JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016639GO-mf oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor EnsemblGenomesN/AIEA
KOG2250 KOG Glutamate/leucine/phenylalanine/valine dehydrogenases JGI N/AIEA
PTHR11606Panther GLUTAMATE DEHYDROGENASE JGI N/AIEA
PF00208PFAM Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JGI N/AIEA
PF02812PFAM Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JGI N/AIEA
ALACAT2-PWYSoyCyc9 L-alanine degradation II (to D-lactate) Plant Metabolic Network ISS
GLUTAMATE-DEG1-PWYSoyCyc9 L-glutamate degradation I Plant Metabolic Network ISS
GN7V-67730SoyCyc9-rxn NAD-dependent glutamate dehydrogenase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g111000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g111000
ParalogEvidenceComments
Glyma.16g041200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g111000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g28770 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g111000
>Glyma.19g111000.2 sequence-type=transcript locus=Glyma.19g111000 ID=Glyma.19g111000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAGGGGCACTGGCTAAACAGTTCATTCATAAGCTATTTCAGGAAAGTATAATAAAGGTTTCCTGAACACATTAACTTTGAATTGACAGAACATGAGAATAATAAAACTGTATTCTCATTCCAAGGAGCATGGCAGATTTCTGTAATTATTTTTCTTCTAGGAGATGTGAAAGAAGCTAGAACACAAGACAGTCAAGGGGAACAATGAATGCACTAGCAGCCACCAACAGGAACTTTAAGTTGGCCTCTAGGCTTCTGGGATTGGATTCAAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAGGTTGAATGTACCATACCTAAAGATGATGGCACGTTGCAATCTTATGTTGGGTTCAGGGTTCAACATGATAATGCCAGAGGCCCCATGAAAGGAGGAATCAGATACCATCCTGAGGTTGACCCTGATGAAGTGAATGCTTTAGCACAACTAATGACATGGAAAACAGCTGTAGCAAATATACCATATGGTGGTGCCAAAGGAGGGATAGGGTGTGACCCAGCAGAATTAAGTATATCTGAGTTAGAAAGACTTACTAGAGTTTTTACACAAAAAATTCATGATTTGATTGGAACTCACACAGATGTGCCAGCACCTGATATGGGAACAGGGCCACAGACCATGGCATGGATACTAGATGAGTATTCCAAATTCCACGGTTACTCTCCTGCAGTAGTGACTGGAAAACCTATAGATCTTGGTGGATCTCTAGGTAGAGACGCGGCTACAGGACGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGTGGAAAAGTTGTAGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCAATGGTCTTGACATCCCAAACCTTCTTGAGCATTCCAAAGGGCACAGGGGAGTAAAAGGATTCCATGGTGGTGATCCAATTGACCCTAACTCAATATTGGTTGAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAGGCTGATGAGATTCTGAAGAAGAAAGGGGTTGTTATCCTCCCAGACATATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTCCAGAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAGACCTACATGACCAAAGGTTTCAAAGATGTGAAGGAAATGTGCAAAACCCATGAATGTGATCCTCGTATGGGAGCCTTCACCCTGGCAGTCAACCGTGTCGCACGTGCCACTGTCCTTAGGGGTTGGGAAGCTTGACATCTATTGCTTCTGCTTTCAATAAATTAAAGTGCTCCACTCTCAGCAACACTTCACAAAGATTTTGTTGCATTCATCTCATGTGTTGGGTGAATTGTATTTTCACCCCAAATTTTCTTTGATTTAATATCTGATTTATCAAAGGGGAAGAATCCATTTACCATTCTTATTTCTTGGATTAATATTCCAATTGCTGTTTTTGCACTAAGTACTAAAAAAAAGTGAGTAGATCTTCGAAATGTC

