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Report for Sequence Feature Glyma.19g061900

Feature Type:gene_model
Chromosome:Gm19
Start:12966313
stop:12982373
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g061900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G14660.1AT peptide deformylase 1B JGI N/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0018206GO-bp peptidyl-methionine modification EnsemblGenomesN/AIEA
GO:0031365GO-bp N-terminal protein amino acid modification EnsemblGenomesN/AIEA
GO:0043686GO-bp co-translational protein modification EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0042586GO-mf peptide deformylase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG3137 KOG Peptide deformylase JGI N/AIEA
PTHR10458Panther PEPTIDE DEFORMYLASE JGI N/AIEA
PF01327PFAM Polypeptide deformylase JGI N/AIEA

Expression Patterns of Glyma.19g061900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g061900 not represented in the dataset
Glyma.19g061900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g061900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g14000 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g061900
>Glyma.19g061900.2 sequence-type=transcript locus=Glyma.19g061900 ID=Glyma.19g061900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAACTGATTTGAAAAAAAATATTTACTTTATATTTTAAATTATAAAAAATATTTTCCAACTTGAAGTTAGTATATAGAAAATCATCAAGTTCAAGTCTTGACCGGACAAACTAATCTCCATAAAATAATCTGAGTGACCCTCCTCACTTTGTGGCCATGGCTTCACTCACGTGCCTCCGCCCAACCCACCCTCATCTTCATCGCGGTTCAGTGCTTCTCGCCATTTCGAACCGCTGCTTCAACCATTCCTCCTTGCTGAACTGGATTCTCTCCGTAAACCCTCCTCGAACCGCTCCTCCACGCGCAATGGCCAAGCCCTGTTCCTCACCTGCCCAAGACCTAGTCGCTTCTCCTGGCGATTTTGAATTTGTGCTGCCTCTGAAAATTGTGGAGTATCCGGATCCGAGATTGAGGGCCAGGAATAAGCGCATAGTTGCCTTCGATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAAACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACTTATGGTGTTCAATCCAGTAGGTGAGCATGGTGAAGGAGAGGAAATTGTTCTTGTAAACCCAAGAGTTAGCCAATACTCAAAGAAACTGACACTATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTTTCAGTCAACTTGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTGACCATCTACAAGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAGGAAGCATAGCTACTCAATGCCTCAACATATTTGAAAGAGAAACTCTAAAGTTCGCGAGTTTTCACCAATCAGGAGCAAAATATGTAATCTTATGACTTATCCTAAAGATGCTGCTCATCCAAAGAAATCTCCTTAATGATGCAAGAATTATACTCCAGCCAGATGCACCAAAGTATGGCTGAATTGCACACATTGCAACAAAAAGTTGGCTTCATTCCTTCAACCAAAACCAGTAGAGCAACACAACCAAAAACTGCTCCAAATATAATACCTATGGCAAACACAACACTCTCCGAAAATGCCAAGGAAAGCATTGTTCGAATAAACAGTTACCTGAACAGACTAGGATCTGATTCTGAGCTCAATTGTTGGATCAAACAGATGATACCTGTATTTTTGGAGGACAAAAATTGGTGTTTACTCAAAACTTATATTGCTGTAAGAGTGACAAACATTAATTGAAGACAATTTATCACATTTCTAATTGTTTATTTCATCCGTTGGACAAAATGGAGATCTATCATGCCTACATTGAGTACACAGGAATTGAATTCTGGAGAAAGAATGTTAATAAACGTTCTGTTAAAATTATTACAGGCCCTAGAAACAAAGTATGAGGGAATGACTGGACTCCCAAGCCCTGAAAAGATAGAAAACCGCAGGAGGAGAAAGGTCGCTGTTGGTTTTGGGAAACGATGATCTTCAAGGTCAATATTAGGCATAATACTGAATGCACACTTACCAGACATTTCTAGTTTGAACTTCATAAAATGATGAAGCATAGATTACAGGTTCAATTGTTTATGAATGGTCATTGGAAGACATCTCTATTGTATCAATGCTATTGTCAGTTGTTCATGTTGCCCTGAAGGGAACAACTGTCTTGAAGGGCTATTTCCTACGtatttatttatttattgctttctattgtttTAATTCTAGTTCTAAACATTTAGCTCTAGTTGTAGGCATTTACTATGTATTATTTTAGGATTTATTACTTGAAAACAGCTCATAGAATGGAGGAAAACCTTTCTTTATATGGCTCTCCCAATATCCCGAAAGCAATAATTGTTTGTAATATAAGGGGAAATTACACTGTAATAACTTGACAAGTCTTGAATGATTCTCATTTGAATCTTGATCTCATAAACTTGAATGAAAGTTCACAAATGTTGCACTTGATCTCATAAA

