Glyma.19g043000

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Report for Sequence Feature Glyma.19g043000

Feature Type:	gene_model
Chromosome:	Gm19
Start:	6272211
stop:	6276348
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g043000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G38710.1	AT	Methylenetetrahydrofolate reductase family protein	JGI	N/A	IEA
GO:0006537	GO-bp	glutamate biosynthetic process	JGI	N/A	IEA
GO:0006560	GO-bp	proline metabolic process	EnsemblGenomes	N/A	IEA
GO:0006562	GO-bp	proline catabolic process	EnsemblGenomes	N/A	IEA
GO:0006562	GO-bp	proline catabolic process	JGI	N/A	IEA
GO:0010133	GO-bp	proline catabolic process to glutamate	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0005739	GO-cc	mitochondrion	EnsemblGenomes	N/A	IEA
GO:0004657	GO-mf	proline dehydrogenase activity	EnsemblGenomes	N/A	IEA
GO:0004657	GO-mf	proline dehydrogenase activity	JGI	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0071949	GO-mf	FAD binding	EnsemblGenomes	N/A	IEA
KOG0186	KOG	Proline oxidase	JGI	N/A	IEA
PTHR13914	Panther	PROLINE OXIDASE	JGI	N/A	IEA
PF01619	PFAM	Proline dehydrogenase	JGI	N/A	IEA
PROUT-PWY	SoyCyc9	L-proline degradation	Plant Metabolic Network		ISS
PWY-6922	SoyCyc9	L-N^δ-acetylornithine biosynthesis	Plant Metabolic Network		ISS
GN7V-61794	SoyCyc9-rxn	proline dehydrogenase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.19g043000

Locus	Gene Symbol	Protein Name
	PDH	proline dehydrogenase

Expression Patterns of Glyma.19g043000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g043000 not represented in the dataset	Glyma.19g043000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g043000

Paralog	Evidence	Comments
Glyma.13g049700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g043000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g05570	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g043000