>Glyma.19g111000.3 sequence-type=transcript locus=Glyma.19g111000 ID=Glyma.19g111000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTGACATAGACTCTAGCTGGCTGTGTGTATATCTTAATATAAATATTAGCTCTAATGGAGAATCTCTTTTCATCTTCCATACAATTTCTATAGTCCCAATTATAGTAACAGTGCAAGATCTATTTTCCGCATCTTGGATATCTGGCTAAAAGATTGAATATTGTGTTAATCTTTCTAGTAGTCAAGGGGAACAATGAATGCACTAGCAGCCACCAACAGGAACTTTAAGTTGGCCTCTAGGCTTCTGGGATTGGATTCAAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAGGTTGAATGTACCATACCTAAAGATGATGGCACGTTGCAATCTTATGTTGGGTTCAGGGTTCAACATGATAATGCCAGAGGCCCCATGAAAGGAGGAATCAGATACCATCCTGAGGTTGACCCTGATGAAGTGAATGCTTTAGCACAACTAATGACATGGAAAACAGCTGTAGCAAATATACCATATGGTGGTGCCAAAGGAGGGATAGGGTGTGACCCAGCAGAATTAAGTATATCTGAGTTAGAAAGACTTACTAGAGTTTTTACACAAAAAATTCATGATTTGATTGGAACTCACACAGATGTGCCAGCACCTGATATGGGAACAGGGCCACAGACCATGGCATGGATACTAGATGAGTATTCCAAATTCCACGGTTACTCTCCTGCAGTAGTGACTGGAAAACCTATAGATCTTGGTGGATCTCTAGGTAGAGACGCGGCTACAGGACGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGTGGAAAAGTTGTAGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCAATGGTCTTGACATCCCAAACCTTCTTGAGCATTCCAAAGGGCACAGGGGAGTAAAAGGATTCCATGGTGGTGATCCAATTGACCCTAACTCAATATTGGTTGAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAGGCTGATGAGATTCTGAAGAAGAAAGGGGTTGTTATCCTCCCAGACATATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTCCAGAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAGACCTACATGACCAAAGGTTTCAAAGATGTGAAGGAAATGTGCAAAACCCATGAATGTGATCCTCGTATGGGAGCCTTCACCCTGGCAGTCAACCGTGTCGCACGTGCCACTGTCCTTAGGGGTTGGGAAGCTTGACATCTATTGCTTCTGCTTTCAATAAATTAAAGTGCTCCACTCTCAGCAACACTTCACAAAGATTTTGTTGCATTCATCTCATGTGTTGGGTGAATTGTATTTTCACCCCAAATTTTCTTTGATTTAATATCTGATTTATCAAAGGGGAAGAATCCATTTACCATTCTTATTTCTTGGATTAATATTCCAATTGCTGTTTTTGCACTAAGTACTAAAAAAAAGTGAGTAGATCTTCGAAATGTC
Coding sequences of Glyma.19g111000
>Glyma.19g111000.1 sequence-type=CDS polypeptide=Glyma.19g111000.1.p locus=Glyma.19g111000 ID=Glyma.19g111000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGCACTAGCAGCCACCAACAGGAACTTTAAGTTGGCCTCTAGGCTTCTGGGATTGGATTCAAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAGGTTGAATGTACCATACCTAAAGATGATGGCACGTTGCAATCTTATGTTGGGTTCAGGGTTCAACATGATAATGCCAGAGGCCCCATGAAAGGAGGAATCAGATACCATCCTGAGGTTGACCCTGATGAAGTGAATGCTTTAGCACAACTAATGACATGGAAAACAGCTGTAGCAAATATACCATATGGTGGTGCCAAAGGAGGGATAGGGTGTGACCCAGCAGAATTAAGTATATCTGAGTTAGAAAGACTTACTAGAGTTTTTACACAAAAAATTCATGATTTGATTGGAACTCACACAGATGTGCCAGCACCTGATATGGGAACAGGGCCACAGACCATGGCATGGATACTAGATGAGTATTCCAAATTCCACGGTTACTCTCCTGCAGTAGTGACTGGAAAACCTATAGATCTTGGTGGATCTCTAGGTAGAGACGCGGCTACAGGACGