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Report for Sequence Feature Glyma.19g046600

Feature Type:gene_model
Chromosome:Gm19
Start:7189031
stop:7190508
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g046600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G38410.1AT Ribulose bisphosphate carboxylase (small chain) family protein JGI N/AIEA
AT5G38410.3AT Ribulose bisphosphate carboxylase (small chain) family protein JGI N/AIEA
GO:0009853GO-bp photorespiration EnsemblGenomesN/AIEA
GO:0015977GO-bp carbon fixation EnsemblGenomesN/AIEA
GO:0015979GO-bp photosynthesis EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0004497GO-mf monooxygenase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016829GO-mf lyase activity EnsemblGenomesN/AIEA
GO:0016984GO-mf ribulose-bisphosphate carboxylase activity EnsemblGenomesN/AIEA
PF00101PFAM Ribulose bisphosphate carboxylase, small chain JGI N/AIEA
PF12338PFAM Ribulose-1,5-bisphosphate carboxylase small subunit JGI N/AIEA
CALVIN-PWYSoyCyc9 Calvin-Benson-Bassham cycle Plant Metabolic Network ISS
PHOTOALL-PWYSoyCyc9 oxygenic photosynthesis Plant Metabolic Network ISS
PWY-5723SoyCyc9 Rubisco shunt Plant Metabolic Network ISS
GN7V-46977SoyCyc9-rxn ribulose-bisphosphate carboxylase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g046600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g046600
ParalogEvidenceComments
Glyma.13g046200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g046600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g06340 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g046600
>Glyma.19g046600.2 sequence-type=transcript locus=Glyma.19g046600 ID=Glyma.19g046600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGTAATGTCATCACTTATTCAATCCAACGGTTGTAACTTCTCAGCAACCAATCCCCTCCATTTCACACCATCGGATTAGTACTACACAAATCACACTATTATATATAGTAAGTTTGAGCAGAAGCTTGGATATCTGGCAGCAGAAGAACAAGTAGTTGAGAACTAAGAAGGAGAAGCAAATGGCTTCCTCAATGATCTCTTCCCCAGCTGTTACCACTGTCAACCGTGCCGGTGCCGGCATGGTTGCTCCATTCACTGGCCTCAAGTCCATGGCTGGCTTCCCCACCAGAAAGACCAACAATGACATTACCTCCATTGCTAGCAACGGTGGAAGAGTGCAATGCATGCAGGTGTGGCCACCAGTTGGCAAGAAGAAGTTTGAGACTCTTTCCTACCTGCCAGACCTTGATGATGCACAATTGGCAAAGGAAGTAGAATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCTAAGACTGCATACCCCAACGGCTTCATCCGTATCATCGGATTCGACAACGTTCGCCAAGTGCAGTGCATCAGCTTCATCGCCTACAAGCCCCCAGGCTTCTAAGTGTGAAAAATTTGCAAAGCATTTGTAGCCGCCACCCCACTTTGTTTGTTTGTACTTAAACTACATTCCCATTTGTTTTTGCTTTTTGAGATTTCATCATCCTGTATTTTTGGTTTCTGTTTTCGGACTTCAATGGAAATTAATGGATGAGAACTAATGAATAAGCTATTGTGTTGTGTTGCTTTGTTTCAAAATAACTTCAATAACCCATCGTCCTTGCATTTCTCTCTACTGGGCTGAAATTAATCATTTCTAAATTTAAGTTAATTAA

