SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research



Report for Sequence Feature Glyma.19g052200

Feature Type:gene_model
Chromosome:Gm19
Start:8505376
stop:8510365
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G56510.1AT RNA-binding (RRM/RBD/RNP motifs) family protein JGI N/AIEA
GO:0000447GO-bp endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) EnsemblGenomesN/AIEA
GO:0000472GO-bp endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) EnsemblGenomesN/AIEA
GO:0000480GO-bp endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) EnsemblGenomesN/AIEA
GO:0034462GO-bp small-subunit processome assembly EnsemblGenomesN/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
KOG3152 KOG TBP-binding protein, activator of basal transcription (contains rrm motif) JGI N/AIEA
PTHR12311Panther FAMILY NOT NAMED JGI N/AIEA
PTHR12311:SF2Panther JGI N/AIEA

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE


View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.



View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


ParalogEvidenceComments
Glyma.05g115100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Corresponding NameAnnotation VersionEvidenceComments
Glyma19g07220 Wm82.a1.v1.1IGC As supplied by JGI


>Glyma.19g052200.2 sequence-type=transcript locus=Glyma.19g052200 ID=Glyma.19g052200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATCTATAAATAAAAAATTGAAGTGAGATTCGACCCTTTTTCAGCTTTCACACGAAGAAGAAGCTGTAAAGAAACGATGAATGCTTCAGACTCAGAGAAAGAAGACGCAGAAATTGAAGCAACAGAAACTGCACCCGATGAAGAGAATGCGAAATTGAAGAAGAAAGAGAAGAAAAAGAAGAAGAAAGCTTCGTCGAAGGATGCAGAGAAGAAGCGCGGCGTGTGCTATATGAGTCGAATCCCCCCTCACATGGACCACGTCAAGCTTCGCCACATTCTCTCTCAGTTCGGCGATATTCAACGAATTTTTCTCGCTCCTCAAGATTCTTCTGTCCAAGTGTCTGCCAAGAGGTCACGTGGATCCCGAGACCAAGCATATTCAGAAGGATGGGTTGAATTCGGTAATAAAAGTGTTGCTAAGAGGGTTGCCAATATGTTAAATGGTGAACAAATAGGGGGTAAGAAGAGGTCATCATTCTACTATGATCTTTGGAATATTAAGTACTTAAGTAAGTTCAAGTGGGATGATCTGACTGAAGAACTAGCCTTAAAGAAAGCTATTCGGGAGCAAAAGCTGGCTGTAGAACTTTCTGCTGCCAAGAGAGAGAGGGATTTCTATCTTTCCAAAGTTGATCAATCACGTGCTTTGAGTGCTATAGAGGGCCGACTAAAGAAGAAGATTCAACAAGACTCAGGACTAGTGGAAAAAGTGATTCGCCATTTCCCTCAAACAAAGCCTATAGCTGCTGACACCAAAAAAAATAAACCTGAGCTCTCTGATGATATATTGGATGCTGTATTTGGTGGCTCGTAATTCATGTATTGATACTTTCACATCAGGAGCCAAAAATCACATTATATTTTCTGTGTCCTTGGTTCCCATAGGCAGGGTGAATCAGTGAAGCTTCTCTGGATGTATTTATTGTAGCGATTTTTCTAGAAAATATTTTTTTTTGTTGATCTAGGTTTTCAAAAGAAAATGCAATCTTCTTATACGTAAAAAACAAGCAATGAAGTTAACCGGAGTTGAAATTTGTGAGTTTGACAGGACTTGGTTATAAATGTCTTTTTGCTTGCACTACAAA