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGTGGAAAAGTTGTAGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCAATGGTCTTGACATCCCAAACCTTCTTGAGCATTCCAAAGGGCACAGGGGAGTAAAAGGATTCCATGGTGGTGATCCAATTGACCCTAACTCAATATTGGTTGAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAGGCTGATGAGATTCTGAAGAAGAAAGGGGTTGTTATCCTCCCAGACATATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTCCAGAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAGACCTACATGACCAAAGGTTTCAAAGATGTGAAGGAAATGTGCAAAACCCATGAATGTGATCCTCGTATGGGAGCCTTCACCCTGGCAGTCAACCGTGTCGCACGTGCCACTGTCCTTAGGGGTTGGGAAGCTTGA

>Glyma.19g111000.2 sequence-type=CDS polypeptide=Glyma.19g111000.2.p locus=Glyma.19g111000 ID=Glyma.19g111000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGCACTAGCAGCCACCAACAGGAACTTTAAGTTGGCCTCTAGGCTTCTGGGATTGGATTCAAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAGGTTGAATGTACCATACCTAAAGATGATGGCACGTTGCAATCTTATGTTGGGTTCAGGGTTCAACATGATAATGCCAGAGGCCCCATGAAAGGAGGAATCAGATACCATCCTGAGGTTGACCCTGATGAAGTGAATGCTTTAGCACAACTAATGACATGGAAAACAGCTGTAGCAAATATACCATATGGTGGTGCCAAAGGAGGGATAGGGTGTGACCCAGCAGAATTAAGTATATCTGAGTTAGAAAGACTTACTAGAGTTTTTACACAAAAAATTCATGATTTGATTGGAACTCACACAGATGTGCCAGCACCTGATATGGGAACAGGGCCACAGACCATGGCATGGATACTAGATGAGTATTCCAAATTCCACGGTTACTCTCCTGCAGTAGTGACTGGAAAACCTATAGATCTTGGTGGATCTCTAGGTAGAGACGCGGCTACAGGACGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGTGGAAAAGTTGTAGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCAATGGTCTTGACATCCCAAACCTTCTTGAGCATTCCAAAGGGCACAGGGGAGTAAAAGGATTCCATGGTGGTGATCCAATTGACCCTAACTCAATATTGGTTGAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAGGCTGATGAGATTCTGAAGAAGAAAGGGGTTGTTATCCTCCCAGACATATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTCCAGAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAGACCTACATGACCAAAGGTTTCAAAGATGTGAAGGAAATGTGCAAAACCCATGAATGTGATCCTCGTATGGGAGCCTTCACCCTGGCAGTCAACCGTGTCGCACGTGCCACTGTCCTTAGGGGTTGGGAAGCTTGA

>Glyma.19g111000.3 sequence-type=CDS polypeptide=Glyma.19g111000.3.p locus=Glyma.19g111000 ID=Glyma.19g111000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGCACTAGCAGCCACCAACAGGAACTTTAAGTTGGCCTCTAGGCTTCTGGGATTGGATTCAAAGCTTGAGAAAAGTTTGCTGATTCCATTCAGGGAAATCAAGGTTGAATGTACCATACCTAAAGATGATGGCACGTTGCAATCTTATGTTGGGTTCAGGGTTCAACATGATAATGCCAGAGGCCCCATGAAAGGAGGAATCAGATACCATCCTGAGGTTGACCCTGATGAAGTGAATGCTTTAGCACAACTAATGACATGGAAAACAGCTGTAGCAAATATACCATATGGTGGTGCCAAAGGAGGGATAGGGTGTGACCCAGCAGAATTAAGTATATCTGAGTTAGAAAGACTTACTAGAGTTTTTACACAAAAAATTCATGATTTGATTGGAACTCACACAGATGTGCCAGCACCTGATATGGGAACAGGGCCACAGACCATGGCATGGATACTAGATGAGTATTCCAAATTCCACGGTTACTCTCCTGCAGTAGTGACTGGAAAACCTATAGATCTTGGTGGATCTCTAGGTAGAGACGCGGCTACAGGACGGGGAGTCCTCTTTGCAACAGAGGCTTTGCTTAATGAGTATGGGAAGAGTGTATCTGGACAACGGTTTGTCATACAGGGTTTTGGAAATGTAGGGTCATGGGCTGCCCAATTAATTAGTGAGAAAGGTGGAAAAGTTGTAGCTGTGAGTGACATAACTGGAGCCATAAAGAACAGCAATGGTCTTGACATCCCAAACCTTCTTGAGCATTCCAAAGGGCACAGGGGAGTAAAAGGATTCCATGGTGGTGATCCAATTGACCCTAACTCAATATTGGTTGAAGATTGTGATGTTCTAGTCCCAGCGGCTCTTGGGGGTGTCATCAATAGGGAAAATGCAAATGAAATCAAGGCCAAATTTATTGTGGAAGCAGCTAATCACCCAACTGACCCAGAGGCTGATGAGATTCTGAAGAAGAAAGGGGTTGTTATCCTCCCAGACATATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGGGTCCAGAACATCCAAGGTTTCATGTGGGATGAGGAGAAAGTGAACAATGAGCTAAAGACCTACATGACCAAAGGTTTCAAAGATGTGAAGGAAATGTGCAAAACCCATGAATGTGATCCTCGTATGGGAGCCTTCACCCTGGCAGTCAACCGTGTCGCACGTGCCACTGTCCTTAGGGGTTGGGAAGCTTGA
Predicted protein sequences of Glyma.19g111000
>Glyma.19g111000.1.p sequence-type=predicted peptide transcript=Glyma.19g111000.1 locus=Glyma.19g111000 ID=Glyma.19g111000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNALAATNRNFKLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLQSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPAELSISELERLTRVFTQKIHDLIGTHTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEYGKSVSGQRFVIQGFGNVGSWAAQLISEKGGKVVAVSDITGAIKNSNGLDIPNLLEHSKGHRGVKGFHGGDPIDPNSILVEDCDVLVPAALGGVINRENANEIKAKFIVEAANHPTDPEADEILKKKGVVILPDIFANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTKGFKDVKEMCKTHECDPRMGAFTLAVNRVARATVLRGWEA*

>Glyma.19g111000.2.p sequence-type=predicted peptide transcript=Glyma.19g111000.2 locus=Glyma.19g111000 ID=Glyma.19g111000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNALAATNRNFKLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLQSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPAELSISELERLTRVFTQKIHDLIGTHTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEYGKSVSGQRFVIQGFGNVGSWAAQLISEKGGKVVAVSDITGAIKNSNGLDIPNLLEHSKGHRGVKGFHGGDPIDPNSILVEDCDVLVPAALGGVINRENANEIKAKFIVEAANHPTDPEADEILKKKGVVILPDIFANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTKGFKDVKEMCKTHECDPRMGAFTLAVNRVARATVLRGWEA*

>Glyma.19g111000.3.p sequence-type=predicted peptide transcript=Glyma.19g111000.3 locus=Glyma.19g111000 ID=Glyma.19g111000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNALAATNRNFKLASRLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLQSYVGFRVQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCDPAELSISELERLTRVFTQKIHDLIGTHTDVPAPDMGTGPQTMAWILDEYSKFHGYSPAVVTGKPIDLGGSLGRDAATGRGVLFATEALLNEYGKSVSGQRFVIQGFGNVGSWAAQLISEKGGKVVAVSDITGAIKNSNGLDIPNLLEHSKGHRGVKGFHGGDPIDPNSILVEDCDVLVPAALGGVINRENANEIKAKFIVEAANHPTDPEADEILKKKGVVILPDIFANSGGVTVSYFEWVQNIQGFMWDEEKVNNELKTYMTKGFKDVKEMCKTHECDPRMGAFTLAVNRVARATVLRGWEA*






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