Report for Sequence Feature Glyma.19g052200
Feature Type: gene_model
Chromosome: Gm19
Start: 8505376
stop: 8510365
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.19g052200
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G56510.1 AT
RNA-binding (RRM/RBD/RNP motifs) family protein
JGI N/A IEA
GO:0000447 GO-bp
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EnsemblGenomes N/A IEA
GO:0000472 GO-bp
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EnsemblGenomes N/A IEA
GO:0000480 GO-bp
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EnsemblGenomes N/A IEA
GO:0034462 GO-bp
small-subunit processome assembly
EnsemblGenomes N/A IEA
GO:0005730 GO-cc
nucleolus
EnsemblGenomes N/A IEA
GO:0003676 GO-mf
nucleic acid binding
EnsemblGenomes N/A IEA
GO:0003723 GO-mf
RNA binding
EnsemblGenomes N/A IEA
KOG3152
KOG
TBP-binding protein, activator of basal transcription (contains rrm motif)
JGI N/A IEA
PTHR12311 Panther
FAMILY NOT NAMED
JGI N/A IEA
PTHR12311:SF2 Panther
JGI N/A IEA
Expression Patterns of Glyma.19g052200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.19g052200
Paralog Evidence Comments
Glyma.05g115100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.19g052200 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma19g07220 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.19g052200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.19g052200.2 sequence-type=transcript locus=Glyma.19g052200 ID=Glyma.19g052200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATCTATAAATAAAAAATTGAAGTGAGATTCGACCCTTTTTCAGCTTTCACACGAAGAAGAAGCTGTAAAGAAACGATGAATGCTTCAGACTCAGAGAAAGAAGACGCAGAAATTGAAGCAACAGAAACTGCACCCGATGAAGAGAATGCGAAATTGAAGAAGAAAGAGAAGAAAAAGAAGAAGAAAGCTTCGTCGAAGGATGCAGAGAAGAAGCGCGGCGTGTGCTATATGAGTCGAATCCCCCCTCACATGGACCACGTCAAGCTTCGCCACATTCTCTCTCAGTTCGGCGATATTCAACGAATTTTTCTCGCTCCTCAAGATTCTTCTGTCCAAGTGTCTGCCAAGAGGTCACGTGGATCCCGAGACCAAGCATATTCAGAAGGATGGGTTGAATTCGGTAATAAAAGTGTTGCTAAGAGGGTTGCCAATATGTTAAATGGTGAACAAATAGGGGGTAAGAAGAGGTCATCATTCTACTATGATCTTTGGAATATTAAGTACTTAAGTAAGTTCAAGTGGGATGATCTGACTGAAGAACTAGCCTTAAAGAAAGCTATTCGGGAGCAAAAGCTGGCTGTAGAACTTTCTGCTGCCAAGAGAGAGAGGGATTTCTATCTTTCCAAAGTTGATCAATCACGTGCTTTGAGTGCTATAGAGGGCCGACTAAAGAAGAAGATTCAACAAGACTCAGGACTAGTGGAAAAAGTGATTCGCCATTTCCCTCAAACAAAGCCTATAGCTGCTGACACCAAAAAAAATAAACCTGAGCTCTCTGATGATATATTGGATGCTGTATTTGGTGGCTCGTAATTCATGTATTGATACTTTCACATCAGGAGCCAAAAATCACATTATATTTTCTGTGTCCTTGGTTCCCATAGGCAGGGTGAATCAGTGAAGCTTCTCTGGATGTATTTATTGTAGCGATTTTTCTAGAAAATATTTTTTTTTGTTGATCTAGGTTTTCAAAAGAAAATGCAATCTTCTTATACGTAAAAAACAAGCAATGAAGTTAACCGGAGTTGAAATTTGTGAGTTTGACAGGACTTGGTTATAAATGTCTTTTTGCTTGCACTACAAA
