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Report for Sequence Feature Glyma.19g020500

Feature Type:gene_model
Chromosome:Gm19
Start:2211514
stop:2216085
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g020500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G39890.1AT Protein of unknown function (DUF1637) JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0016702GO-mf oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen EnsemblGenomesN/AIEA
GO:0047800GO-mf cysteamine dioxygenase activity JGI N/AIEA
KOG4281 KOG Uncharacterized conserved protein JGI N/AIEA
PTHR22966Panther UNCHARACTERIZED JGI N/AIEA
PF07847PFAM Protein of unknown function (DUF1637) JGI N/AIEA
GN7V-44478SoyCyc9-rxn cysteamine dioxygenase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g020500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g020500
ParalogEvidenceComments
Glyma.13g064300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g020500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g02430 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g020500
>Glyma.19g020500.1 sequence-type=CDS polypeptide=Glyma.19g020500.1.p locus=Glyma.19g020500 ID=Glyma.19g020500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGATTGAGAGGACCTTGGCTGATAGAAAAGGAAGAGACTTTTGTGAATTGCCGAGAGAAACCATTGCCAGCAGCAACTCAAGGAGGAACCGGCGGCGACAGAGGAAGAAGCCGCCGGTTCAGAAGCTCTTCGAGACTTGCAAGGTTGTGTTTGCCTCTGCGGGGACAGGCTTTGTCCCTCCCCATGAGGACATTGACGAGTTGCAATCTGTTCTAGATGGAATAAAGCCAGAAGATGTTGGTTTGAGACCAGATATGCCGTATTTCAGGACAAGTGCCACACAGAGAGTGCCAAGAATCACGTACCTGCACATTTATGAGTGTGAAAAGTTCTCGATGGGGATATTTTGTTTGCCACCTTCTGGGGTCATCCCTCTTCACAATCACCCTGGAATGACGGTTTTCAGTAAGCTACTTTTTGGCACTATGCACATCAAGTCATATGATTGGGTCGTTGACTCGCCTCCTGAATCTCCTACAACTCTCAAACCATCAGAAAACCAAGGTCCTGAGATGAGGTTAGCCAAAGTTAAGGTTGATGCTGATTTCACTGCTCCTTGCAACCCTTCCATCCTTTATCCAGAAGATGGGGGCAACTTGCACTGTTTCACAGCAGTGACAGCATGCGCAGTTCTAGATGTGCTTGGTCCTCCATATTCTGATGCTGAAGGCAGACACTGCACATACTACCACGATTTCCCCTTTTCCAACTTTTCAGTGGATGGATTATCCATACCAGAAGAGGAAAAGAATGCTTATGAATGGCTACAAGAGAGGGATGAACTTGAAGACCTAGAAGTAAATGGAAAAATGTACAACGGTCCAAAGATTGTTGAGAGCTAA
Predicted protein sequences of Glyma.19g020500
>Glyma.19g020500.1.p sequence-type=predicted peptide transcript=Glyma.19g020500.1 locus=Glyma.19g020500 ID=Glyma.19g020500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGIERTLADRKGRDFCELPRETIASSNSRRNRRRQRKKPPVQKLFETCKVVFASAGTGFVPPHEDIDELQSVLDGIKPEDVGLRPDMPYFRTSATQRVPRITYLHIYECEKFSMGIFCLPPSGVIPLHNHPGMTVFSKLLFGTMHIKSYDWVVDSPPESPTTLKPSENQGPEMRLAKVKVDADFTAPCNPSILYPEDGGNLHCFTAVTACAVLDVLGPPYSDAEGRHCTYYHDFPFSNFSVDGLSIPEEEKNAYEWLQERDELEDLEVNGKMYNGPKIVES*






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