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Report for Sequence Feature Glyma.19g029400

Feature Type:gene_model
Chromosome:Gm19
Start:3658795
stop:3668005
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g029400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15550.1AT Transducin/WD40 repeat-like superfamily protein JGI N/AIEA
GO:0000460GO-bp maturation of 5.8S rRNA EnsemblGenomesN/AIEA
GO:0000463GO-bp maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) EnsemblGenomesN/AIEA
GO:0000466GO-bp maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) EnsemblGenomesN/AIEA
GO:0000470GO-bp maturation of LSU-rRNA EnsemblGenomesN/AIEA
GO:0006364GO-bp rRNA processing EnsemblGenomesN/AIEA
GO:0042254GO-bp ribosome biogenesis EnsemblGenomesN/AIEA
GO:0042273GO-bp ribosomal large subunit biogenesis EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005654GO-cc nucleoplasm EnsemblGenomesN/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
GO:0030687GO-cc preribosome, large subunit precursor EnsemblGenomesN/AIEA
GO:0070545GO-cc PeBoW complex EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0043021GO-mf ribonucleoprotein complex binding EnsemblGenomesN/AIEA
KOG0313 KOG Microtubule binding protein YTM1 (contains WD40 repeats) JGI N/AIEA
PTHR19855Panther WD40 REPEAT PROTEIN 12, 37 JGI N/AIEA
PF00400PFAM WD domain, G-beta repeat JGI N/AIEA
PF08154PFAM NLE (NUC135) domain JGI N/AIEA

Expression Patterns of Glyma.19g029400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g029400
ParalogEvidenceComments
Glyma.01g086000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Glyma.13g056900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g029400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g03590 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g029400
>Glyma.19g029400.1 sequence-type=CDS polypeptide=Glyma.19g029400.1.p locus=Glyma.19g029400 ID=Glyma.19g029400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACATGAACGAAGAGAGTGTTGAAGGAAGCGCGAGGAGGATCCAAGTGCGCTTCGTGACAAAGTTAGGCGAGCCGTACAAAGTTCCGACCACCGCCATCGCTATCCCCGCCGACCTCGCTCGATTCGGCCTCTCCTCACTCGTGAACGCACTCCTTCAATCCAATGACGCTGATCATCAGCTGGAGCCGTTTGATTTTTTGATCGATGGCGAGTTCGTTCGGATGTCGCTGGAGCAGTTTCTTTTGGCCAAGGGAATCTCTGCGGAAAGGATATTGGAAATTGAGTACACAAGGGCTGTGGCACCACGGAAGGAGGAGGACCCTTCTTTACATGATGATTGGGTCAGTGCTGTTGATGGTTCTTCTTCTCGGTTCTTTTTGACAGGATGTTATGATGGTTTAGGGAGGGTATGGAAAGGTGCTGGATTATGTACCCATATATTGGAGGGACATAGTGATGCTGTCACTTCTGTTAGTATCATCAACCCAAAAGGTGAGGAAACCATTACAGTAGCTACTGCTTCGAAAGACCGGACATTGAGGTTATGGAAGCTCAATGCAGAGGGTCCTGTAAATAATCCTATGAGGGTTAGGGCTTACAAAATCTTTCGTGGTCATAAATCTTCTGTAAATTGTGTTGCGGCGCAGACTTCTGGAGAGATGGTTTGTTCGGCTTCTTGGGATTGCACCATCAATCTATGGCAAACTAATGACTTTAATGCGGAAGATGACCTAGTGTCTAAAAAGAGAAAAATTGGAGCTCAAGTTGAGGAGTCCCAACTAGAGGGAGAGGCTTTTACTACCCTTGTTGGCCATACACAGTGTGTGTCTGCTGTGGTTTGGCCACAACAGGAGTCAATTTATTCTGCATCCTGGGATCATTCTATTAGGAAATGGGATGTTGAGACAGGAAAAAACTTGACAGATTTATTTTGTGGGAAGGTTCTCAACTGCCTTGATATTGGTGGGGAAGGTTCTGCTCTGATAGCTGCTGGGGGTTCTGACCCTGTCATTAGGATTTGGGATCCTCGTAAACCAGGCACTTCTGCTCCTGTTTTTCAGTTTTCTTCTCATACGTCTTGGATTTCGGCTTGCAAATGGCATGATCAGTCTTGGTTTCATTTACTTTCTGCATCCTATGATGGGAAAGTTATGTTGTGGGATCTGAGAACTGCGTGGCCTCTTTCAGTTATTGAATCGCACAGTGATAAGGTATTGTCTGCTGATTGGTGGAAAAGTAACAGTGTTATCAGTGGTGGAGCAGACTCAAAACTTTGCATTTCTTCAGAAATTCCTGTAAAATAG
Predicted protein sequences of Glyma.19g029400
>Glyma.19g029400.1.p sequence-type=predicted peptide transcript=Glyma.19g029400.1 locus=Glyma.19g029400 ID=Glyma.19g029400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNMNEESVEGSARRIQVRFVTKLGEPYKVPTTAIAIPADLARFGLSSLVNALLQSNDADHQLEPFDFLIDGEFVRMSLEQFLLAKGISAERILEIEYTRAVAPRKEEDPSLHDDWVSAVDGSSSRFFLTGCYDGLGRVWKGAGLCTHILEGHSDAVTSVSIINPKGEETITVATASKDRTLRLWKLNAEGPVNNPMRVRAYKIFRGHKSSVNCVAAQTSGEMVCSASWDCTINLWQTNDFNAEDDLVSKKRKIGAQVEESQLEGEAFTTLVGHTQCVSAVVWPQQESIYSASWDHSIRKWDVETGKNLTDLFCGKVLNCLDIGGEGSALIAAGGSDPVIRIWDPRKPGTSAPVFQFSSHTSWISACKWHDQSWFHLLSASYDGKVMLWDLRTAWPLSVIESHSDKVLSADWWKSNSVISGGADSKLCISSEIPVK*






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