Limit To All Plant Sequences

>Glyma.19g043000.2 sequence-type=transcript locus=Glyma.19g043000 ID=Glyma.19g043000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTTACATAGATTACATCGAATCCCGTTGATACTACTATTCAAGGAAAAGTAAGAAAATGATTATTGTTTACTAAAAATAAAAAAGGATAACCCAAGTTGACCACTCTAATCTTATCACGCACACCCTTACACGATGCAACTTACCCAACTTAAACGTTCTAGTGTTGTACTTTCCTTACTTAACCCGACCCATTTCCTCACCTTCGCGCTATAAATCATATCACATCTTCCACCATTTAGAACAACATAACATAAGAAAAACACACACACAAACACCCTTTGAGTTCATTAACCTCTTCAGAaaaaacaacaacaacaacaaaaaaaaacatcatcatcaaaaaaacTTCCGAGAGTTTAATGGCAACACGCGTGATCCCTCCAAGAATCCTCAAGAAGCTCCGTTACAACACAACAACCAAGCCACTCAACGCTGCCCACCCCTCAATCTCTCCAGTCATCGCCCCACCGTCACTCTTCGAGAGGTCGCCGTCCCCTGTCGCGGATGCTGTTTCAACAACATCCACGACTATGGAGACGGCGAATCTCAACCTCGACGACGCGGAGCGGCTTTTCGCGTCAGTATCGACGGAAAAGCTGCTCCGGTCGTCCGCGGTTTTGCATGCGACGGCGGTGGGGCCCATGGTAGACCTGGGAATGTGGTTGATGAAGTCTCCGGTGTTCCAGACCGGGCTGCCGAAGGATCTCATCATGGCCGCCACGAAGGAGACGTTCTTCTCGCACTTCTGCGCCGGCGAGGACGCCGCCGCCGCCGGACGGAGCATCAGCGCGCTCAAGGAGGCCGGCTTACGTGGCATGCTGGTGTACGGTGTGGAAGACGCGCATGAAAACGATGGGTGTGATAGAAACCTCAAAGGGTTCCTTCACACTGTGGATGTTAGCAAATCGCTTCCACCATCCTCTGTGAGTTTTGTCATTGTGAAAATCACTGCAATATGCCCCATGACATTGCTTGAAAGAATGAGTGATCTTCTAAGATGGCAACAGAAAGATCCTTCATTTGTTTTGCCATGGAAGCAAGATTCGCTTCCAATTTTTGCAGAATCTAGCCCTTTGTATCACACGCAGAAAAGACCAGAGCCTCTAACCCCAGAAGAAGAGAGTGATCTTCAACTTGCCAACCAGAGACTCCTTGAACTTTGCCAAAGATGTGAGGAAGCCAATATGCCTTTGTTGGTTGATGCAGAACACACCACAGTTCAACCGGCTATCGATTACTTCACATACTCTTCTTCCATAAGGCACAATAAGGATGACAACCCCATTGTGTTTGGAACCATTCAGACTTATTTGAAAGATGCCAAGGAGAGGTTGTTGCTCACAACAAAGGCAGCAGAAAAAATGGGAGTTCCATTGGGGTTCAAATTGGTTAGAGGTGCCTACATGTCCACAGAGAGTAAATTGGCTGAGTCATTTGGGTATGCATCCCCAATTCACAATACCATTCAAGAAACACACAATTGCTTCAATGGCTGCTCATCATTTCTTCTTGAGAAGATTGCTAATGGACCCGGTTCAATTTCAGTTGTTCTTGCAACTCACAATATTGAATCAGGGAAATTGGCTGCAGCAAAAGCATATGAATTGGGGGTTGGAAAGGTAAACCACAAGCTAGAATTTGCACAACTGTATGGAATGTCAGAGGCACTTTCCTTTGGTTTGAGCAATGCAGGGTTTCAAGTTAGCAAGTATATGCCATTTGGGCCGGTAGATATGGTTATGCCTTACCTTCTGAGAAGGGCTGAAGAAAATAGAGGGCTTTTGGCTGCATCAGGTTTTGATAGGCAATTGATGAGGTAAGTTAAGATTTTTATTTCATTAATCTCTTAGCATGTGACAGAAAATATTGGATTTGATGTTATGGTAACAATGGTCGTTTCTTTATGAACAGAAAGGAGTTGGGAAGAAGATTAAAAGCTGCAATGTTCTAAATTTGTCAGAAATCAGGATTCATTGACTTTTTGTACAAATTAGAGAGTTTTGTAATGTGAAGAAATTGTGCATTCAATCAAATGAAATTCTGCTTTGTTATGTAGGTTTTGTTGGAAATGCAACGGATCTTTTGTGTTGAGCAATAAACTTATGCTTAAATTGGGAAAGTGTAAAACCAGGTTAGAAAAATGAGTAAGAAAAACAAGAATAGTTTTTAAGTCATGGGTTGTCCAAGTTTCTCAATGTAGCTttaagtcaagttaattaattagttccgttcatttaatttTTATACAATCGTTCCGCGTTCAAAGACTTAAAAAAATTGCCATGTGGATGCAAGTGGGTTAACTTACACACAACAATCAGATTAAAGTTCTCACTAACAAGTTGCACACAAAGCAATTACTAAATGAAAAGTCTTTTAAGTAAAAAAGAGTGTATTAGTATAAGAGATTACAGTGCAAAAAATGGTCAAGTGTCACCTTTGAAAAACAAGAAAAAAATATATAGTAATT

