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Report for Sequence Feature Glyma.19g033900

Feature Type:gene_model
Chromosome:Gm19
Start:4363981
stop:4367926
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g033900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G30180.1AT brassinosteroid-6-oxidase 2 JGI N/AIEA
GO:0007275GO-bp multicellular organism development EnsemblGenomesN/AIEA
GO:0010268GO-bp brassinosteroid homeostasis EnsemblGenomesN/AIEA
GO:0016125GO-bp sterol metabolic process EnsemblGenomesN/AIEA
GO:0016132GO-bp brassinosteroid biosynthetic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004497GO-mf monooxygenase activity EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding JGI N/AIEA
GO:0009055GO-mf electron carrier activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016705GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen EnsemblGenomesN/AIEA
GO:0016705GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen JGI N/AIEA
GO:0020037GO-mf heme binding EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG0157 KOG Cytochrome P450 CYP4/CYP19/CYP26 subfamilies JGI N/AIEA
PTHR24286Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24286:SF21Panther JGI N/AIEA
PF00067PFAM Cytochrome P450 JGI N/AIEA
PWY-6544SoyCyc9 superpathway of C28 brassinosteroid biosynthesis Plant Metabolic Network ISS
PWY-699SoyCyc9 brassinosteroid biosynthesis I Plant Metabolic Network ISS
GN7V-43117SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.19g033900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g033900
ParalogEvidenceComments
Glyma.13g052900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g033900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g04250 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g033900
>Glyma.19g033900.1 sequence-type=CDS polypeptide=Glyma.19g033900.1.p locus=Glyma.19g033900 ID=Glyma.19g033900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTCTTGATGGCAATTGTAGTAGTAGGTGTTGTCTTGGTGCTCTGTTTTTGCTCTGCTCTCTTGAGGTGGAATGAAGTAAGGTACAGGAAGAAAGGTTTGCCTCCTGGCACAATGGGTTGGCCACTTTTTGGGGAGACAACTGAGTTTCTTAAGCAGGGTCCAAACTTCATGAAAACCCAGAGAGCAAGGTATGGCAGTTTTTTCAAATCCCACATACTGGGTTGTCCTACCATTGTTTCCATGGATCCAGAGCTTAACAGATACATCCTAATGAATGAGGCAAAAGGGCTTGTTCCTGGTTACCCTCAATCCATGTTAGATATCTTAGGCAAATGCAACATTGCAGCTGTTCATGGCTCCACTCACAAGTACATGAGAGGAGCACTGCTTTCCATCATTAGCCCCACCTTGATCAGAGATCAGCTTTTGCCAAAAATTGATCAGTTCATGAGAGCCCACCTTAGCAACTGGGGTGACAAAGTCATCAACATTCAAGAGAAAACCAAAGAGATGGCCTTCTTATCATCTCTGAAGCAGATTGCTGGCATGGAATCTGGCTCATTATCTGACTCATTCATGGCAGAGTTCTTTAAGCTAGTTCTAGGAACCCTTTCTCTCCCTATTGATCTTCCTGGCACAAATTACCACAGTGGATTCCAGGCAAGGAAGACTATAGTGAACATTCTGAGTAAGCTCTTAGAGGAAAGAAGAGCATCACATGAAACCTACCATGACATGCTTGGTTGCTTGATGGGAAGAGATGAAAGTAGATACAAACTAAGTGATGAAGAAATCATTGATCTAGTGATTACAATCATGTATTCTGGCTATGAAACTGTTTCAACTACATCAATGATGGCAGTCAAGTACCTCCATGACCATCCCAAAGCTCTTGAGGAACTCAGAAAAGAACATTTGGCCATAAGAGAGAGGAAAAAGCCAGATGAACCACTTGACTGCAATGATCTCAAGTCAATGAGGTTCACTCGCGCGGTGATTTTTGAGACCTCTAGATTGGCCACAATAGTTAATGGGGTCCTAAGGAAAACCACTCAAGACATGGAACTAAACGGCTATTTGATCCCCAAAGGATGGAGAATATATGTGTATACAAGAGAGATCAATTATGACCCTTTTCTATATCCTGATCCACTAACATTCAACCCATGGAGATGGATGGACAAGAGTTTAGAATCAAAGAACTACTTCTTCATATTTGGAGGAGGCACCCGACAGTGTCCAGGAAAAGAGTTGGGAATAACCGAAATTTCCACTTTCTTACACTACTTTGTAACTAGATACAGGTGGGAAGAAGTAGGAGGAGATAAAGTAATGAAATTTCCTAGAGTTGAGGCACCTAATGGACTGCACATAAGGGTGACATCTTACTAA
Predicted protein sequences of Glyma.19g033900
>Glyma.19g033900.1.p sequence-type=predicted peptide transcript=Glyma.19g033900.1 locus=Glyma.19g033900 ID=Glyma.19g033900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAFLMAIVVVGVVLVLCFCSALLRWNEVRYRKKGLPPGTMGWPLFGETTEFLKQGPNFMKTQRARYGSFFKSHILGCPTIVSMDPELNRYILMNEAKGLVPGYPQSMLDILGKCNIAAVHGSTHKYMRGALLSIISPTLIRDQLLPKIDQFMRAHLSNWGDKVINIQEKTKEMAFLSSLKQIAGMESGSLSDSFMAEFFKLVLGTLSLPIDLPGTNYHSGFQARKTIVNILSKLLEERRASHETYHDMLGCLMGRDESRYKLSDEEIIDLVITIMYSGYETVSTTSMMAVKYLHDHPKALEELRKEHLAIRERKKPDEPLDCNDLKSMRFTRAVIFETSRLATIVNGVLRKTTQDMELNGYLIPKGWRIYVYTREINYDPFLYPDPLTFNPWRWMDKSLESKNYFFIFGGGTRQCPGKELGITEISTFLHYFVTRYRWEEVGGDKVMKFPRVEAPNGLHIRVTSY*






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