Glyma.19g088300

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Report for Sequence Feature Glyma.19g088300

Feature Type:	gene_model
Chromosome:	Gm19
Start:	31430957
stop:	31433844
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g088300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G01840.1	AT	Protein kinase superfamily protein	JGI	N/A	IEA
GO:0006468	GO-bp	protein phosphorylation	EnsemblGenomes	N/A	IEA
GO:0006468	GO-bp	protein phosphorylation	JGI	N/A	IEA
GO:0007166	GO-bp	cell surface receptor signaling pathway	EnsemblGenomes	N/A	IEA
GO:0007178	GO-bp	transmembrane receptor protein serine/threonine kinase signaling pathway	EnsemblGenomes	N/A	IEA
GO:0016998	GO-bp	cell wall macromolecule catabolic process	JGI	N/A	IEA
GO:0005886	GO-cc	plasma membrane	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0004672	GO-mf	protein kinase activity	EnsemblGenomes	N/A	IEA
GO:0004672	GO-mf	protein kinase activity	JGI	N/A	IEA
GO:0004675	GO-mf	transmembrane receptor protein serine/threonine kinase activity	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	JGI	N/A	IEA
KOG1187	KOG	Serine/threonine protein kinase	JGI	N/A	IEA
PTHR24420	Panther	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE	JGI	N/A	IEA
PTHR24420:SF149	Panther		JGI	N/A	IEA
PF00069	PFAM	Protein kinase domain	JGI	N/A	IEA
PF01476	PFAM	LysM domain	JGI	N/A	IEA

Proteins Associated with Glyma.19g088300

Locus	Gene Symbol	Protein Name
	LYK10	protein LYK2

Expression Patterns of Glyma.19g088300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g088300

Paralog	Evidence	Comments
Glyma.16g059200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g088300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g25260	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.19g088300