>Glyma.19g061900.3 sequence-type=transcript locus=Glyma.19g061900 ID=Glyma.19g061900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAACTGATTTGAAAAAAAATATTTACTTTATATTTTAAATTATAAAAAATATTTTCCAACTTGAAGTTAGTATATAGAAAATCATCAAGTTCAAGTCTTGACCGGACAAACTAATCTCCATAAAATAATCTGAGTGACCCTCCTCACTTTGTGGCCATGGCTTCACTCACGTGCCTCCGCCCAACCCACCCTCATCTTCATCGCGGTTCAGTGCTTCTCGCCATTTCGAACCGCTGCTTCAACCATTCCTCCTTGCTGAACTGGATTCTCTCCGTAAACCCTCCTCGAACCGCTCCTCCACGCGCAATGGCCAAGCCCTGTTCCTCACCTGCCCAAGACCTAGTCGCTTCTCCTGGCGATTTTGAATTTGTGCTGCCTCTGAAAATTGTGGAGTATCCGGATCCGAGATTGAGGGCCAGGAATAAGCGCATAGTTGCCTTCGATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAAACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACTTATGGTGTTCAATCCAGTAGGTGAGCATGGTGAAGGAGAGGAAATTGTTCTTGTAAACCCAAGAGTTAGCCAATACTCAAAGAAACTGACACTATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTTTCAGTCAACTTGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTGACCATCTACAAGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAGGCCCTAGAAACAAAGTATGAGGGAATGACTGGACTCCCAAGCCCTGAAAAGATAGAAAACCGCAGGAGGAGAAAGGTCGCTGTTGGTTTTGGGAAACGATGATCTTCAAGGTCAATATTAGGCATAATACTGAATGCACACTTACCAGACATTTCTAGTTTGAACTTCATAAAATGATGAAGCATAGATTACAGGTTCAATTGTTTATGAATGGTCATTGGAAGACATCTCTATTGTATCAATGCTATTGTCAGTTGTTCATGTTGCCCTGAAGGGAACAACTGTCTTGAAGGGCTATTTCCTACGtatttatttatttattgctttctattgtttTAATTCTAGTTCTAAACATTTAGCTCTAGTTGTAGGCATTTACTATGTATTATTTTAGGATTTATTACTTGAAAACAGCTCATAGAATGGAGGAAAACCTTTCTTTATATGGCTCTCCCAATATCCCGAAAGCAATAATTGTTTGTAATATAAGGGGAAATTACACTGTAATAACTTGACAAGTCTTGAATGATTCTCATTTGAATCTTGATCTCATAAACTTGAATGAAAGTTCACAAATGTTGCACTTGATCTCATAAA
Coding sequences of Glyma.19g061900
>Glyma.19g061900.1 sequence-type=CDS polypeptide=Glyma.19g061900.1.p locus=Glyma.19g061900 ID=Glyma.19g061900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCACTCACGTGCCTCCGCCCAACCCACCCTCATCTTCATCGCGGTTCAGTGCTTCTCGCCATTTCGAACCGCTGCTTCAACCATTCCTCCTTGCTGAACTGGATTCTCTCCGTAAACCCTCCTCGAACCGCTCCTCCACGCGCAATGGCCAAGCCCTGTTCCTCACCTGCCCAAGACCTAGTCGCTTCTCCTGGCGATTTTGAATTTGTGCTGCCTCTGAAAATTGTGGAGTATCCGGATCCGAGATTGAGGGCCAGGAATAAGCGCATAGTTGCCTTCGATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAAACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACTTATGGTGTTCAATCCAGTAGGTGAGCATGGTGAAGGAGAGGAAATTGTTCTTGTAAACCCAAGAGTTAGCCAATACTCAAAGAAACTGACACTATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTTTCAGTCAACTTGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTGACCATCTACAAGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAGGCCCTAGAAACAAAGTATGAGGGAATGACTGGACTCCCAAGCCCTGAAAAGATAGAAAACCGCAGGAGGAGAAAGGTCGCTGTTGGTTTTGGGAAACGATGA

>Glyma.19g061900.2 sequence-type=CDS polypeptide=Glyma.19g061900.2.p locus=Glyma.19g061900 ID=Glyma.19g061900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCACTCACGTGCCTCCGCCCAACCCACCCTCATCTTCATCGCGGTTCAGTGCTTCTCGCCATTTCGAACCGCTGCTTCAACCATTCCTCCTTGCTGAACTGGATTCTCTCCGTAAACCCTCCTCGAACCGCTCCTCCACGCGCAATGGCCAAGCCCTGTTCCTCACCTGCCCAAGACCTAGTCGCTTCTCCTGGCGATTTTGAATTTGTGCTGCCTCTGAAAATTGTGGAGTATCCGGATCCGAGATTGAGGGCCAGGAATAAGCGCATAGTTGCCTTCGATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAAACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACTTATGGTGTTCAATCCAGTAGGTGAGCATGGTGAAGGAGAGGAAATTGTTCTTGTAAACCCAAGAGTTAGCCAATACTCAAAGAAACTGACACTATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTTTCAGTCAACTTGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTGACCATCTACAAGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAGGAAGCATAG

>Glyma.19g061900.3 sequence-type=CDS polypeptide=Glyma.19g061900.3.p locus=Glyma.19g061900 ID=Glyma.19g061900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCACTCACGTGCCTCCGCCCAACCCACCCTCATCTTCATCGCGGTTCAGTGCTTCTCGCCATTTCGAACCGCTGCTTCAACCATTCCTCCTTGCTGAACTGGATTCTCTCCGTAAACCCTCCTCGAACCGCTCCTCCACGCGCAATGGCCAAGCCCTGTTCCTCACCTGCCCAAGACCTAGTCGCTTCTCCTGGCGATTTTGAATTTGTGCTGCCTCTGAAAATTGTGGAGTATCCGGATCCGAGATTGAGGGCCAGGAATAAGCGCATAGTTGCCTTCGATGATAGTCTGAAGAAGCTTGTCCACGAAATGTTTGATGTAATGTACAAAACTGATGGTATTGGTCTCTCAGCACCCCAATTAGGAATTAATGTTCAACTTATGGTGTTCAATCCAGTAGGTGAGCATGGTGAAGGAGAGGAAATTGTTCTTGTAAACCCAAGAGTTAGCCAATACTCAAAGAAACTGACACTATTTAATGAAGGTTGCCTATCTTTCCCTGGAATCAATGCTGATGTAAAGCGACCAGAATCTGTGAAGATTGATGCACGTGATATCAATGGAACAAGGTTTTCAGTCAACTTGTCTGACCTTCCTGCACGAATATTCCAGCATGAATTTGACCATCTACAAGGAATTCTTTTCTTTGAGAGAATGACTGAAGAAGTTCTTGATAGTATTTGTGGACAGTTACAGGCCCTAGAAACAAAGTATGAGGGAATGACTGGACTCCCAAGCCCTGAAAAGATAGAAAACCGCAGGAGGAGAAAGGTCGCTGTTGGTTTTGGGAAACGATGA
Predicted protein sequences of Glyma.19g061900
>Glyma.19g061900.1.p sequence-type=predicted peptide transcript=Glyma.19g061900.1 locus=Glyma.19g061900 ID=Glyma.19g061900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASLTCLRPTHPHLHRGSVLLAISNRCFNHSSLLNWILSVNPPRTAPPRAMAKPCSSPAQDLVASPGDFEFVLPLKIVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKTDGIGLSAPQLGINVQLMVFNPVGEHGEGEEIVLVNPRVSQYSKKLTLFNEGCLSFPGINADVKRPESVKIDARDINGTRFSVNLSDLPARIFQHEFDHLQGILFFERMTEEVLDSICGQLQALETKYEGMTGLPSPEKIENRRRRKVAVGFGKR*

>Glyma.19g061900.2.p sequence-type=predicted peptide transcript=Glyma.19g061900.2 locus=Glyma.19g061900 ID=Glyma.19g061900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASLTCLRPTHPHLHRGSVLLAISNRCFNHSSLLNWILSVNPPRTAPPRAMAKPCSSPAQDLVASPGDFEFVLPLKIVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKTDGIGLSAPQLGINVQLMVFNPVGEHGEGEEIVLVNPRVSQYSKKLTLFNEGCLSFPGINADVKRPESVKIDARDINGTRFSVNLSDLPARIFQHEFDHLQGILFFERMTEEVLDSICGQLQEA*

>Glyma.19g061900.3.p sequence-type=predicted peptide transcript=Glyma.19g061900.3 locus=Glyma.19g061900 ID=Glyma.19g061900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASLTCLRPTHPHLHRGSVLLAISNRCFNHSSLLNWILSVNPPRTAPPRAMAKPCSSPAQDLVASPGDFEFVLPLKIVEYPDPRLRARNKRIVAFDDSLKKLVHEMFDVMYKTDGIGLSAPQLGINVQLMVFNPVGEHGEGEEIVLVNPRVSQYSKKLTLFNEGCLSFPGINADVKRPESVKIDARDINGTRFSVNLSDLPARIFQHEFDHLQGILFFERMTEEVLDSICGQLQALETKYEGMTGLPSPEKIENRRRRKVAVGFGKR*






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