Coding sequences of Glyma.19g043000

Limit To All Plant Sequences

>Glyma.19g043000.1 sequence-type=CDS polypeptide=Glyma.19g043000.1.p locus=Glyma.19g043000 ID=Glyma.19g043000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAACACGCGTGATCCCTCCAAGAATCCTCAAGAAGCTCCGTTACAACACAACAACCAAGCCACTCAACGCTGCCCACCCCTCAATCTCTCCAGTCATCGCCCCACCGTCACTCTTCGAGAGGTCGCCGTCCCCTGTCGCGGATGCTGTTTCAACAACATCCACGACTATGGAGACGGCGAATCTCAACCTCGACGACGCGGAGCGGCTTTTCGCGTCAGTATCGACGGAAAAGCTGCTCCGGTCGTCCGCGGTTTTGCATGCGACGGCGGTGGGGCCCATGGTAGACCTGGGAATGTGGTTGATGAAGTCTCCGGTGTTCCAGACCGGGCTGCCGAAGGATCTCATCATGGCCGCCACGAAGGAGACGTTCTTCTCGCACTTCTGCGCCGGCGAGGACGCCGCCGCCGCCGGACGGAGCATCAGCGCGCTCAAGGAGGCCGGCTTACGTGGCATGCTGGTGTACGGTGTGGAAGACGCGCATGAAAACGATGGGTGTGATAGAAACCTCAAAGGGTTCCTTCACACTGTGGATGTTAGCAAATCGCTTCCACCATCCTCTGTGAGTTTTGTCATTGTGAAAATCACTGCAATATGCCCCATGACATTGCTTGAAAGAATGAGTGATCTTCTAAGATGGCAACAGAAAGATCCTTCATTTGTTTTGCCATGGAAGCAAGATTCGCTTCCAATTTTTGCAGAATCTAGCCCTTTGTATCACACGCAGAAAAGACCAGAGCCTCTAACCCCAGAAGAAGAGAGTGATCTTCAACTTGCCAACCAGAGACTCCTTGAACTTTGCCAAAGATGTGAGGAAGCCAATATGCCTTTGTTGGTTGATGCAGAACACACCACAGTTCAACCGGCTATCGATTACTTCACATACTCTTCTTCCATAAGGCACAATAAGGATGACAACCCCATTGTGTTTGGAACCATTCAGACTTATTTGAAAGATGCCAAGGAGAGGTTGTTGCTCACAACAAAGGCAGCAGAAAAAATGGGAGTTCCATTGGGGTTCAAATTGGTTAGAGGTGCCTACATGTCCACAGAGAGTAAATTGGCTGAGTCATTTGGGTATGCATCCCCAATTCACAATACCATTCAAGAAACACACAATTGCTTCAATGGCTGCTCATCATTTCTTCTTGAGAAGATTGCTAATGGACCCGGTTCAATTTCAGTTGTTCTTGCAACTCACAATATTGAATCAGGGAAATTGGCTGCAGCAAAAGCATATGAATTGGGGGTTGGAAAGGTAAACCACAAGCTAGAATTTGCACAACTGTATGGAATGTCAGAGGCACTTTCCTTTGGTTTGAGCAATGCAGGGTTTCAAGTTAGCAAGTATATGCCATTTGGGCCGGTAGATATGGTTATGCCTTACCTTCTGAGAAGGGCTGAAGAAAATAGAGGGCTTTTGGCTGCATCAGGTTTTGATAGGCAATTGATGAGAAAGGAGTTGGGAAGAAGATTAAAAGCTGCAATGTTCTAA

>Glyma.19g043000.2 sequence-type=CDS polypeptide=Glyma.19g043000.2.p locus=Glyma.19g043000 ID=Glyma.19g043000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAACACGCGTGATCCCTCCAAGAATCCTCAAGAAGCTCCGTTACAACACAACAACCAAGCCACTCAACGCTGCCCACCCCTCAATCTCTCCAGTCATCGCCCCACCGTCACTCTTCGAGAGGTCGCCGTCCCCTGTCGCGGATGCTGTTTCAACAACATCCACGACTATGGAGACGGCGAATCTCAACCTCGACGACGCGGAGCGGCTTTTCGCGTCAGTATCGACGGAAAAGCTGCTCCGGTCGTCCGCGGTTTTGCATGCGACGGCGGTGGGGCCCATGGTAGACCTGGGAATGTGGTTGATGAAGTCTCCGGTGTTCCAGACCGGGCTGCCGAAGGATCTCATCATGGCCGCCACGAAGGAGACGTTCTTCTCGCACTTCTGCGCCGGCGAGGACGCCGCCGCCGCCGGACGGAGCATCAGCGCGCTCAAGGAGGCCGGCTTACGTGGCATGCTGGTGTACGGTGTGGAAGACGCGCATGAAAACGATGGGTGTGATAGAAACCTCAAAGGGTTCCTTCACACTGTGGATGTTAGCAAATCGCTTCCACCATCCTCTGTGAGTTTTGTCATTGTGAAAATCACTGCAATATGCCCCATGACATTGCTTGAAAGAATGAGTGATCTTCTAAGATGGCAACAGAAAGATCCTTCATTTGTTTTGCCATGGAAGCAAGATTCGCTTCCAATTTTTGCAGAATCTAGCCCTTTGTATCACACGCAGAAAAGACCAGAGCCTCTAACCCCAGAAGAAGAGAGTGATCTTCAACTTGCCAACCAGAGACTCCTTGAACTTTGCCAAAGATGTGAGGAAGCCAATATGCCTTTGTTGGTTGATGCAGAACACACCACAGTTCAACCGGCTATCGATTACTTCACATACTCTTCTTCCATAAGGCACAATAAGGATGACAACCCCATTGTGTTTGGAACCATTCAGACTTATTTGAAAGATGCCAAGGAGAGGTTGTTGCTCACAACAAAGGCAGCAGAAAAAATGGGAGTTCCATTGGGGTTCAAATTGGTTAGAGGTGCCTACATGTCCACAGAGAGTAAATTGGCTGAGTCATTTGGGTATGCATCCCCAATTCACAATACCATTCAAGAAACACACAATTGCTTCAATGGCTGCTCATCATTTCTTCTTGAGAAGATTGCTAATGGACCCGGTTCAATTTCAGTTGTTCTTGCAACTCACAATATTGAATCAGGGAAATTGGCTGCAGCAAAAGCATATGAATTGGGGGTTGGAAAGGTAAACCACAAGCTAGAATTTGCACAACTGTATGGAATGTCAGAGGCACTTTCCTTTGGTTTGAGCAATGCAGGGTTTCAAGTTAGCAAGTATATGCCATTTGGGCCGGTAGATATGGTTATGCCTTACCTTCTGAGAAGGGCTGAAGAAAATAGAGGGCTTTTGGCTGCATCAGGTTTTGATAGGCAATTGATGAGGTAA

