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Report for Sequence Feature Glyma.19g102500

Feature Type:gene_model
Chromosome:Gm19
Start:35038411
stop:35056266
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g102500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G08660.1AT MALE GAMETOPHYTE DEFECTIVE 2 JGI N/AIEA
GO:0006486GO-bp protein glycosylation EnsemblGenomesN/AIEA
GO:0006486GO-bp protein glycosylation JGI N/AIEA
GO:0009311GO-bp oligosaccharide metabolic process EnsemblGenomesN/AIEA
GO:0018279GO-bp protein N-linked glycosylation via asparagine EnsemblGenomesN/AIEA
GO:0097503GO-bp sialylation EnsemblGenomesN/AIEA
GO:0000139GO-cc Golgi membrane EnsemblGenomesN/AIEA
GO:0005794GO-cc Golgi apparatus EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0008373GO-mf sialyltransferase activity EnsemblGenomesN/AIEA
GO:0008373GO-mf sialyltransferase activity JGI N/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups EnsemblGenomesN/AIEA
KOG2692 KOG Sialyltransferase JGI N/AIEA
PTHR11987Panther ALPHA-2,8-SIALYLTRANSFERASE JGI N/AIEA
PTHR11987:SF15Panther JGI N/AIEA
PF00777PFAM Glycosyltransferase family 29 (sialyltransferase) JGI N/AIEA
GN7V-67246SoyCyc9-rxn α-N-acetylneuraminate α-2,8-sialyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g102500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g102500 not represented in the dataset
Glyma.19g102500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g102500
ParalogEvidenceComments
Glyma.16g048900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g102500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g27546 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g102500
>Glyma.19g102500.1 sequence-type=CDS polypeptide=Glyma.19g102500.1.p locus=Glyma.19g102500 ID=Glyma.19g102500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGGCAGCACAAGCAGGTTTCCTCGCTTAACCGGCGACCCACCGTTCTTTATCTGCTGTGCGCCGCTGCATTCTTCTCCCTCCTCCTCTTCTACATCCAATCCTCTTTCTTCTCAGGCACCGTCTCTTCGGATTCGCCAACAAAAGATACCGTCTCTTCAGACCGCGACTCCGAGACAATCCGCGTTTTGTCTAACGTTCAGTCCAGTGTGAAGCAATGTGTGGATAACAGGGGGCTTGGACTCACTGCACATATTATTGATCATTGCAAGTTAATTCTTAAATACCCTGAAGGTACCAACAGCACTTGGTACAATGCACAGTTTAAGAAATTTGAGCCTTTGGAGTACAATTATGATTTGTGTGAGACAATCCTATTGTGGGAACAGTATCGGAACATGACTACGGTGTTGACCAGAGAGTATCTTGATGCTCGCCCTGGTGGTTGGATGGATTATGCTCCACAAAGGATAGCGCAACTGGGGGCAAAGAAGTGCACTAACAAGACTCTTTGTGAAGAGAACCTCAATGTGTTATTACCTGCAAAGCCCCCGTTTCATCCACGGCAGTTTCGAACTTGTGCTGTTGTTGGGAATTCTGGGGACCTTCTGAAGACTAGATTCGGGAAAGAAATTGATAGTCATGATGCTGTTTTTCGAGACAATGAGGCCCCTGTTAATGAGAAATATGCCAAATATGTTGGTCTTAAGAGGGATTTCCGTCTTGTTGTAAGAGGTGCTGCTCGTAACATGGTCCCTATTCTAAACGGGTCTGACAATGAGGTACTCATAATCAAAAGTGTGACTCATAGAGAGATCAATGCAGTTATAAAGACTATACCCAATCCAGTATATCTCTTCCAAGGAATTGTACTACGCCGTGGTGCCAAAGGAACAGGAATGAAATCTATTGAGTTAGCACTCTCCATGTGTGATATTATTGATATATATGGCTTCACTGTTGATCCAGGATACACTGAATGGACAAGATACTTCTCTCAGCCTAGGAAGGGACACAATCCACTTCAAGGAAGAGCATACTACCAACTCCTAGAATGCCTTGGGGTAATTAGGATTCACTCTCCCATGAGGTCTAAGAGGATGAAAGACTGGTCAGATATACCTAGTCGAGAAATGATAAGTGAAGCACATGCAGCAGCATTGCGCTTGAAAAGGAGTCAAGCTGGTCAGGGTGGTGATTTAGGTCAGTTTGGCAATTGTAAGGTGTGGGGGAATGTTGATCCTGACAAAAGTGGACCTGTCTCGGGATCACCAGACATGAGTGATGTCAGGAGATATTCAAGTTATAGTAAATGGGAAGTCATGCCTTTTGAGAGTTTGAGGAAAGAAGCACAGGATCATTATAACCAGATGCAAGGGGTCTCTGTATATAAAATGGATGGCAATAAGTTGGATGATCTAGTCTGTGTGAGACATTCCTTAAAATCCGAGGTGTAA
Predicted protein sequences of Glyma.19g102500
>Glyma.19g102500.1.p sequence-type=predicted peptide transcript=Glyma.19g102500.1 locus=Glyma.19g102500 ID=Glyma.19g102500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRQHKQVSSLNRRPTVLYLLCAAAFFSLLLFYIQSSFFSGTVSSDSPTKDTVSSDRDSETIRVLSNVQSSVKQCVDNRGLGLTAHIIDHCKLILKYPEGTNSTWYNAQFKKFEPLEYNYDLCETILLWEQYRNMTTVLTREYLDARPGGWMDYAPQRIAQLGAKKCTNKTLCEENLNVLLPAKPPFHPRQFRTCAVVGNSGDLLKTRFGKEIDSHDAVFRDNEAPVNEKYAKYVGLKRDFRLVVRGAARNMVPILNGSDNEVLIIKSVTHREINAVIKTIPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIIDIYGFTVDPGYTEWTRYFSQPRKGHNPLQGRAYYQLLECLGVIRIHSPMRSKRMKDWSDIPSREMISEAHAAALRLKRSQAGQGGDLGQFGNCKVWGNVDPDKSGPVSGSPDMSDVRRYSSYSKWEVMPFESLRKEAQDHYNQMQGVSVYKMDGNKLDDLVCVRHSLKSEV*






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