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Report for Sequence Feature Glyma.19g063400

Feature Type:gene_model
Chromosome:Gm19
Start:13707161
stop:13715829
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g063400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01570.1AT Oleosin family protein JGI N/AIEA
GO:0010344GO-bp seed oilbody biogenesis EnsemblGenomesN/AIEA
GO:0019915GO-bp lipid storage EnsemblGenomesN/AIEA
GO:0050826GO-bp response to freezing EnsemblGenomesN/AIEA
GO:0005811GO-cc lipid droplet EnsemblGenomesN/AIEA
GO:0012511GO-cc monolayer-surrounded lipid storage body EnsemblGenomesN/AIEA
GO:0012511GO-cc monolayer-surrounded lipid storage body JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
PF01277PFAM Oleosin JGI N/AIEA

Proteins Associated with Glyma.19g063400
LocusGene SymbolProtein Name
P89 P24 oleosin isoform A

Expression Patterns of Glyma.19g063400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g063400 not represented in the dataset
Glyma.19g063400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g063400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g13060 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g063400
>Glyma.19g063400.2 sequence-type=transcript locus=Glyma.19g063400 ID=Glyma.19g063400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAAAAATGTTAAAAAGTATATTATTCTCATTTGTCTGTCATAATTTATGTACCCCACTTTAATTTTTCTGATGTACTAAACCGAGGGCAAACTGAAACCTGTTCCTCATGCAAAGCCCCTACTCACCATGTATCATGTACGTGTCATCACCCAACAACTCCACTTTTGCTATATAACAACACCCCCGTCACACTCTCCCTCTCTAACACACACCCCACTAACAATTCCTTCACTTGCAGCACTGTTGCATCATCATCTTCATTGCAAAACCCTAAACTTCACCTTCAACCATGACCACACAAGTACCACCACACAGTGTCCAAGTCCACACAACAACACACCGCTACGAAGCTGGCGTCGTCCCCCCCGGAGCCCGTTTCGAACCGCCGCGTTATGAAGCCGGCGTCAAAGCGCCCTCCATTTACCATTCCGAGAGAGGTCCAACGACTTCCCAGGTCCTCGCCGTCCTCGCCGGCCTCCCGGTCGGTGGCATCCTGCTCCTCCTGGCGGGATTGACCCTGGCAGGAACCCTCACCGGACTGGCAGTTGCCACGCCGCTCTTCGTCCTCTTCAGCCCGGTGCTGGTTCCAGCCACGGTCGCCATCGGCCTGGCCGTGGCCGGGTTCCTGACGTCGGGGGCCTTCGGGCTCACGGCGCTGTCTTCCTTCTCCTGGATCCTGAACTACATCCGGGAGACCCAGCCAGCCTCGGAGAACCTCGCCGCCGCCGCGAAGCATCACCTCGCCGAGGCGGCGGAGTACGTGGGGCAGAAGACGAAGGAAGTGGGGCAGAAGACCAAGGAGGTTGGGCAGGATATTCAGAGCAAGGCACAGGATACAAGGGAGGCAGCTGCAAGGGATGCAAGGGAGGCAGCTGCAAGGGATGCAAGGGAAGCTGCTGCAAGGGATGCAAAGGTGGAGGCAAGGGATGTAAAGAGAACAACAGTGACAGCAACAACCGCAACCGCATGATGAGTAATTCTGATATTAGAGGGAGCATTAATGTGTTGTTGTGATGTGGTTTATATGGGGAAATTAAATAAATGATGTATGTACCTCTTGCCTATGTAGGTTTGTGTGTTTTGTTTTGTTGTCTAGCTTTGGTTATTAAGTAGTAGGGACGTTCGTTCGTGTCTCAAAAAAAGGGGTACTACCACTCTGTAGTGTATATGGATGCTGGAAATCAATGTGTTTTGTATTTGTTCACTTCCATTGTTGAATTCAATGTCAAATGTGTTTTGCGTTAAAAAAGAAAAGGAAAATATATCAAATGATTAGACAAATTATCGAAGGAGGTTAGAAGTAATAAATATTGTACATATTTCAACTATCCAGAACAATAATAAAAGTAAATATACATAAGTTTTCGAAAATACTAACATTAGGTGGATTTGGACTTTAGAGGATTCTTATATTTGCCTTCATTGTTCCCAAATGATTGAATAATAGCTTCACTTATATGTATGTGTGTGTGTGAGtgttacggatagcaatctgggactgcagacagcaaggcccaaaatgcaagacagcaaggtctcatgcaagcatgcaccgtaagtaaggagaagcgcaaccaatatgctagtatcgtgtcttctagaagatgcttaggaataaaggaatatttgccgttaggatattttctgatttcgtatatcttttccgttttggttgtggggtccttgtcccctctatagctgctatatatgtatgtaatttgcgcttccagaatgcaagaagaaatcccagaatttccttttctctctctcggctcttaggaggcagcttggtcctcgaattccaagctctatctcttctcttcctcttgttctggaggcactggtaacctcgaaaccagctaccatttccgctgcacgtaacaGTGAGTGTGTGTGTGTATAGGGAGGGGATCCACTTAGAGTTGCTCTTCATCCTCATCATCCATTTTTTTAAAATCTAATGGTTGAAATAAGTAACTAATCTTAACCATTAGATCTCAAGAAAATGAATGATGAGGATGAGAAGTAACTCTAAAAGAATTACTCTTGGAGTAAATGGATCCCTCCTCATATATATATATTAGCTCAGAAAAGCTGACAATAAGGCTAAGATATTTATGAAATGACAAAGATTGTAATCATTATAATGACATTAATCCTGATGATTGATGAATAGGAGGATAATTAGTTTTGGACTCAGTTATTTATATGTTATAGGTTGATAAGGTTCTTTTGCATTTATTAGCTCAGATAAGAGCTGACAATAATGCTGTTATTGACTACATGAATTATGATTTGATTTTGCCAAGGATACGGTTGTTATGAAGACAATTCCTAGTTTAAATTTAAAATCATTACATTGAGAATTTTGAGTATGGTACACA
Coding sequences of Glyma.19g063400
>Glyma.19g063400.1 sequence-type=CDS polypeptide=Glyma.19g063400.1.p locus=Glyma.19g063400 ID=Glyma.19g063400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCACACAAGTACCACCACACAGTGTCCAAGTCCACACAACAACACACCGCTACGAAGCTGGCGTCGTCCCCCCCGGAGCCCGTTTCGAACCGCCGCGTTATGAAGCCGGCGTCAAAGCGCCCTCCATTTACCATTCCGAGAGAGGTCCAACGACTTCCCAGGTCCTCGCCGTCCTCGCCGGCCTCCCGGTCGGTGGCATCCTGCTCCTCCTGGCGGGATTGACCCTGGCAGGAACCCTCACCGGACTGGCAGTTGCCACGCCGCTCTTCGTCCTCTTCAGCCCGGTGCTGGTTCCAGCCACGGTCGCCATCGGCCTGGCCGTGGCCGGGTTCCTGACGTCGGGGGCCTTCGGGCTCACGGCGCTGTCTTCCTTCTCCTGGATCCTGAACTACATCCGGGAGACCCAGCCAGCCTCGGAGAACCTCGCCGCCGCCGCGAAGCATCACCTCGCCGAGGCGGCGGAGTACGTGGGGCAGAAGACGAAGGAAGTGGGGCAGAAGACCAAGGAGGTTGGGCAGGATATTCAGAGCAAGGCACAGGATACAAGGGAGGCAGCTGCAAGGGATGCAAGGGAGGCAGCTGCAAGGGATGCAAGGGAAGCTGCTGCAAGGGATGCAAAGGTGGAGGCAAGGGATGTAAAGAGAACAACAGTGACAGCAACAACCGCAACCGCATGA

