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Report for Sequence Feature Glyma.19g056800

Feature Type:gene_model
Chromosome:Gm19
Start:10351816
stop:10355739
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g056800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G40530.1AT S-adenosyl-L-methionine-dependent methyltransferases superfamily protein JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity JGI N/AIEA
GO:0008757GO-mf S-adenosylmethionine-dependent methyltransferase activity EnsemblGenomesN/AIEA
KOG3045 KOG Predicted RNA methylase involved in rRNA processing JGI N/AIEA
PTHR12787Panther UNCHARACTERIZED JGI N/AIEA
PF05148PFAM Hypothetical methyltransferase JGI N/AIEA

Expression Patterns of Glyma.19g056800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g056800 not represented in the dataset
Glyma.19g056800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g056800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g08930 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g056800
>Glyma.19g056800.2 sequence-type=transcript locus=Glyma.19g056800 ID=Glyma.19g056800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCACTTCTGCAAAGCTCAAACTCTCGGACTCAAACACACAGCACGACGAAACCTAGCAGCCTCACGCCCTCATCGCAGCAGGGACCTAGCCGTCGCCGGAGACGCACTGAGTCTGAGAGCAGCGGTGACTAAATCAGGTTTGTCAAAGAGGAAAAGGAGAGTTACGATTCAGGTTTGAAGCACTAAATCAATCAAAATTGTAGCAATGGGTGAGAGCAAGAAACGAAAGAGACACAGAAACAAACGTGGTGGTAAGGAGGAGCAACCGGTTCTTCCTTCTCCTTGTGCTAAGCGCACAAAGCTGAAGGAACCCTCTTCCTTTCTTCAAAAGATGCGAGCAAGGTTGTCTGGTGGGCATTTCAGGATGATTAATGAAAAGCTCTACACTTGCACTGGGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTGTATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTTAATGTAATTATTAAGTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTGGGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAATACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTGATGGGAACCAACTACCAAAGTTACCTCGAAGAATCGTACAGACTGCTCAAGCCAGGTGGCTGGCTTTTGATAGCAGAAGTAAAGAGCAGGTTTGATCCAAATACTGGAGGAGCAGACCCTAAAAAGTTCTCAAATGCTATTTCCGAGCTAGGTTTCAGCTCTGTAAAACAGGAAAATCAAATTTCTAAGCGGAAGGAAATTGAATGGCCAATGCTTAAACCTTGTTTGTACAAGCGTAGATGAGATTATAATAATTTTTTCCTTTTTTGGTGTATTCAATGTCATCTGGATGAGAGTTAAACAtttttctttttttttttcttttAGATCAGCATGGTTAGTAAATCATCAAAGTTATTGTAGTAATTGGTTTCTCGGCCTCATTATTATTCTTTGATTTTAAGTGCGTATGGGGAGTTTGCTTGGTTTACAAATTTGCTACGACCGTTTATTGAATATCAGATAGG

