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Report for Sequence Feature Glyma.19g042400

Feature Type:gene_model
Chromosome:Gm19
Start:6177407
stop:6180442
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g042400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G38530.1AT tryptophan synthase beta type 2 JGI N/AIEA
GO:0000162GO-bp tryptophan biosynthetic process EnsemblGenomesN/AIEA
GO:0004834GO-mf tryptophan synthase activity EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding EnsemblGenomesN/AIEA
PTHR10314Panther SER/THR DEHYDRATASE, TRP SYNTHASE JGI N/AIEA
PTHR10314:SF21Panther TRYPTOPHAN SYNTHASE BETA CHAIN JGI N/AIEA
PF00291PFAM Pyridoxal-phosphate dependent enzyme JGI N/AIEA
TRPSYN-PWYSoyCyc9 L-tryptophan biosynthesis Plant Metabolic Network ISS
GN7V-56753SoyCyc9-rxn indole-3-glycerol-phosphate lyase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g042400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g042400 not represented in the dataset
Glyma.19g042400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g042400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g05630 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g042400
>Glyma.19g042400.1 sequence-type=CDS polypeptide=Glyma.19g042400.1.p locus=Glyma.19g042400 ID=Glyma.19g042400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGCTAAAACTAGGCATAACCATATCAGAAGCTGTGGAGGTTGCTGCTAAAAATGCTTATAGCAAGTACTGCTTACACAATCATATTCTACTCCACCATAGTGTTATAGGAGAAGAATGGATCAAACAAATGGAAGCTATTGGGGAAACCCCAGATGTCATTAAAGGATGTACTGGTGGTGGCTCCAACTTCGCAGGGCTTAGTTTCCCGTTCCTTCGAGAGAAGCTCAATAAGAAAATCAATCCTGTTATAAGAGCAGTTGAACCTGCAGCATGTCCTTCATTAACAAAAGGGGTATATACTTATGATTATGGTGATACTGCAGGAATGACTCCATTGATAAAAATGCACACACTTGGACACGACTTTGTTCCGGATCCAATTCATGCTGGGGGTTTGCGTTACCACGGTATGGCACCATTGATCTCACATGTTTTTGACTTGGGTTTAATGGAAGCAATTGCAATTCCACAAACAGAATGCTTAGGGGCTATACAGTTTGCCAGGTCTGAAGGGTTGATACCAGCTTCTGAACCAACTCATGCCATAGCTGCAACCATTAGAGAAGCTATTCGATGTAGAGAAACCGGAGAGGCCAAGGTTATTCTGACAGCAATGTGTGGACATGGCCATTTTGATCTGCCAGCTTATGAAAAGTACTTGCAAGTGAAGAAGGATAATTTTGTGGGAAACGAAAATGCAAAACACAAAGGTTAG
Predicted protein sequences of Glyma.19g042400
>Glyma.19g042400.1.p sequence-type=predicted peptide transcript=Glyma.19g042400.1 locus=Glyma.19g042400 ID=Glyma.19g042400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLLKLGITISEAVEVAAKNAYSKYCLHNHILLHHSVIGEEWIKQMEAIGETPDVIKGCTGGGSNFAGLSFPFLREKLNKKINPVIRAVEPAACPSLTKGVYTYDYGDTAGMTPLIKMHTLGHDFVPDPIHAGGLRYHGMAPLISHVFDLGLMEAIAIPQTECLGAIQFARSEGLIPASEPTHAIAATIREAIRCRETGEAKVILTAMCGHGHFDLPAYEKYLQVKKDNFVGNENAKHKG*






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