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Report for Sequence Feature Glyma.19g108300

Feature Type:gene_model
Chromosome:Gm19
Start:36079585
stop:36083553
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g108300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G06660.1AT Protein of unknown function DUF106, transmembrane JGI N/AIEA
GO:0006811GO-bp ion transport EnsemblGenomesN/AIEA
GO:0032469GO-bp endoplasmic reticulum calcium ion homeostasis EnsemblGenomesN/AIEA
GO:0070588GO-bp calcium ion transmembrane transport EnsemblGenomesN/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0030176GO-cc integral component of endoplasmic reticulum membrane EnsemblGenomesN/AIEA
GO:0005262GO-mf calcium channel activity EnsemblGenomesN/AIEA
KOG3312 KOG Predicted membrane protein JGI N/AIEA
PTHR20917Panther PNAS-RELATED JGI N/AIEA
PF01956PFAM Integral membrane protein DUF106 JGI N/AIEA

Expression Patterns of Glyma.19g108300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g108300
ParalogEvidenceComments
Glyma.16g043900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g108300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g28420 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g108300
>Glyma.19g108300.2 sequence-type=transcript locus=Glyma.19g108300 ID=Glyma.19g108300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAGTTGTGACAGTTTCAttattatgattttaatttaatttgattttatAGCGACGAGACCAGCGAGCACCACCACCGCGACCGGCGAGCCCAGCCACCGTGTTCGACTTCGAATTGAGTCCGAGAAGGCTGTTAGATAGGCTTTGGACGTTTAAACAATTCCGATCAAGATCCAATTTTGCCTTCCCATTTTCTCGTCGTTTTTTTGTAACGGTCTTTCCATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGATTGGGTTTTTACAATATTTAAACTTTTTATCTCAGTTGTTTCTAGGTTGAAGATGATATGGAACTGCAAAACTTCAGTCATTTATATTTTTGATTTGGTTCTCTTAGGGAGTCCAGAATGATTTTAATTGGTACAACTGATACTGAAAACAGTCAACTCCAGTTTTACGATGGTGATTTTCTTGTTAAGTTTTGATTTAAGTGCAATAAAGACTCTTCGTCTATGG

>Glyma.19g108300.3 sequence-type=transcript locus=Glyma.19g108300 ID=Glyma.19g108300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTGTGACAGTTTCAttattatgattttaatttaatttgattttatAGCGACGAGACCAGCGAGCACCACCACCGCGACCGGCGAGCCCAGCCACCGTGTTCGACTTCGAATTGAGTCCGAGAAGGCTGTTAGATAGGCTTTTATATTGAAAACTGAGACTTGAAGGGAAGCGGTTATAATTGGTCTGGCTTTGGACGTTTAAACAATTCCGATCAAGATCCAATTTTGCCTTCCCATTTTCTCGTCGTTTTTTTGTAACGGTCTTTCCATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGATTGGGTTTTTACAATATTTAAACTTTTTATCTCAGTTGTTTCTAGGTTGAAGATGATATGGAACTGCAAAACTTCAGTCATTTATATTTTTGATTTGGTTCTCTTAGGGAGTCCAGAATGATTTTAATTGGTACAACTGATACTGAAAACAGTCAACTCCAGTTTTACGATGGTGATTTTCTTGTTAAGTTTTGATTTAAGTGCAATAAAGACTCTTCGTCTATGG

>Glyma.19g108300.4 sequence-type=transcript locus=Glyma.19g108300 ID=Glyma.19g108300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGACAGTTTCAttattatgattttaatttaatttgattttatAGCGACGAGACCAGCGAGCACCACCACCGCGACCGGCGAGCCCAGCCACCGTGTTCGACTTCGAATTGAGTCCGAGAAGGCTGTTAGATAGGCTTTTATATTGAAAACTGAGACTTGAAGGGAAGCGGTTATAATTGGCTTTGGACGTTTAAACAATTCCGATCAAGATCCAATTTTGCCTTCCCATTTTCTCGTCGTTTTTTTGTAACGGTCTTTCCATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGATTGGGTTTTTACAATATTTAAACTTTTTATCTCAGTTGTTTCTAGGTTGAAGATGATATGGAACTGCAAAACTTCAGTCATTTATATTTTTGATTTGGTTCTCTTAGGGAGTCCAGAATGATTTTAATTGGTACAACTGATACTGAAAACAGTCAACTCCAGTTTTACGATGGTGATTTTCTTGTTAAGTTTTGATTTAAGTGCAATAAAGACTCTTCGTCTATGG
Coding sequences of Glyma.19g108300
>Glyma.19g108300.1 sequence-type=CDS polypeptide=Glyma.19g108300.1.p locus=Glyma.19g108300 ID=Glyma.19g108300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGA

>Glyma.19g108300.2 sequence-type=CDS polypeptide=Glyma.19g108300.2.p locus=Glyma.19g108300 ID=Glyma.19g108300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGA

>Glyma.19g108300.3 sequence-type=CDS polypeptide=Glyma.19g108300.3.p locus=Glyma.19g108300 ID=Glyma.19g108300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGA

>Glyma.19g108300.4 sequence-type=CDS polypeptide=Glyma.19g108300.4.p locus=Glyma.19g108300 ID=Glyma.19g108300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCATATCCCTTCTCTGATTTCAAGTACTCAGATGGCCTCAGTGTAGTGGGTATCTCCTTCTGCACAGCTATTGTCTGTGAGGCTATCTCATGGGTTCTTATCTATCGGACCAATTCTTACAAAAACCTTAGGTCCTCCATTGACAAAGCCTCCAAGAAACTTGAGACCATGAAGACTGACAGCAATAAAATCAACATCAAGAAGTCCAAGACCAAAAAAATTGACCGTGTTGAGACAAGCCTCAAAGAATCTAGCCGTGACCTGTCTCTCTTCAAGTTCAAGTCTGGGGGTGTGGTGGCTCTGGTTCTCTTTGTGGTCTTTGGGTTGCTGAATTCACTCTTCGAAGGCAAGGTTGTTGCCAAATTGCCCTTCAAACCTTTTGGGCTTATTATGAAGATGAGCCATCGAGGGTTGCAGGGTAATGACCCCACTGATTGTTCCATGGCATTTCTGTACTTCTTGTGTTCCATTAGCATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCACCAAGAGGTGCAAGTGCTGGCCTCTTTCCAATGCCTGATCCAAAGACCAGTTGA
Predicted protein sequences of Glyma.19g108300
>Glyma.19g108300.1.p sequence-type=predicted peptide transcript=Glyma.19g108300.1 locus=Glyma.19g108300 ID=Glyma.19g108300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAYPFSDFKYSDGLSVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGASAGLFPMPDPKTS*

>Glyma.19g108300.2.p sequence-type=predicted peptide transcript=Glyma.19g108300.2 locus=Glyma.19g108300 ID=Glyma.19g108300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAYPFSDFKYSDGLSVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGASAGLFPMPDPKTS*

>Glyma.19g108300.3.p sequence-type=predicted peptide transcript=Glyma.19g108300.3 locus=Glyma.19g108300 ID=Glyma.19g108300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAYPFSDFKYSDGLSVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGASAGLFPMPDPKTS*

>Glyma.19g108300.4.p sequence-type=predicted peptide transcript=Glyma.19g108300.4 locus=Glyma.19g108300 ID=Glyma.19g108300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAYPFSDFKYSDGLSVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDSNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLIMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGASAGLFPMPDPKTS*






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