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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G29320.1 | AT | Glycosyl transferase, family 35 | JGI | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | JGI | N/A | IEA |
| GO:0005980 | GO-bp | glycogen catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0004645 | GO-mf | phosphorylase activity | EnsemblGenomes | N/A | IEA |
| GO:0008184 | GO-mf | glycogen phosphorylase activity | EnsemblGenomes | N/A | IEA |
| GO:0008184 | GO-mf | glycogen phosphorylase activity | JGI | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016757 | GO-mf | transferase activity, transferring glycosyl groups | EnsemblGenomes | N/A | IEA |
| GO:0030170 | GO-mf | pyridoxal phosphate binding | EnsemblGenomes | N/A | IEA |
| GO:0102250 | GO-mf | linear malto-oligosaccharide phosphorylase activity | EnsemblGenomes | N/A | IEA |
| GO:0102499 | GO-mf | SHG alpha-glucan phosphorylase activity | EnsemblGenomes | N/A | IEA |
| KOG2099 | KOG | Glycogen phosphorylase | JGI | N/A | IEA |
| PTHR11468 | Panther | GLYCOGEN PHOSPHORYLASE | JGI | N/A | IEA |
| PF00343 | PFAM | Carbohydrate phosphorylase | JGI | N/A | IEA |
| GN7V-52278 | SoyCyc9-rxn | Enzyme name not determined | Plant Metabolic Network | ISS |
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Glyma.19g028400 not represented in the dataset |
Glyma.19g028400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.13g057800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g03490 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g028400.1 sequence-type=CDS polypeptide=Glyma.19g028400.1.p locus=Glyma.19g028400 ID=Glyma.19g028400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTCTTCTTCCACGACAATGCGGTTCTCCGCGGCCTCCACCGGCGCCGCGGCGGCGCTTCCTCGCCGGAGCTCCGTCGCCGGATTCATCGGCGTCGCGGCCAGATCCTCCGCCAAATCGAGGCTCCGCTTCATCGGAAGGAACGCGAACTTGAGCCTCCGGATGAGGAGGATGAGCTCTTTCTCCGTCGTGAAGTGCGTCTCCGGAAGCGAGGCCAAGGTGCAGGATACCGTGGCCAAACAACAAGAAGCTACAACCTCTCTCAGCTCCTTCACGCCAGATGCTTCATCTATTGCCTCAAGTATTAAATACCATGCAGAGTTCACTCCATTGTTTTCTCCAGAGAATTTTGATCTACCACAGGCTTTTCTTGCAACTGCACAAAGTGTTCGAGATTCTCTCATTATAAACTGGAATGCTACCTATGATTACTATGAGAAACTGAATGTTAAGCAGGCATATTACCTTTCGATGGAATTTTTGCAGGGTAGAGCATTATTAAATGCAATAGGCAATCTGGAGCTAACTGGTCCCTATGCTGAGGCTTTGAGCAAGCTCGGGCATAAATTAGAAAATGTGGCATACCAGGAGCCAGATGCTGCACTTGGAAATGGTGGTCTTGGGCGTCTTGCTTCATGTTTCTTGGACTCTTTGGCAACCTTGAACTATCCAGCTTGGGGTTATGGATTGAGATATAAGTATGGTTTATTTAAACAGCGAATAACCAAAGATGGGCAGGAGGAAGTTGCTGAAGATTGGCTTGAGATGGGCAATCCCTGGGAGATTATTAGAAATGATGTTTCATATCCTGTAAAGTTCTATGGCAAGGTTGTTTCAGGGTCAGATGGTAAAAAACATTGGATTGGAGGAGAAGATATAAAAGCTGTTGCACATGATGTTCCCATACCAGGATATAAAACTAAGACTACAATCAACTTGAGACTTTGGTCTACAAAAGCTGCATCAGAAGAATTTGATTTATCTGCTTTTAATGCTGGAAGGCACACTGAAGCATCTGAGGCTCTAGCAAATGCTGAAAAGATATGCTATATACTCTACCCTGGGGATGAACCAATAGAGGGCAAGATCCTTCGCCTCAAGCAACAATATACTTTATGTTCTGCTTCTCTTCAAGACATCATTGCTCGTTTTGAGAGAAGATCAGGAGCAAATGTTAATTGGGAAGAGTTTCCCGAGAAGGTTGCAGTGCAGATGAATGATACTCACCCAACGTTGTGCATCCCAGAGCTCATGAGAATTTTAATAGATGTAAAGGGCTTAAATTGGAAGGATGCTTGGAATATTACACAAAGGACTGTAGCATATACAAACCACACTGTTCTTCCAGAGGCATTAGAGAAATGGAGCTTGGATCTTATGCAGAAACTGCTTCCACGCCATATTGAGATAATAGAAATGATTGACGAGGAGCTGGTTCGGACCATAATTGCAGAATATGGCACAGAAAATTCAGACTTGCTGGAGAAAAAATTGAAGGAAATGAGAATACTAGAAAATGTCGAATTGACTGCAGAATTTGCAGATATACTGGTTAAGTCCAAAGAGGCCATTGATATTCCTAGTGAGGAGCTGCAAAGTTCTGAACAAGCAGAAGCAGAAGACGAAAAAGATGATGATGAAGTGGAAGCAGTTGCTAAAAAGAATGGAACAGATGAAAGTTCCATTGAGGATGAGAAAGAAGAGTTGCCTGAGCCAGTACCAGAACCACCAAAATTGGTTCGTATGGCAAATTTGTGTGTTGTGGGTGGTCATGCAGTGAATGGGGTTGCAGAGATACATAGTGAAATTGTAAAAGATGATGTTTTCAATGCATTTTATAAGTTGTGGCCCGAGAAGTTCCAAAACAAAACAAATGGTGTGACACCAAGGAGATGGATCAGGTTCTGCAATCCAGATCTGAGTAAAATAATAACCGAGTGGATAGGTACTGAGGATTGGGTCCTAAATACTGGAAAATTGGCCGAGCTACGGAAGTTTGTAGACAATGAGGATCTACAAGTGCAGTGGAGGGAAGCAAAGAGGAGTAACAAAGTTAAAGTTGCAGCATTCATCAGAGAAAAAACAGGGTATTCTGTCAGTCCTGATGCAATGTTTGACATCCAGGTGAAGAGAATCCATGAATATAAGCGACAATTAATGAACATATTTGGAATTGTTTACCGATACAAGAAGATGAAAGAAATGAGTGCGGCAGAAAGGGAAGCAAATTTTGTTCCTAGAGTTTGTATATTTGGGGGAAAAGCATTTGCTACATATGTGCAAGCCAAGAGAATTGTGAAATTTATTACAGATGTTGGGGCTACAGTAAATCATGACCCTGAAATAGGAGATCTACTTAAGGTTGTTTTTGTCCCTGATTATAATGTCAGTGTTGCCGAGATGCTTATTCCAGCAAGTGAATTGTCACAACATATCAGTACTGCTGGAATGGAGGCAAGTGGAACTAGCAATATGAAATTTGCAATGAATGGCTGCATATTGATTGGAACTTTAGATGGGGCCAATGTTGAAATAAGGGAAGAGGTTGGTGCAGACAACTTCTTCCTCTTTGGTGCCAAGGCTCATGAAATTGCTGGGCTGAGGAAAGAAAGAGCAGAGGGAAAGTTTGTGCCTGATCCACGATTTGAAGAAGTTAAAGAATTTGTCAGAAGTGGCATTTTTGGATCTTACAACTATGACGAATTGATGGGATCCTTAGAAGGAAATGAAGGTTTTGGTCGAGCAGATTATTTCCTTGTAGGGAAAGACTTTCCCAGCTACATAGAATGCCAAGAGAAGGTTGATGAAGCATACCGTGACCAAACTAAATGGACAAGAATGTCAATATTGAACACAGCAGGTTCATACAAGTTTAGCAGTGACCGCACGATTCATGAATATGCCCGAGAGATATGGAACATTGAACCAGTCCAATTGCCATAG
>Glyma.19g028400.1.p sequence-type=predicted peptide transcript=Glyma.19g028400.1 locus=Glyma.19g028400 ID=Glyma.19g028400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASSSTTMRFSAASTGAAAALPRRSSVAGFIGVAARSSAKSRLRFIGRNANLSLRMRRMSSFSVVKCVSGSEAKVQDTVAKQQEATTSLSSFTPDASSIASSIKYHAEFTPLFSPENFDLPQAFLATAQSVRDSLIINWNATYDYYEKLNVKQAYYLSMEFLQGRALLNAIGNLELTGPYAEALSKLGHKLENVAYQEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLEMGNPWEIIRNDVSYPVKFYGKVVSGSDGKKHWIGGEDIKAVAHDVPIPGYKTKTTINLRLWSTKAASEEFDLSAFNAGRHTEASEALANAEKICYILYPGDEPIEGKILRLKQQYTLCSASLQDIIARFERRSGANVNWEEFPEKVAVQMNDTHPTLCIPELMRILIDVKGLNWKDAWNITQRTVAYTNHTVLPEALEKWSLDLMQKLLPRHIEIIEMIDEELVRTIIAEYGTENSDLLEKKLKEMRILENVELTAEFADILVKSKEAIDIPSEELQSSEQAEAEDEKDDDEVEAVAKKNGTDESSIEDEKEELPEPVPEPPKLVRMANLCVVGGHAVNGVAEIHSEIVKDDVFNAFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSKIITEWIGTEDWVLNTGKLAELRKFVDNEDLQVQWREAKRSNKVKVAAFIREKTGYSVSPDAMFDIQVKRIHEYKRQLMNIFGIVYRYKKMKEMSAAEREANFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVVFVPDYNVSVAEMLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIREEVGADNFFLFGAKAHEIAGLRKERAEGKFVPDPRFEEVKEFVRSGIFGSYNYDELMGSLEGNEGFGRADYFLVGKDFPSYIECQEKVDEAYRDQTKWTRMSILNTAGSYKFSSDRTIHEYAREIWNIEPVQLP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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