Predicted protein sequences of Glyma.19g043000

Limit To All Plant Sequences

>Glyma.19g043000.1.p sequence-type=predicted peptide transcript=Glyma.19g043000.1 locus=Glyma.19g043000 ID=Glyma.19g043000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATRVIPPRILKKLRYNTTTKPLNAAHPSISPVIAPPSLFERSPSPVADAVSTTSTTMETANLNLDDAERLFASVSTEKLLRSSAVLHATAVGPMVDLGMWLMKSPVFQTGLPKDLIMAATKETFFSHFCAGEDAAAAGRSISALKEAGLRGMLVYGVEDAHENDGCDRNLKGFLHTVDVSKSLPPSSVSFVIVKITAICPMTLLERMSDLLRWQQKDPSFVLPWKQDSLPIFAESSPLYHTQKRPEPLTPEEESDLQLANQRLLELCQRCEEANMPLLVDAEHTTVQPAIDYFTYSSSIRHNKDDNPIVFGTIQTYLKDAKERLLLTTKAAEKMGVPLGFKLVRGAYMSTESKLAESFGYASPIHNTIQETHNCFNGCSSFLLEKIANGPGSISVVLATHNIESGKLAAAKAYELGVGKVNHKLEFAQLYGMSEALSFGLSNAGFQVSKYMPFGPVDMVMPYLLRRAEENRGLLAASGFDRQLMRKELGRRLKAAMF*

>Glyma.19g043000.2.p sequence-type=predicted peptide transcript=Glyma.19g043000.2 locus=Glyma.19g043000 ID=Glyma.19g043000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MATRVIPPRILKKLRYNTTTKPLNAAHPSISPVIAPPSLFERSPSPVADAVSTTSTTMETANLNLDDAERLFASVSTEKLLRSSAVLHATAVGPMVDLGMWLMKSPVFQTGLPKDLIMAATKETFFSHFCAGEDAAAAGRSISALKEAGLRGMLVYGVEDAHENDGCDRNLKGFLHTVDVSKSLPPSSVSFVIVKITAICPMTLLERMSDLLRWQQKDPSFVLPWKQDSLPIFAESSPLYHTQKRPEPLTPEEESDLQLANQRLLELCQRCEEANMPLLVDAEHTTVQPAIDYFTYSSSIRHNKDDNPIVFGTIQTYLKDAKERLLLTTKAAEKMGVPLGFKLVRGAYMSTESKLAESFGYASPIHNTIQETHNCFNGCSSFLLEKIANGPGSISVVLATHNIESGKLAAAKAYELGVGKVNHKLEFAQLYGMSEALSFGLSNAGFQVSKYMPFGPVDMVMPYLLRRAEENRGLLAASGFDRQLMR*

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