Limit To All Plant Sequences

>Glyma.19g088300.1 sequence-type=CDS polypeptide=Glyma.19g088300.1.p locus=Glyma.19g088300 ID=Glyma.19g088300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCACAGTAGAAATGATCATTGCATTTCACATGAAGGCTTTGGTCTTTTTCCTTTGGCTGTTTGTCCCCTCATTGGGCAAAGACTTGCTAAGCTGTGAGACAACTTCACCTGATGCCTCTGGCTACCATTGCATTGAAAATGTGTCACAGAACCAATGTGAGACATTTGCACTCTTTTTAACAAACTCTTACTACTCCTCTCTCTCCAACCTCACCTCTTATTTGGGACTAAACAAGTTTGTCATAGCACAAGCAAATGGTTTCTCTGCAGACACTGAGTTCCTCTCCCAGGATCAGCCTCTACTGGTACCTATTCATTGTAAATGCATAGGTGGCTTCTCTCAGGCTGAGTTAACCAAAACTACCGTCAAAGGAGAGAGCTTCTATGGCATTGCTCAATCACTAGAGGGATTGACAACTTGCAAGGCTATTAGGGACAACAACCCTGGTGTGTCACCTTGGAATCTTGATGACAAAGTGAGATTGGTTGTTCCATTGAGATGTTCCTGCCCATTTTCATCTCAAGTTAGACCACAACCAAAGCTTCTGCTTTCTTATCCAGTAAGTGAAGGTGATACTATTTCCAATTTGGCCTCAAAGTTCAATATTACTAAAGAAGCTATTGTTTATGCTAATAACATATCATCACAAGGCCTTAGGACTAGAAGTAGTCTTGCACCCTTTACCTCTATTCTCATTCCACTTAATGGTAAGCCTATCATTGGTCCTTTGGTTAAGCCCAAGGAACCCGATTCTGGCAATCAAACAACCAGCATCCCAGTGACAAGTCCACACAAGAAATCACCAATGTGGAAGACTGAATTGTGCATTGGCCTAGCTGGGGTTGCACTTGGAGTCTGCATTGCTTTTGCTGCCGCCTTTTTCTTCATCAGATTGAAACACAAGAAGGAGGAAGAGAATTCATGCAAAGAAGGGGACTTGGAGCTGCAATATCTGAACCAAAGTGTGAGAACCACCTCAACTAGTGACAAGAAAGTTTCATTTGAAGGGTCTCAGGATGCTCTTGATGTGAAAATCGTGGACGCCCTGCCGCGGAAGTTGTTGCTGGATACATACACCATTGAAGATGTGAGAAAAGCAACTGAAGATTTCAGCTCAAGCAATCACATTGAAGGGTCAGTGTATCACGGTCGTCTGAACGGGAAGAACATGGCAATCAAAGGGACAAAGGCAGAAGTAGTGTCAAAGATAGATCTTGGCCTTTTCCATGATGCACTTCACCATCATCCCAACATACTCAGGCTTCTTGGAACTAGCATGTTAGAGGGGGAGCAGCAAGAAGAGTCATTTTTAGTTTTTGAGTATGCCAAAAATGGTTCATTGAAAGATTGGCTCCATGGTGGATTAGCCATCAAGAACCAATTCATTGCTTCCTGCTACTGTTTCCTGACTTGGAGCCAAAGGCTCAGGATCTGCCTTGATGTGGCCGGTGCCTTGCAGTATATGCACCATGTTATGAATCCAAGCTATGTGCATAGAAATGTAAAGAGCAGGAACATCTTTTTGGATGAAGAATTTGGTGCCAAGATAGGGAATTTTGGTATGGCAGGTTGTGTTGAGAATGACACTGAGGACCCTCAATTCTATTCCACCAACCCTGCCTCTTGGAGTCTTGGTTATTTGGCACCTGAATATGTGCACCAAGGTGTAATTTCCCCAAGTGTTGATATCTTTGCTTATGGGGTGGTTTTGTTGGAAGTTTTGTCCGGTCAAACACCTATAAGCAGGCCCAATGAGAAGGGAGAAGGAAGCATTTGGCTTACAGATAAAATCAGGTCCATTTTGGTGTCAGAAAATGTGAATGAACTAAGGGATTGGATAGACAGTGCATTGGGGGAGAACTATTCATTTGATGCAGCTGTGACACTTGCCAACATTGCAAGAGCTTGTGTGGAGGAAGATTCCTCTTTGAGACCAAGTGCAAGGGAAATTGTTGAGAAGCTATCAAGATTGGTGGAGGAATTACCACAAGGGGAAAATGACATGTTAATGTGTGAAAGCTCTAGCAAACCTCTGGTGAAGGCAGTGGAAAACAATGTTGAATAA

Predicted protein sequences of Glyma.19g088300

Limit To All Plant Sequences

>Glyma.19g088300.1.p sequence-type=predicted peptide transcript=Glyma.19g088300.1 locus=Glyma.19g088300 ID=Glyma.19g088300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGTVEMIIAFHMKALVFFLWLFVPSLGKDLLSCETTSPDASGYHCIENVSQNQCETFALFLTNSYYSSLSNLTSYLGLNKFVIAQANGFSADTEFLSQDQPLLVPIHCKCIGGFSQAELTKTTVKGESFYGIAQSLEGLTTCKAIRDNNPGVSPWNLDDKVRLVVPLRCSCPFSSQVRPQPKLLLSYPVSEGDTISNLASKFNITKEAIVYANNISSQGLRTRSSLAPFTSILIPLNGKPIIGPLVKPKEPDSGNQTTSIPVTSPHKKSPMWKTELCIGLAGVALGVCIAFAAAFFFIRLKHKKEEENSCKEGDLELQYLNQSVRTTSTSDKKVSFEGSQDALDVKIVDALPRKLLLDTYTIEDVRKATEDFSSSNHIEGSVYHGRLNGKNMAIKGTKAEVVSKIDLGLFHDALHHHPNILRLLGTSMLEGEQQEESFLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWSQRLRICLDVAGALQYMHHVMNPSYVHRNVKSRNIFLDEEFGAKIGNFGMAGCVENDTEDPQFYSTNPASWSLGYLAPEYVHQGVISPSVDIFAYGVVLLEVLSGQTPISRPNEKGEGSIWLTDKIRSILVSENVNELRDWIDSALGENYSFDAAVTLANIARACVEEDSSLRPSAREIVEKLSRLVEELPQGENDMLMCESSSKPLVKAVENNVE*

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