>Glyma.19g046600.3 sequence-type=transcript locus=Glyma.19g046600 ID=Glyma.19g046600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGTAATGTCATCACTTATTCAATCCAACGGTTGTAACTTCTCAGCAACCAATCCCCTCCATTTCACACCATCGGATTAGTACTACACAAATCACACTATTATATATAGTAAGTTTGAGCAGAAGCTTGGATATCTGGCAGCAGAAGAACAAGTAGTTGAGAACTAAGAAGGAGAAGCAAATGGCTTCCTCAATGATCTCTTCCCCAGCTGTTACCACTGTCAACCGTGCCGGTGCCGGCATGGTTGCTCCATTCACTGGCCTCAAGTCCATGGCTGGCTTCCCCACCAGAAAGACCAACAATGACATTACCTCCATTGCTAGCAACGGTGGAAGAGTGCAATGCATGCAGGTGTGGCCACCAGTTGGCAAGAAGAAGTTTGAGACTCTTTCCTACCTGCCAGACCTTGATGATGCACAATTGGCAAAGGAAGTAGAATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAGCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCTAAGACTGCATACCCCAACGGCTTCATCCGTATCATCGGATTCGACAACGTTCGCCAAGTGCAGTGCATCAGCTTCTAAGTGTGAAAAATTTGCAAAGCATTTGTAGCCGCCACCCCACTTTGTTTGTTTGTACTTAAACTACATTCCCATTTGTTTTTGCTTTTTGAGATTTCATCATCCTGTATTTTTGGTTTCTGTTTTCGGACTTCAATGGAAATTAATGGATGAGAACTAATGAATAAGCTATTGTGTTGTGTTGCTTTGTTTCAAAATAACTTCAATAACCCATCGTCCTTGCATTTCTCTCTACTGGGCTGAAATTAATCATTTCTAAATTTAAGTTAATTAA
Coding sequences of Glyma.19g046600
>Glyma.19g046600.1 sequence-type=CDS polypeptide=Glyma.19g046600.1.p locus=Glyma.19g046600 ID=Glyma.19g046600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCCTCAATGATCTCTTCCCCAGCTGTTACCACTGTCAACCGTGCCGGTGCCGGCATGGTTGCTCCATTCACTGGCCTCAAGTCCATGGCTGGCTTCCCCACCAGAAAGACCAACAATGACATTACCTCCATTGCTAGCAACGGTGGAAGAGTGCAATGCATGCAGGTGTGGCCACCAGTTGGCAAGAAGAAGTTTGAGACTCTTTCCTACCTGCCAGACCTTGATGATGCACAATTGGCAAAGGAAGTAGAATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAGCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCTAAGACTGCATACCCCAACGGCTTCATCCGTATCATCGGATTCGACAACGTTCGCCAAGTGCAGTGCATCAGCTTCATCGCCTACAAGCCCCCAGGCTTCTAA

>Glyma.19g046600.2 sequence-type=CDS polypeptide=Glyma.19g046600.2.p locus=Glyma.19g046600 ID=Glyma.19g046600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCCTCAATGATCTCTTCCCCAGCTGTTACCACTGTCAACCGTGCCGGTGCCGGCATGGTTGCTCCATTCACTGGCCTCAAGTCCATGGCTGGCTTCCCCACCAGAAAGACCAACAATGACATTACCTCCATTGCTAGCAACGGTGGAAGAGTGCAATGCATGCAGGTGTGGCCACCAGTTGGCAAGAAGAAGTTTGAGACTCTTTCCTACCTGCCAGACCTTGATGATGCACAATTGGCAAAGGAAGTAGAATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGA

>Glyma.19g046600.3 sequence-type=CDS polypeptide=Glyma.19g046600.3.p locus=Glyma.19g046600 ID=Glyma.19g046600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTCCTCAATGATCTCTTCCCCAGCTGTTACCACTGTCAACCGTGCCGGTGCCGGCATGGTTGCTCCATTCACTGGCCTCAAGTCCATGGCTGGCTTCCCCACCAGAAAGACCAACAATGACATTACCTCCATTGCTAGCAACGGTGGAAGAGTGCAATGCATGCAGGTGTGGCCACCAGTTGGCAAGAAGAAGTTTGAGACTCTTTCCTACCTGCCAGACCTTGATGATGCACAATTGGCAAAGGAAGTAGAATACCTTCTTAGGAAGGGATGGATTCCTTGCTTGGAATTCGAGTTGGAGCACGGTTTCGTGTACCGTGAGCACAACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCTATGTTTGGTTGCACTGATGCTTCTCAGGTGTTGAAGGAGCTTCAAGAGGCTAAGACTGCATACCCCAACGGCTTCATCCGTATCATCGGATTCGACAACGTTCGCCAAGTGCAGTGCATCAGCTTCTAA
Predicted protein sequences of Glyma.19g046600
>Glyma.19g046600.1.p sequence-type=predicted peptide transcript=Glyma.19g046600.1 locus=Glyma.19g046600 ID=Glyma.19g046600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPGF*

>Glyma.19g046600.2.p sequence-type=predicted peptide transcript=Glyma.19g046600.2 locus=Glyma.19g046600 ID=Glyma.19g046600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEVTRILRWTLLDHVEAAYVWLH*

>Glyma.19g046600.3.p sequence-type=predicted peptide transcript=Glyma.19g046600.3 locus=Glyma.19g046600 ID=Glyma.19g046600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISF*






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