>Glyma.19g056800.3 sequence-type=transcript locus=Glyma.19g056800 ID=Glyma.19g056800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCACTTCTGCAAAGCTCAAACTCTCGGACTCAAACACACAGCACGACGAAACCTAGCAGCCTCACGCCCTCATCGCAGCAGGGACCTAGCCGTCGCCGGAGACGCACTGAGTCTGAGAGCAGCGGTGACTAAATCAGGTTTGTCAAAGAGGAAAAGGAGAGTTACGATTCAGGTTTGAAGCACTAAATCAATCAAAATTGTAGCAATGGGTGAGAGCAAGAAACGAAAGAGACACAGAAACAAACGTGGTGGTAAGGAGGAGCAACCGGTTCTTCCTTCTCCTTGTGCTAAGCGCACAAAGCTGAAGGAACCCTCTTCCTTTCTTCAAAAGATGCGAGCAAGGTTGTCTGGTGGGCATTTCAGGATGATTAATGAAAAGCTCTACACTTGCACTGGGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTGTATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTTAATGTAATTATTAAGTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTGGGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAATACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTGATGGGAACCAACTACCAAAGTTACCTCGAAGAATCGTACAGACTGCTCAAGCCAGGTGGCTGGCTTTTGATAGCAGAAGTAAAGAGCAGGTTTGATCCAAATACTGGAGGAGCAGACCCTAAAAAGTTCTCAAATGCTATTTCCGAGCTAGGTTTCAGCTCTGTAAAACAGGACTTCTCAAATAAAATGTTTATTTTGTTTTTCTTCACAAAAAAGGTGTACTGCTTATTGCAGTGAATAATGAAAATCAAATTTCTAAGCGGAAGGAAATTGAATGGCCAATGCTTAAACCTTGTTTGTACAAGCGTAGATGAGATTATAATAATTTTTTCCTTTTTTGGTGTATTCAATGTCATCTGGATGAGAGTTAAACAtttttctttttttttttcttttAGATCAGCATGGTTAGTAAATCATCAAAGTTATTGTAGTAATTGGTTTCTCGGCCTCATTATTATTCTTTGATTTTAAGTGCGTATGGGGAGTTTGCTTGGTTTACAAATTTGCTACGACCGTTTATTGAATATCAGATAGG
Coding sequences of Glyma.19g056800
>Glyma.19g056800.1 sequence-type=CDS polypeptide=Glyma.19g056800.1.p locus=Glyma.19g056800 ID=Glyma.19g056800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGAGAGCAAGAAACGAAAGAGACACAGAAACAAACGTGGTGGTAAGGAGGAGCAACCGGTTCTTCCTTCTCCTTGTGCTAAGCGCACAAAGCTGAAGGAACCCTCTTCCTTTCTTCAAAAGATGCGAGCAAGGTTGTCTGGTGGGCATTTCAGGATGATTAATGAAAAGCTCTACACTTGCACTGGGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTGTATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTTAATGTAATTATTAAGTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTGGGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAATACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTGATGGGAACCAACTACCAAAGTTACCTCGAAGAATCGTACAGACTGCTCAAGCCAGGTGGCTGGCTTTTGATAGCAGAAGTAAAGAGCAGGTTTGATCCAAATACTGGAGGAGCAGACCCTAAAAAGTTCTCAAATGCTATTTCCGAGCTAGGTTTCAGCTCTGTAAAACAGGACTTCTCAAATAAAATGTTTATTTTGTTTTTCTTCACAAAAAAGGAAAATCAAATTTCTAAGCGGAAGGAAATTGAATGGCCAATGCTTAAACCTTGTTTGTACAAGCGTAGATGA

>Glyma.19g056800.2 sequence-type=CDS polypeptide=Glyma.19g056800.2.p locus=Glyma.19g056800 ID=Glyma.19g056800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGAGAGCAAGAAACGAAAGAGACACAGAAACAAACGTGGTGGTAAGGAGGAGCAACCGGTTCTTCCTTCTCCTTGTGCTAAGCGCACAAAGCTGAAGGAACCCTCTTCCTTTCTTCAAAAGATGCGAGCAAGGTTGTCTGGTGGGCATTTCAGGATGATTAATGAAAAGCTCTACACTTGCACTGGGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTGTATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTTAATGTAATTATTAAGTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTGGGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAATACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTGATGGGAACCAACTACCAAAGTTACCTCGAAGAATCGTACAGACTGCTCAAGCCAGGTGGCTGGCTTTTGATAGCAGAAGTAAAGAGCAGGTTTGATCCAAATACTGGAGGAGCAGACCCTAAAAAGTTCTCAAATGCTATTTCCGAGCTAGGTTTCAGCTCTGTAAAACAGGAAAATCAAATTTCTAAGCGGAAGGAAATTGAATGGCCAATGCTTAAACCTTGTTTGTACAAGCGTAGATGA