Coding sequences of Glyma.19g052200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.19g052200.1 sequence-type=CDS polypeptide=Glyma.19g052200.1.p locus=Glyma.19g052200 ID=Glyma.19g052200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGCTTCAGACTCAGAGAAAGAAGACGCAGAAATTGAAGCAACAGAAACTGCACCCGATGAAGAGAATGCGAAATTGAAGAAGAAAGAGAAGAAAAAGAAGAAGAAAGCTTCGTCGAAGGATGCAGAGAAGAAGCGCGGCGTGTGCTATATGAGTCGAATCCCCCCTCACATGGACCACGTCAAGCTTCGCCACATTCTCTCTCAGTTCGGCGATATTCAACGAATTTTTCTCGCTCCTCAAGATTCTTCTGTCCAAGTGTCTGCCAAGAGGTCACGTGGATCCCGAGACCAAGCATATTCAGAAGGATGGGTTGAATTCGGTAATAAAAGTGTTGCTAAGAGGGTTGCCAATATGTTAAATGGTGAACAAATAGGGGGTAAGAAGAGGTCATCATTCTACTATGATCTTTGGAATATTAAGTACTTAAGTAAGTTCAAGTGGGATGATCTGACTGAAGAACTAGCCTTAAAGAAAGCTATTCGGGAGCAAAAGCTGGCTGTAGAACTTTCTGCTGCCAAGAGAGAGAGGGATTTCTATCTTTCCAAAGTTGATCAATCACGTGCTTTGAGTGCTATAGAGGGCCGACTAAAGAAGAAGCAGAAGATTCAACAAGACTCAGGACTAGTGGAAAAAGTGATTCGCCATTTCCCTCAAACAAAGCCTATAGCTGCTGACACCAAAAAAAATAAACCTGAGCTCTCTGATGATATATTGGATGCTGTATTTGGTGGCTCGTAA
>Glyma.19g052200.2 sequence-type=CDS polypeptide=Glyma.19g052200.2.p locus=Glyma.19g052200 ID=Glyma.19g052200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATGCTTCAGACTCAGAGAAAGAAGACGCAGAAATTGAAGCAACAGAAACTGCACCCGATGAAGAGAATGCGAAATTGAAGAAGAAAGAGAAGAAAAAGAAGAAGAAAGCTTCGTCGAAGGATGCAGAGAAGAAGCGCGGCGTGTGCTATATGAGTCGAATCCCCCCTCACATGGACCACGTCAAGCTTCGCCACATTCTCTCTCAGTTCGGCGATATTCAACGAATTTTTCTCGCTCCTCAAGATTCTTCTGTCCAAGTGTCTGCCAAGAGGTCACGTGGATCCCGAGACCAAGCATATTCAGAAGGATGGGTTGAATTCGGTAATAAAAGTGTTGCTAAGAGGGTTGCCAATATGTTAAATGGTGAACAAATAGGGGGTAAGAAGAGGTCATCATTCTACTATGATCTTTGGAATATTAAGTACTTAAGTAAGTTCAAGTGGGATGATCTGACTGAAGAACTAGCCTTAAAGAAAGCTATTCGGGAGCAAAAGCTGGCTGTAGAACTTTCTGCTGCCAAGAGAGAGAGGGATTTCTATCTTTCCAAAGTTGATCAATCACGTGCTTTGAGTGCTATAGAGGGCCGACTAAAGAAGAAGATTCAACAAGACTCAGGACTAGTGGAAAAAGTGATTCGCCATTTCCCTCAAACAAAGCCTATAGCTGCTGACACCAAAAAAAATAAACCTGAGCTCTCTGATGATATATTGGATGCTGTATTTGGTGGCTCGTAA
Predicted protein sequences of Glyma.19g052200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.19g052200.1.p sequence-type=predicted peptide transcript=Glyma.19g052200.1 locus=Glyma.19g052200 ID=Glyma.19g052200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNASDSEKEDAEIEATETAPDEENAKLKKKEKKKKKKASSKDAEKKRGVCYMSRIPPHMDHVKLRHILSQFGDIQRIFLAPQDSSVQVSAKRSRGSRDQAYSEGWVEFGNKSVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTEELALKKAIREQKLAVELSAAKRERDFYLSKVDQSRALSAIEGRLKKKQKIQQDSGLVEKVIRHFPQTKPIAADTKKNKPELSDDILDAVFGGS*
>Glyma.19g052200.2.p sequence-type=predicted peptide transcript=Glyma.19g052200.2 locus=Glyma.19g052200 ID=Glyma.19g052200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNASDSEKEDAEIEATETAPDEENAKLKKKEKKKKKKASSKDAEKKRGVCYMSRIPPHMDHVKLRHILSQFGDIQRIFLAPQDSSVQVSAKRSRGSRDQAYSEGWVEFGNKSVAKRVANMLNGEQIGGKKRSSFYYDLWNIKYLSKFKWDDLTEELALKKAIREQKLAVELSAAKRERDFYLSKVDQSRALSAIEGRLKKKIQQDSGLVEKVIRHFPQTKPIAADTKKNKPELSDDILDAVFGGS*