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Report for Sequence Feature Glyma.19g046100

Feature Type:gene_model
Chromosome:Gm19
Start:6972618
stop:6982502
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g046100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G16040.1AT Regulator of chromosome condensation (RCC1) family protein JGI N/AIEA
PTHR22870Panther REGULATOR OF CHROMOSOME CONDENSATION JGI N/AIEA
PTHR22870:SF20Panther JGI N/AIEA
PF00415PFAM Regulator of chromosome condensation (RCC1) repeat JGI N/AIEA

Expression Patterns of Glyma.19g046100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g046100 not represented in the dataset
Glyma.19g046100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g046100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g06180 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g046100
>Glyma.19g046100.1 sequence-type=CDS polypeptide=Glyma.19g046100.1.p locus=Glyma.19g046100 ID=Glyma.19g046100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATTCTCACTCACACATCATTGCTTGGGGCTCTGGTGAAGATGGTCAGCTAGGAATCGGAAGCAACGAAGAGAAAGAATGGGTCTGCCTCGTCAAAGCCCTCCAGCCCCACCGTATTCGCTCCGTCGTCGCCGGCAGCAGAAACTCCCTCGCCATCGCTGACGACGGCAAATTGTTCACTTGGGGTTGGAACCAAAGGGCCACACTTGGGCACCCTGCTGAGACCAAGTCTGAGAACAAGACTGAGAACACTCCCAGCCAGGTCAAGGCTCTTTCCAGTGTTAAAATTGTTCAGGCGGCTATTGGGGGGTGGCACTGTTTGGCCGTTGATGATCAGGGCAGAGCTTATGCTTGGGGTGGAAATGAATACGGGCAGTGTGGCGAAGAACCCGAGCGCAAGGATGGCACTGGTAGACCTTTAAGGAGAGATATAGAGATCCCTCAGCGCTGTGCTCCTAAGCTTGTTGTTCGGCAGGTTGCTGCAGGAGGAACTCACTCAGTGGTACTTACACGAGAAGGGCATGTTTGGACATGGGGTCAGCCATGGCCGCCTGGTGACATAAAACAGATTTCAGTCCCTGTTCGGGTTCAAGGTCTTGAAAATGTGAGGCTCATTGCTGTTGGAGCATTTCATAATTTGGCTCTTCAAGAGGATGGAACTTTATGGGCATGGGGTAATAATGAATATGGACAACTTGGAACTGGAGATACTCAGCCTAGATCACAACCTATTCGTGTTCAAGGACTTTCTGATCTTACCTTGGTAGATATTGCAGCTGGTGGATGGCATTCTACTGCATTGACAGATGAAGGAGAGGTATATGGCTGGGGAAGGGGGGAGCATGGCAGGCTTGGATTTGGTGATAGTGACAAGAGCAGTAAAATGGTACCCCAGAAGGTTCAACTTTTAGCTGGAGAAGATATTGTTCAGGTGTCCTGTGGAGGTACTCACTCAGTTGCATTAACCCGGGACGGGCACATGTTTTCTTTTGGTAGAGGTGACCATGGACGTCTTGGATATGGTAGGAAAGTCACCACTGGTCAACCAATGGAGGTACCTATAGACCTCCCTCCCCCACAGGATCCCAGTGGCACTGCAACTGAGGGACATTGGATAGCTAAACTAGTTGCTTGTGGTGGCCGGCATACCCTGGCAATAGTAGAATGGAAATCAAATGAATCTTAA
Predicted protein sequences of Glyma.19g046100
>Glyma.19g046100.1.p sequence-type=predicted peptide transcript=Glyma.19g046100.1 locus=Glyma.19g046100 ID=Glyma.19g046100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDSHSHIIAWGSGEDGQLGIGSNEEKEWVCLVKALQPHRIRSVVAGSRNSLAIADDGKLFTWGWNQRATLGHPAETKSENKTENTPSQVKALSSVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDGTGRPLRRDIEIPQRCAPKLVVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLENVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQPIRVQGLSDLTLVDIAAGGWHSTALTDEGEVYGWGRGEHGRLGFGDSDKSSKMVPQKVQLLAGEDIVQVSCGGTHSVALTRDGHMFSFGRGDHGRLGYGRKVTTGQPMEVPIDLPPPQDPSGTATEGHWIAKLVACGGRHTLAIVEWKSNES*






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