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Report for Sequence Feature Glyma.19g082500

Feature Type:gene_model
Chromosome:Gm19
Start:29915206
stop:29922642
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g082500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G60170.1AT pre-mRNA processing ribonucleoprotein binding region-containing protein JGI N/AIEA
GO:0000244GO-bp spliceosomal tri-snRNP complex assembly EnsemblGenomesN/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0005687GO-cc U4 snRNP EnsemblGenomesN/AIEA
GO:0005690GO-cc U4atac snRNP EnsemblGenomesN/AIEA
GO:0046540GO-cc U4/U6 x U5 tri-snRNP complex EnsemblGenomesN/AIEA
GO:0071011GO-cc precatalytic spliceosome EnsemblGenomesN/AIEA
GO:0097526GO-cc spliceosomal tri-snRNP complex EnsemblGenomesN/AIEA
KOG2574 KOG mRNA splicing factor PRP31 JGI N/AIEA
PTHR13904Panther PRE-MRNA SPLICING FACTOR PRP31 JGI N/AIEA
PF01798PFAM Putative snoRNA binding domain JGI N/AIEA
PF08060PFAM NOSIC (NUC001) domain JGI N/AIEA
PF09785PFAM Prp31 C terminal domain JGI N/AIEA

Expression Patterns of Glyma.19g082500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g082500
ParalogEvidenceComments
Glyma.16g063000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g082500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g24310 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g082500
>Glyma.19g082500.1 sequence-type=CDS polypeptide=Glyma.19g082500.1.p locus=Glyma.19g082500 ID=Glyma.19g082500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCCACGCTTGCCGATTCTTTTCTCGCCGACCTCGATGAACTCTCTGATAACGAGGCTGAAATTCCCGAGGATAACGATGTGGATGCCGCAGACATGGAAGAGGATGTCGATGGCGACCTTGCCGACCTAGAAAACCTAAACTATGATGACTTGGACAGTGTTTCCAAGTTGCAGAAAACCCAGAGGTACACTGATGTTATCCAGAAAGTGGAAGAGGCACTTAATAAAAAGGAGTCTGAGGTCTTGTTTCAGGTAGTGGATATAGAAGATGATCCTGAATACCAACTGATTGTGGATTGCAATGCACTGTCAGTTGATATTGAAAATGAAATTGTTATTATTCACAACTTTATTCGTGATAAGTATCGGTTGAAATTTCCGGAGCTTGAGTCACTGGTGCATCACCCGATTGATTATGCTCGTGTTGTTAAGAAGATAGGAAATGAAATGGATCTGACTCTTGTGGATTTAGAAGGGCTTTTACCCTCGGCTATTATTATGGTTGTCTCTGTTACAGCATCAACTACAACTGGAAAGCCTCTCCCAGAAGAAGTGCTTAGTAAGACAGTTGAGGCCTGTGATCGAGCTCTTGATCTTGACTCAGCAAAGAAGAAAGTTCTTGATTTCGTTGAGAGTAGAATGGGCTACATTGCACCTAATCTTTCTGCTATAGTTGGGAGTGCTGTTGCAGCTAAACTCATGGGGACAGCTGGTGGTCTAGCATCTCTTGCAAAGATGCCTGCTTGTAATGTTCAGCTTCTTGGTGCCAAGAAAAAGAATCTTGCTGGGTTCTCCACAGCAACATCTCAATTTCGTGTAGGTTACCTTGAGCAAACAGAAATATTTCAGACTACTCCTCCTTCTCTAAGGATGCGAGCATGCCGACTCCTGGCTGCAAAGTCTACACTTGCAGCCCGAGTAGATTCAATACGTGGGGATCCATCTGGAAAGACTGGAAGGGCTTTCAAGGATGAGATTCACAAAAAAATTGAGAAGTGGCAGGAGCCCCCTCCTGCTAAGCAACCAAAACCGCTTCCAGTTCCAGATTCTGAGCCTAAAAAGAAGAGAGGTGGTCGTCGTCTTAGGAAGATGAAGGAAAGGTATGCAATAACAGACATGAGGAAGTTAGCCAATAGGATGCAATTTGGAGTCCCAGAAGAGAGTTCATTAGGAGATGGTCTGGGTGAGGGCTATGGAATGCTTGGTCAGGCTGGCAGTGGCAAGCTTCGTGTGTCTGTTGGTCAAAGCAAACTTGCAGCAAAAGTTGCTAAAAAATTCAAGGAAAAGAATTATGGTAGCAGTGGTGCTACCTCTGGTTTGACATCAAGTCTTGCATTCACACCAGTGCAGGGGATTGAGCTGTCAAATCCACAGGCTCATGCACACCAACTTGGTAGTGGAACTCAAAGCACGTATTTCTCTGAAACTGGAACATTTTCAAAGATCAAGAGGACATGA
Predicted protein sequences of Glyma.19g082500
>Glyma.19g082500.1.p sequence-type=predicted peptide transcript=Glyma.19g082500.1 locus=Glyma.19g082500 ID=Glyma.19g082500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATLADSFLADLDELSDNEAEIPEDNDVDAADMEEDVDGDLADLENLNYDDLDSVSKLQKTQRYTDVIQKVEEALNKKESEVLFQVVDIEDDPEYQLIVDCNALSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTTGKPLPEEVLSKTVEACDRALDLDSAKKKVLDFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLASLAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYLEQTEIFQTTPPSLRMRACRLLAAKSTLAARVDSIRGDPSGKTGRAFKDEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKKFKEKNYGSSGATSGLTSSLAFTPVQGIELSNPQAHAHQLGSGTQSTYFSETGTFSKIKRT*






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