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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G13540.1 | AT | ARM repeat superfamily protein | JGI | N/A | IEA |
| GO:0000184 | GO-bp | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | EnsemblGenomes | N/A | IEA |
| GO:0000398 | GO-bp | mRNA splicing, via spliceosome | EnsemblGenomes | N/A | IEA |
| GO:0006406 | GO-bp | mRNA export from nucleus | EnsemblGenomes | N/A | IEA |
| GO:0016070 | GO-bp | RNA metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0016070 | GO-bp | RNA metabolic process | JGI | N/A | IEA |
| GO:0031053 | GO-bp | primary miRNA processing | EnsemblGenomes | N/A | IEA |
| GO:0045292 | GO-bp | mRNA cis splicing, via spliceosome | EnsemblGenomes | N/A | IEA |
| GO:0051028 | GO-bp | mRNA transport | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005845 | GO-cc | mRNA cap binding complex | EnsemblGenomes | N/A | IEA |
| GO:0005846 | GO-cc | nuclear cap binding complex | EnsemblGenomes | N/A | IEA |
| GO:0000339 | GO-mf | RNA cap binding | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | JGI | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | JGI | N/A | IEA |
| GO:0003729 | GO-mf | mRNA binding | EnsemblGenomes | N/A | IEA |
| GO:0005488 | GO-mf | binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| KOG1104 | KOG | Nuclear cap-binding complex, subunit NCBP1/CBP80 | JGI | N/A | IEA |
| PTHR12412 | Panther | CAP BINDING PROTEIN | JGI | N/A | IEA |
| PTHR12412:SF2 | Panther | NUCLEAR CAP-BINDING PROTEIN SUBUNIT 1 | JGI | N/A | IEA |
| PF02854 | PFAM | MIF4G domain | JGI | N/A | IEA |
| PF09088 | PFAM | MIF4G like | JGI | N/A | IEA |
| PF09090 | PFAM | MIF4G like | JGI | N/A | IEA |
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Glyma.19g101600 not represented in the dataset |
Glyma.19g101600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.16g049600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g27450 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g101600.1 sequence-type=CDS polypeptide=Glyma.19g101600.1.p locus=Glyma.19g101600 ID=Glyma.19g101600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGCAGTTGGAGAAGCCTTCTTCTACGAATCGGCGACAAGAGCCCTGAATATGGAGTCTCCTCCGACTACAAAGATCACATTGATACGTGCTTTGGCGCCCTTCGCCGCGAGCTCGACCTCTCTCAATCCGAGATTATGGAGTTCCTTCTCATGTGTGCTGAGCAATTGCCTCACAAGATTCCTCTGTATGGTACCCTGATTGGCTTAATTAACTTGGAAAATGAGGACTTTGTGAAACAACTAGTGGTGAAAACTCAAAGTAAATTTCAGGATGCCTTGGATTCTGGAAACTGCAACGGGGTTCGTATTCTAATGCGGCTTTTGACTGTTATGATGAGCAGTAAGGTTCTTCAACCAAGCTCTTTGGTGGCTGTGTTTGAAACATTTTTATCATCAGCTGCCACAACAGTAGATGATGAGAAAGGGAATCCCTTATGGCAGTCATGTGCTGACTTTTACATAACTTGCATTTTATCATGCCTCCCATGGGGTGGAGCAGAACTTATTGAGCAAGTTCCTGAAGATATTGAGAGAGTGATGGTTGGTGTAGAAGCTTACTTGAGCATCAGAAAGCATACATTTGACATCGGATTATCCTTTTTCGAGAATGATGATGAAAACGGGAAAGGTCTTGGTGACAAGGATTTTTTGGAAGATTTATGGGATAGAATACAGGTTTTATCAAGCCATGGATGGAAGGTTGACAGTGTTCCAAGATCTCATCTTTCATTTGAAGCTCAGCTGGTTGCTGGGAAGTCTCATGAATTTGGGCCAATATGCTGCCCCCGCTTACCAAGCCCGCCTTCAGTCCCTTCTGGCGTGTCTATTGGTAAACAGAAGCATGAAGCAGAATTAAAATACCCTCAAAGGATACACCGGCTAAACATATTTCCTCCTGGTAAAATTGAGGATCTACAGCCTATAGACAGATTTGTTATGGAAGAGTATCTCCTAGATGTGCTTCTGTTCTTAAATGGCTGTCGAAAGGAATGTGCTTCTTTCATGGTTGGTCTGCCAGTTTCCTTCAGATATGAGTACCTCATGGCTGAAACAATATTCTCTCAGCTGCTGATGCTACCACAACCACCTTTCAAACCAGTATATTACACACTGGTTATTATTGACCTTTGTAAGGCTCTTCCTGGAGCTTTTCCTGCAGTTGTAGCTGGAGCAGTTCGTACTCTCTTTGAGAGGATTGCTGATTTGGATATGGAGTGTCGGACACGTCTGATCCTTTGGTTCTCACACCATTTATCAAACTTCCAGTTCATCTGGCCTTGGGAAGAGTGGGCTTATGTCCTAGACCTCCCAAGGTGGGCCCCTCAACGCGTCTTTGTTCAGGAGGTTTTGGAGAGGGAAGTTCGCTTGTCATACTGGGACAAAGTTAAGCAGAGTATTGAAAATGCACCTGGTTTAGAAGAATTGCTTCCTCCAAAGGGTGGGCCGAACTTTAGTTTTGGTGCAGAAGATGGTAAAGAAAGCAATGAGCATGTACTGTCTGGACAGCTCAACAACATGGTTAAAGGAAAGGCACCTGTCCGTGAAATAATCTCATGGATTGATGAAAGTGTGTTTCCAAGTAATGGTCTAGAAGTTACTCTCAGAGTGGTTGTACAAACTTTTCTCAATATTGGATCCAAGAGTTTCACTCATTTGATGACTGTCTTAGAGAGATATGGGCAAGTCTTTGCAAAAGTATGTCCCGACCAGGATAAGCAAGTCATGCTGATAGCTGAAGTGAGTGCTTTCTGGAAGAGTAACACCCAAATGACAGCAATAGCTATTGACAGGATGATGGGTTATCGACTTGTTTCAAATCTGGCTATTGTGAGATGGGTCTTCTCAGCAGAAAATATTGAGCAATTTCATACGTCAGATCGTCCATGGGAGATTCTTAGAAATGCAGTAAGCAAGACACACAATCGTATTTCTGATCTAAGGAAAGAAATATTATCTCTTAAAAAGAATTTTTCATCTGCTGAAGAAACTGCAAAGGAGGCAAAAGCAGAGTTAGATGCTGCAGAGTCAAAACTTACACTAGTGGATGGCGAACCAGTTCTTGGTGACAATCCTACTAGATTGAATAGATTGAAATTACATGCTGAAAAGACAAAGAACGAGGTGGTGTCTCTTCAAAAATCTTCAGAAGCCAAGGAAGCTCTTCTTGCCCAAGCAATGGAGGAAAATGAGGCATTGTTTCTCTTGTTGTACAAAAGCTTCTCAAACGTGTTGATAGAGCGCCTTCCTGAAGGAGCTAGAACACTGCATGAGTTGAAGTCTGCACAAGTTGATGTGGTGATGGCAGTGGACCCTGAAGAGCCATCATCAATGGAATTAGACAATGAGAGTCAGAGACCTCAAAACAGTCAAACAAATGGCGAGAAGAAAGGTGGTGCTTATAATGTAGGTGAAAAGGAGCAGTGGTGTATCATCACTTTGGGTTATGTGAAGGCCTTTTCTAGGCAGTATGCCGCTGAGATATGGCCCCATGTTGAAAAGTTGGATGCAGAGGTATTGACAGAAGATGCACCTCTTCTTTTTCGGTCATCTGTTTATTCTGGTCTTCGAAGACCAATTCATGACGCTTGA
>Glyma.19g101600.1.p sequence-type=predicted peptide transcript=Glyma.19g101600.1 locus=Glyma.19g101600 ID=Glyma.19g101600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSSWRSLLLRIGDKSPEYGVSSDYKDHIDTCFGALRRELDLSQSEIMEFLLMCAEQLPHKIPLYGTLIGLINLENEDFVKQLVVKTQSKFQDALDSGNCNGVRILMRLLTVMMSSKVLQPSSLVAVFETFLSSAATTVDDEKGNPLWQSCADFYITCILSCLPWGGAELIEQVPEDIERVMVGVEAYLSIRKHTFDIGLSFFENDDENGKGLGDKDFLEDLWDRIQVLSSHGWKVDSVPRSHLSFEAQLVAGKSHEFGPICCPRLPSPPSVPSGVSIGKQKHEAELKYPQRIHRLNIFPPGKIEDLQPIDRFVMEEYLLDVLLFLNGCRKECASFMVGLPVSFRYEYLMAETIFSQLLMLPQPPFKPVYYTLVIIDLCKALPGAFPAVVAGAVRTLFERIADLDMECRTRLILWFSHHLSNFQFIWPWEEWAYVLDLPRWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPGLEELLPPKGGPNFSFGAEDGKESNEHVLSGQLNNMVKGKAPVREIISWIDESVFPSNGLEVTLRVVVQTFLNIGSKSFTHLMTVLERYGQVFAKVCPDQDKQVMLIAEVSAFWKSNTQMTAIAIDRMMGYRLVSNLAIVRWVFSAENIEQFHTSDRPWEILRNAVSKTHNRISDLRKEILSLKKNFSSAEETAKEAKAELDAAESKLTLVDGEPVLGDNPTRLNRLKLHAEKTKNEVVSLQKSSEAKEALLAQAMEENEALFLLLYKSFSNVLIERLPEGARTLHELKSAQVDVVMAVDPEEPSSMELDNESQRPQNSQTNGEKKGGAYNVGEKEQWCIITLGYVKAFSRQYAAEIWPHVEKLDAEVLTEDAPLLFRSSVYSGLRRPIHDA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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