>Glyma.19g056800.3 sequence-type=CDS polypeptide=Glyma.19g056800.3.p locus=Glyma.19g056800 ID=Glyma.19g056800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGAGAGCAAGAAACGAAAGAGACACAGAAACAAACGTGGTGGTAAGGAGGAGCAACCGGTTCTTCCTTCTCCTTGTGCTAAGCGCACAAAGCTGAAGGAACCCTCTTCCTTTCTTCAAAAGATGCGAGCAAGGTTGTCTGGTGGGCATTTCAGGATGATTAATGAAAAGCTCTACACTTGCACTGGGGAGGAGGCGCTAGATTATTTCAAGGAAGAACCTTCGCTATTTGATGTGTATCATACAGGATACAAAACACAAATGTCAAATTGGCCAGAACAGCCAGTTAATGTAATTATTAAGTGGCTGAAAAAACAGAGCCTTTCTTTTGTTGTTGCCGATTTTGGTTGTGGGGAAGCACTCATTGCTAAAAGTGTGAAGAATGAAGTATTCTCTCTAGATCTTGTCTCCAATGATCCAAATGTAATTGCTTGCAACATGGAAAATACTCCCCTTGACTCCTCATCTGTTGACGTCGCCATCTTCTGTCTTTCATTGATGGGAACCAACTACCAAAGTTACCTCGAAGAATCGTACAGACTGCTCAAGCCAGGTGGCTGGCTTTTGATAGCAGAAGTAAAGAGCAGGTTTGATCCAAATACTGGAGGAGCAGACCCTAAAAAGTTCTCAAATGCTATTTCCGAGCTAGGTTTCAGCTCTGTAAAACAGGACTTCTCAAATAAAATGTTTATTTTGTTTTTCTTCACAAAAAAGGTGTACTGCTTATTGCAGTGA
Predicted protein sequences of Glyma.19g056800
>Glyma.19g056800.1.p sequence-type=predicted peptide transcript=Glyma.19g056800.1 locus=Glyma.19g056800 ID=Glyma.19g056800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGESKKRKRHRNKRGGKEEQPVLPSPCAKRTKLKEPSSFLQKMRARLSGGHFRMINEKLYTCTGEEALDYFKEEPSLFDVYHTGYKTQMSNWPEQPVNVIIKWLKKQSLSFVVADFGCGEALIAKSVKNEVFSLDLVSNDPNVIACNMENTPLDSSSVDVAIFCLSLMGTNYQSYLEESYRLLKPGGWLLIAEVKSRFDPNTGGADPKKFSNAISELGFSSVKQDFSNKMFILFFFTKKENQISKRKEIEWPMLKPCLYKRR*

>Glyma.19g056800.2.p sequence-type=predicted peptide transcript=Glyma.19g056800.2 locus=Glyma.19g056800 ID=Glyma.19g056800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGESKKRKRHRNKRGGKEEQPVLPSPCAKRTKLKEPSSFLQKMRARLSGGHFRMINEKLYTCTGEEALDYFKEEPSLFDVYHTGYKTQMSNWPEQPVNVIIKWLKKQSLSFVVADFGCGEALIAKSVKNEVFSLDLVSNDPNVIACNMENTPLDSSSVDVAIFCLSLMGTNYQSYLEESYRLLKPGGWLLIAEVKSRFDPNTGGADPKKFSNAISELGFSSVKQENQISKRKEIEWPMLKPCLYKRR*

>Glyma.19g056800.3.p sequence-type=predicted peptide transcript=Glyma.19g056800.3 locus=Glyma.19g056800 ID=Glyma.19g056800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGESKKRKRHRNKRGGKEEQPVLPSPCAKRTKLKEPSSFLQKMRARLSGGHFRMINEKLYTCTGEEALDYFKEEPSLFDVYHTGYKTQMSNWPEQPVNVIIKWLKKQSLSFVVADFGCGEALIAKSVKNEVFSLDLVSNDPNVIACNMENTPLDSSSVDVAIFCLSLMGTNYQSYLEESYRLLKPGGWLLIAEVKSRFDPNTGGADPKKFSNAISELGFSSVKQDFSNKMFILFFFTKKVYCLLQ*






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