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Report for Sequence Feature Glyma.19g033800

Feature Type:gene_model
Chromosome:Gm19
Start:4352324
stop:4355794
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g033800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15650.1AT reversibly glycosylated polypeptide 2 JGI N/AIEA
GO:0009832GO-bp plant-type cell wall biogenesis EnsemblGenomesN/AIEA
GO:0030244GO-bp cellulose biosynthetic process EnsemblGenomesN/AIEA
GO:0030244GO-bp cellulose biosynthetic process JGI N/AIEA
GO:0033356GO-bp UDP-L-arabinose metabolic process EnsemblGenomesN/AIEA
GO:0071669GO-bp plant-type cell wall organization or biogenesis EnsemblGenomesN/AIEA
GO:0005794GO-cc Golgi apparatus EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0016866GO-mf intramolecular transferase activity EnsemblGenomesN/AIEA
GO:0016866GO-mf intramolecular transferase activity JGI N/AIEA
GO:0052691GO-mf UDP-arabinopyranose mutase activity EnsemblGenomesN/AIEA
PF03214PFAM Reversibly glycosylated polypeptide JGI N/AIEA
GN7V-57168SoyCyc9-rxn UDP-arabinopyranose mutase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g033800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g033800
ParalogEvidenceComments
Glyma.13g053000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g033800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g04240 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g033800
>Glyma.19g033800.1 sequence-type=CDS polypeptide=Glyma.19g033800.1.p locus=Glyma.19g033800 ID=Glyma.19g033800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGATGCTTCTGTGGCACCACCACCTCCACTGAAAGATGAGCTTGACATTGTGATTCCAACCATAAGGAACCTTGACTTTCTTGAGATGTGGAGGCCATTCTTTCAGCCTTACCATTTGATCATTGTTCAAGATGGTGACCCCACCAAAACCATCAAGGTTCCTCCTGGCTTTGACTATGAGCTCTACAACCGCAATGACATCAACAAGCTTTTGGGTCCAAGGGCCTCTTGCATCTCCTTCAAGGACTCCGCGTGCCGCTGTTTTGGCTACATGGTGTCCAAGAAGAAGTACATCTACACCATTGATGATGACTGCTTTGTTGCCAATGATCCATCAGGAAAAGCGATCAATGCACTTGAGCAGCATATTAAAAATCTTTTGTGTCCATCCACTCCCTTGTTCTTCAATACCCTTTATGACCCCTTCAGAGAAGGTGCAGATTATGTTCGTGGATACCCTTTCAGTCTTCGTGAAGGTGTGCCAACTGCTATTTCTCATGGACTTTGGCTCAACATCCCAGACTATGATGCTCCTACACAGCTTGTGAAGCCTCTTGAGAGGAACACTAGGTATGTGGATGCTGTTCTGAGCATACCAAAGGGCACTTTATTCCCCATGTGTGGAATGAACTTGGCATTCGATCGTGATCTCATTGGACCAGCCATGTACTTTGGTCTTATGGGAGATGGTCAACCAATCGGACGCTATGATGACATGTGGGCTGGATGGTGCTGCAAGGTGATCACTGATCATTTGGGGCTAGGAGTCAAGACTGGTCTGCCCTATATCTATCACAGCAAGGCCAGTAACCCATTTGTTAACCTCAGGAAAGAGTACAAAGGCATATTCTGGCAGGAAGACATTATTCCATTCTTCCAGAATGTTGTTCTTCCAAAAGAATGCACCACTGTTCAAAAGTGCTACATTGAGCTCTCCAAGCAAGTCAAGGAAAAGCTATCAAAGATAGATCCTTACTTCGACAAGCTCGCCGATGCCATGGTCACTTGGATTGAAGCTTGGGATGAGCTAAACCCTGAAGGAGCATCTAAGGCTAATGACAAAGCATAA
Predicted protein sequences of Glyma.19g033800
>Glyma.19g033800.1.p sequence-type=predicted peptide transcript=Glyma.19g033800.1 locus=Glyma.19g033800 ID=Glyma.19g033800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADASVAPPPPLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPTKTIKVPPGFDYELYNRNDINKLLGPRASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVANDPSGKAINALEQHIKNLLCPSTPLFFNTLYDPFREGADYVRGYPFSLREGVPTAISHGLWLNIPDYDAPTQLVKPLERNTRYVDAVLSIPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCCKVITDHLGLGVKTGLPYIYHSKASNPFVNLRKEYKGIFWQEDIIPFFQNVVLPKECTTVQKCYIELSKQVKEKLSKIDPYFDKLADAMVTWIEAWDELNPEGASKANDKA*






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