|
A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G03920.1 | AT | H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein | JGI | N/A | IEA |
GO:0000454 | GO-bp | snoRNA guided rRNA pseudouridine synthesis | EnsemblGenomes | N/A | IEA |
GO:0001522 | GO-bp | pseudouridine synthesis | EnsemblGenomes | N/A | IEA |
GO:0001522 | GO-bp | pseudouridine synthesis | JGI | N/A | IEA |
GO:0006364 | GO-bp | rRNA processing | EnsemblGenomes | N/A | IEA |
GO:0042254 | GO-bp | ribosome biogenesis | EnsemblGenomes | N/A | IEA |
GO:0042254 | GO-bp | ribosome biogenesis | JGI | N/A | IEA |
GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
GO:0005730 | GO-cc | nucleolus | EnsemblGenomes | N/A | IEA |
GO:0031429 | GO-cc | box H/ACA snoRNP complex | EnsemblGenomes | N/A | IEA |
GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
GO:0034513 | GO-mf | box H/ACA snoRNA binding | EnsemblGenomes | N/A | IEA |
KOG3262 | KOG | H/ACA small nucleolar RNP component GAR1 | JGI | N/A | IEA |
PTHR23237 | Panther | NUCLEOLAR PROTEIN FAMILY A MEMBER 1 (SNORNP PROTEIN GAR1) | JGI | N/A | IEA |
PF04410 | PFAM | Gar1/Naf1 RNA binding region | JGI | N/A | IEA |
Glyma.19g110900 not represented in the dataset |
Glyma.19g110900 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.16g041400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma19g28740 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g110900.1 sequence-type=CDS polypeptide=Glyma.19g110900.1.p locus=Glyma.19g110900 ID=Glyma.19g110900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGACCCCCGAGAGGCGGTGGACGCGGCGGTGGATTCAGAGGTGGCCGCGACGGTGGATTCAGAGGTGGCCGCGACGGTGGCGGTCGCGGCAGAGGTGGTTTTGGTCGCGGCGGAGGTGGTTTTGGTCGCGGAGGAGGTGGTTTTGGTCGCGGCGGCGGATTTCGCGACGAAGGACCACCCTCCGAAGTCGTAGAGGTGTCATCATTTATGCATGCATGCGAGGGAGACGCAGTGACAAAGCTTACAAATGAGAAAGTTCCCTTTTTCAATGCTCCTATATATCTGAAAAACATGACTCAGATTGGAAAAGTTGATGAAATATTTGGTCCCATCAATGAAGCTTACTTCTCAATTAAGATGATGGAAGGGATTGTTGCTACTTCTTATTCATCTGGCGACAAGTTTTATATTGATCCAAGGAAACTGTTGCCTCTTGCAAGATTTCTTCCACAACCCAAGGGACAATCAGCTGGTAGAGGTGGAGGTGGAGGAGGTCGTGGTGGAGGTAGAGGTGGCCGTGGAGGCGGTGGTTTTCGTGGAAGGGGCGGTCCAAGGGGTGGGAGAGGTGGTCCTCCTAGGGGTGGTGGTTTCAGGGGAAGGGGGAGATCATAG
>Glyma.19g110900.1.p sequence-type=predicted peptide transcript=Glyma.19g110900.1 locus=Glyma.19g110900 ID=Glyma.19g110900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MRPPRGGGRGGGFRGGRDGGFRGGRDGGGRGRGGFGRGGGGFGRGGGGFGRGGGFRDEGPPSEVVEVSSFMHACEGDAVTKLTNEKVPFFNAPIYLKNMTQIGKVDEIFGPINEAYFSIKMMEGIVATSYSSGDKFYIDPRKLLPLARFLPQPKGQSAGRGGGGGGRGGGRGGRGGGGFRGRGGPRGGRGGPPRGGGFRGRGRS*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||