>Glyma.19g063400.2 sequence-type=CDS polypeptide=Glyma.19g063400.2.p locus=Glyma.19g063400 ID=Glyma.19g063400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCACACAAGTACCACCACACAGTGTCCAAGTCCACACAACAACACACCGCTACGAAGCTGGCGTCGTCCCCCCCGGAGCCCGTTTCGAACCGCCGCGTTATGAAGCCGGCGTCAAAGCGCCCTCCATTTACCATTCCGAGAGAGGTCCAACGACTTCCCAGGTCCTCGCCGTCCTCGCCGGCCTCCCGGTCGGTGGCATCCTGCTCCTCCTGGCGGGATTGACCCTGGCAGGAACCCTCACCGGACTGGCAGTTGCCACGCCGCTCTTCGTCCTCTTCAGCCCGGTGCTGGTTCCAGCCACGGTCGCCATCGGCCTGGCCGTGGCCGGGTTCCTGACGTCGGGGGCCTTCGGGCTCACGGCGCTGTCTTCCTTCTCCTGGATCCTGAACTACATCCGGGAGACCCAGCCAGCCTCGGAGAACCTCGCCGCCGCCGCGAAGCATCACCTCGCCGAGGCGGCGGAGTACGTGGGGCAGAAGACGAAGGAAGTGGGGCAGAAGACCAAGGAGGTTGGGCAGGATATTCAGAGCAAGGCACAGGATACAAGGGAGGCAGCTGCAAGGGATGCAAGGGAGGCAGCTGCAAGGGATGCAAGGGAAGCTGCTGCAAGGGATGCAAAGGTGGAGGCAAGGGATGTAAAGAGAACAACAGTGACAGCAACAACCGCAACCGCATGA
Predicted protein sequences of Glyma.19g063400
>Glyma.19g063400.1.p sequence-type=predicted peptide transcript=Glyma.19g063400.1 locus=Glyma.19g063400 ID=Glyma.19g063400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTQVPPHSVQVHTTTHRYEAGVVPPGARFEPPRYEAGVKAPSIYHSERGPTTSQVLAVLAGLPVGGILLLLAGLTLAGTLTGLAVATPLFVLFSPVLVPATVAIGLAVAGFLTSGAFGLTALSSFSWILNYIRETQPASENLAAAAKHHLAEAAEYVGQKTKEVGQKTKEVGQDIQSKAQDTREAAARDAREAAARDAREAAARDAKVEARDVKRTTVTATTATA*

>Glyma.19g063400.2.p sequence-type=predicted peptide transcript=Glyma.19g063400.2 locus=Glyma.19g063400 ID=Glyma.19g063400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTQVPPHSVQVHTTTHRYEAGVVPPGARFEPPRYEAGVKAPSIYHSERGPTTSQVLAVLAGLPVGGILLLLAGLTLAGTLTGLAVATPLFVLFSPVLVPATVAIGLAVAGFLTSGAFGLTALSSFSWILNYIRETQPASENLAAAAKHHLAEAAEYVGQKTKEVGQKTKEVGQDIQSKAQDTREAAARDAREAAARDAREAAARDAKVEARDVKRTTVTATTATA*






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