>Glyma.19g052200.1 sequence-type=CDS polypeptide=Glyma.19g052200.1.p locus=Glyma.19g052200 ID=Glyma.19g052200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGCTTCAGACTCAGAGAAAGAAGACGCAGAAATTGAAGCAACAGAAACTGCACCCGATGAAGAGAATGCGAAATTGAAGAAGAAAGAGAAGAAAAAGAAGAAGAAAGCTTCGTCGAAGGATGCAGAGAAGAAGCGCGGCGTGTGCTATATGAGTCGAATCCCCCCTCACATGGACCACGTCAAGCTTCGCCACATTCTCTCTCAGTTCGGCGATATTCAACGAATTTTTCTCGCTCCTCAAGATTCTTCTGTCCAAGTGTCTGCCAAGAGGTCACGTGGATCCCGAGACCAAGCATATTCAGAAGGATGGGTTGAATTCGGTAATAAAAGTGTTGCTAAGAGGGTTGCCAATATGTTAAATGGTGAACAAATAGGGGGTAAGAAGAGGTCATCATTCTACTATGATCTTTGGAATATTAAGTACTTAAGTAAGTTCAAGTGGGATGATCTGACTGAAGAACTAGCCTTAAAGAAAGCTATTCGGGAGCAAAAGCTGGCTGTAGAACTTTCTGCTGCCAAGAGAGAGAGGGATTTCTATCTTTCCAAAGTTGATCAATCACGTGCTTTGAGTGCTATAGAGGGCCGACTAAAGAAGAAGCAGAAGATTCAACAAGACTCAGGACTAGTGGAAAAAGTGATTCGCCATTTCCCTCAAACAAAGCCTATAGCTGCTGACACCAAAAAAAATAAACCTGAGCTCTCTGATGATATATTGGATGCTGTATTTGGTGGCTCGTAA

>Glyma.19g052200.2 sequence-type=CDS polypeptide=Glyma.19g052200.2.p locus=Glyma.19g052200 ID=Glyma.19g052200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGCTTCAGACTCAGAGAAAGAAGACGCAGAAATTGAAGCAACAGAAACTGCACCCGATGAAGAGAATGCGAAATTGAAGAAGAAAGAGAAGAAAAAGAAGAAGAAAGCTTCGTCGAAGGATGCAGAGAAGAAGCGCGGCGTGTGCTATATGAGTCGAATCCCCCCTCACATGGACCACGTCAAGCTTCGCCACATTCTCTCTCAGTTCGGCGATATTCAACGAATTTTTCTCGCTCCTCAAGATTCTTCTGTCCAAGTGTCTGCCAAGAGGTCACGTGGATCCCGAGACCAAGCATATTCAGAAGGATGGGTTGAATTCGGTAATAAAAGTGTTGCTAAGAGGGTTGCCAATATGTTAAATGGTGAACAAATAGGGGGTAAGAAGAGGTCATCATTCTACTATGATCTTTGGAATATTAAGTACTTAAGTAAGTTCAAGTGGGATGATCTGACTGAAGAACTAGCCTTAAAGAAAGCTATTCGGGAGCAAAAGCTGGCTGTAGAACTTTCTGCTGCCAAGAGAGAGAGGGATTTCTATCTTTCCAAAGTTGATCAATCACGTGCTTTGAGTGCTATAGAGGGCCGACTAAAGAAGAAGATTCAACAAGACTCAGGACTAGTGGAAAAAGTGATTCGCCATTTCCCTCAAACAAAGCCTATAGCTGCTGACACCAAAAAAAATAAACCTGAGCTCTCTGATGATATATTGGATGCTGTATTTGGTGGCTCGTAA

>Glyma.19g052200.1.p sequence-type=predicted peptide transcript=Glyma.19g052200.1 locus=Glyma.19g052200 ID=Glyma.19g052200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNASDSEKEDAEIEATETAPDEENAKLKKKEKKKKKKASSKDAEKKRGVCYMSRIPPHMDHVKLRHILSQFGDIQRIFLAPQDSSVQVSAKRSRGSRDQAYSEGWVEFGNKSVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTEELALKKAIREQKLAVELSAAKRERDFYLSKVDQSRALSAIEGRLKKKQKIQQDSGLVEKVIRHFPQTKPIAADTKKNKPELSDDILDAVFGGS*

>Glyma.19g052200.2.p sequence-type=predicted peptide transcript=Glyma.19g052200.2 locus=Glyma.19g052200 ID=Glyma.19g052200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNASDSEKEDAEIEATETAPDEENAKLKKKEKKKKKKASSKDAEKKRGVCYMSRIPPHMDHVKLRHILSQFGDIQRIFLAPQDSSVQVSAKRSRGSRDQAYSEGWVEFGNKSVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTEELALKKAIREQKLAVELSAAKRERDFYLSKVDQSRALSAIEGRLKKKIQQDSGLVEKVIRHFPQTKPIAADTKKNKPELSDDILDAVFGGS*







Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo