Report for Sequence Feature Glyma.19g020400
Feature Type: gene_model
Chromosome: Gm19
Start: 2170639
stop: 2177437
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.19g020400
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G25150.1 AT
TBP-associated factor 5
JGI N/A IEA
GO:0005515 GO-mf
protein binding
EnsemblGenomes N/A IEA
GO:0005515 GO-mf
protein binding
JGI N/A IEA
KOG0315
KOG
G-protein beta subunit-like protein (contains WD40 repeats)
JGI N/A IEA
PTHR22844 Panther
F-BOX AND WD40 DOMAIN PROTEIN
JGI N/A IEA
PF00400 PFAM
WD domain, G-beta repeat
JGI N/A IEA
Expression Patterns of Glyma.19g020400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.19g020400
Paralog Evidence Comments
Glyma.13g064500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.19g020400 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma19g02420 Wm82.a1.v1.1 IGC As supplied by JGI
Coding sequences of Glyma.19g020400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.19g020400.1 sequence-type=CDS polypeptide=Glyma.19g020400.1.p locus=Glyma.19g020400 ID=Glyma.19g020400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGTCCAAAGAGAACATCAGCACATTTTTTCCACTCGTTATGTTATCATAAAGCAAGAATCTCTTCTGAGGTTGTTTCCCCTTAATGAAATGACTTCAGTATTTCGAGGCGATACGCAAGGGGAGAAAAATGTTTTAGTTACCTCCAGCTGTGATCACTCCATTCGTCTTTGGTGGAAGGGTTCAAGCCTGCGGTGCTTTAGAGGTCACAATGGTCCTGTGTTGTCCCTATCAAATAAATTATTGGGAGAGGATGGCAGAAAAGTATTGGCAAGTGGGGGAGAAGATGGTACTGTTCGACTATGGTCCCTTGGCTCAAGTGGCAAACGAGGACAGCTTGCTTTGAAGGCTACACTCTATGGGCATGAAAAACCTGTAAATTTGATGTCAGTTGCTGGGCACAAAACTTCGCTTTTGGTATCCATCTCAAGAGATTCTAAGGTAAGTGTTTGGGATACTGGCGCTGCTACATCATCTGCTGTTCGTACCTCCTGTTGTGTTGGGATGGCTTCAGTTCCCGGTACACCCGTAAACATGAAATGCCATGAATCACTATTGTATGTGGCTGCTGGTTCCTCTGCCACTGCATTTGATTTAAGGACAATGCAGAAAGTTATCACCGCAGCTGTACATCAACCAAAGCTGTGTTCATTTGATGCCATCCCTTCAAAATATTTAATACGCACAGGCGGTGATGGCAGGGCAATGCTCTGGGATGTTAGGAGAAATCAAGAATCACTAAAACCAGAACCGATAGCCGAGTTGGATGGACATTGTGGCCAAGTAACTTTACTGCACATGGATCCATACAAAATAGTTACTGGGGGCCCTGACAATGCTTATGTGAATGTATGGGAAGTTGACACTGGTGTACAAACAAATTCCTTGCTTTGCTCTTTAACTGATGGTGCTGGATCTGGCTGTGATGCCATGGCTGTAGATGGGTGTAGAATTACTACAACTAGCTATTCTGAAGATTCGGGTGTTTTGTGCTTTAGGGACTACAACCATGATGCCACAAATCCTGTTACGAAACTAGAAAACGAACCGTCATCAAAATTTTGGATTTCTATGTCCGATGATGACAGTGATGACTGA
Predicted protein sequences of Glyma.19g020400
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.19g020400.1.p sequence-type=predicted peptide transcript=Glyma.19g020400.1 locus=Glyma.19g020400 ID=Glyma.19g020400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAVQREHQHIFSTRYVIIKQESLLRLFPLNEMTSVFRGDTQGEKNVLVTSSCDHSIRLWWKGSSLRCFRGHNGPVLSLSNKLLGEDGRKVLASGGEDGTVRLWSLGSSGKRGQLALKATLYGHEKPVNLMSVAGHKTSLLVSISRDSKVSVWDTGAATSSAVRTSCCVGMASVPGTPVNMKCHESLLYVAAGSSATAFDLRTMQKVITAAVHQPKLCSFDAIPSKYLIRTGGDGRAMLWDVRRNQESLKPEPIAELDGHCGQVTLLHMDPYKIVTGGPDNAYVNVWEVDTGVQTNSLLCSLTDGAGSGCDAMAVDGCRITTTSYSEDSGVLCFRDYNHDATNPVTKLENEPSSKFWISMSDDDSDD*