Glyma.19g020000

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Report for Sequence Feature Glyma.19g020000

Feature Type:	gene_model
Chromosome:	Gm19
Start:	2135278
stop:	2138545
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g020000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62740.1	AT	SPFH/Band 7/PHB domain-containing membrane-associated protein family	JGI	N/A	IEA
KOG2620	KOG	Prohibitins and stomatins of the PID superfamily	JGI	N/A	IEA
PTHR10264	Panther	BAND 7 PROTEIN-RELATED	JGI	N/A	IEA
PTHR10264:SF25	Panther	HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1-RELATED	JGI	N/A	IEA
PF01145	PFAM	SPFH domain / Band 7 family	JGI	N/A	IEA

Proteins Associated with Glyma.19g020000

Locus	Gene Symbol	Protein Name
	HIR1	hypersensitive-induced response protein 2-like

Expression Patterns of Glyma.19g020000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g020000

Paralog	Evidence	Comments
Glyma.13g065000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g020000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g02370	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g020000

Limit To All Plant Sequences

>Glyma.19g020000.2 sequence-type=transcript locus=Glyma.19g020000 ID=Glyma.19g020000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTAATTTTCTCTTTTTTAAAATAGATATACTATATTTTTTATAAAAAAAATCCCAACAATATATACAGCTTTGCACTTTGCATCTACTTGCTGTGAAGTGTGAATTAAAATATATTCAATTTTGCGTTTCTCTGCCTAAAAGGATTGAAAGATGGGTCAAGCATTCGGTTGCTACCAAGTCGATCAGTCAAATGTGGCTATCAAGGAGCATTTTGGAAAATTTGATGATGTCCTAGAGCCTGGATGTCACTGCCTGCCTTGGTGTCTTGGGTACCAGATTGCTGGTAGTCTGTCGCTGCGAGTGCAGCAACTTGATGTTCGATGTGAGACGAAAACCAAGGACAATGTCTTTGTCAATGTGGTTGCATCTGTGCAATACCGAGCTGTGTCTGAGAAAGCATCTGATGCATTCTATAGGCTTACCAACACTAGGGAGCAGATCCAATCATATGTTTTTGATGTCATCAGGGCCAGTGTACCAAAGTTGGAGTTGGATTCTGTCTTTGAGCAGAAAAATGATATAGCAAAGGCTGTGGAGGAGGAGCTTGAGAAGGCCATGTCAACCTATGGATTTGAGATAGTTCAGACTCTCATTGTTGATATAGAGCCTGATGTTAATGTCAAGAGAGCAATGAACGAGATAAACGCAGCTGCTAGATTGAGGTTGGCTGCAAATGAGAAGGCTGAAGCTGAGAAAATACTGCAGATCAAGAAAGCGGAGGGAGAAGCAGAATCCAAATATCTGTCAGGACTCGGTATCGCTCGTCAACGTCAGGCCATTGTGGATGGACTGAGGGACAGCGTGCTTGCTTTCTCTGAGAACGTGCCCGGGACATCAGCTAAAGATGTCATGGACATGGTGCTGGTGACTCAATACTTTGACACCATGAAAGAGATAGGAGCATCGTCAAGGTCCTCGTCTGTGTTCATACCTCACGGTCCTGGGGCAGTTAAAGACATTGCCGTGCAAATTCGGGATGGTCTCCTTCAGGCCACTGCCTCACAGAATTAAGCTTTCTTGGAGTTGTAAATAACAAATAGTATGTGTGTCAGGTTTTTTTCAGGAAATGCTTCTTTTGTTTGAACTTATAAAGTCTGCATCTTTACTCTTCTTATATTTGATAGATTCATAGCAGTGTCTATTTTATGTGTAAGTACTGATGTGCAGTTTTGAATACTTGTTTAAGGATAGTCTTAATGTCAAGTTGCTTGTGAATCATTAAGGAATTTGTTATGTAAGAATTACTTCCCAAAAGATGTGTTTTTCTTTTAGTGTCCTATCTTGCAAGTGGATGTGTAAATTTGTAGTTCTCTATATTTACTATTTGCTGCACAATGATTCTAC

>Glyma.19g020000.3 sequence-type=transcript locus=Glyma.19g020000 ID=Glyma.19g020000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAACTTCTTCTCTGCTTCTTCCGATTGAAAGATGGGTCAAGCATTCGGTTGCTACCAAGTCGATCAGTCAAATGTGGCTATCAAGGAGCATTTTGGAAAATTTGATGATGTCCTAGAGCCTGGATGTCACTGCCTGCCTTGGTGTCTTGGGTACCAGATTGCTGGTAGTCTGTCGCTGCGAGTGCAGCAACTTGATGTTCGATGTGAGACGAAAACCAAGGACAATGTCTTTGTCAATGTGGTTGCATCTGTGCAATACCGAGCTGTGTCTGAGAAAGCATCTGATGCATTCTATAGGCTTACCAACACTAGGGAGCAGATCCAATCATATGTTTTTGATGTCATCAGGGCCAGTGTACCAAAGTTGGAGTTGGATTCTGTCTTTGAGCAGAAAAATGATATAGCAAAGGCTGTGGAGGAGGAGCTTGAGAAGGCCATGTCAACCTATGGATTTGAGATAGTTCAGACTCTCATTGTTGATATAGAGCCTGATGTTAATGTCAAGAGAGCAATGAACGAGATAAACGCAGCTGCTAGATTGAGGTTGGCTGCAAATGAGAAGGCTGAAGCTGAGAAAATACTGCAGATCAAGAAAGCGGAGGGAGAAGCAGAATCCAAATATCTGTCAGGACTCGGTATCGCTCGTCAACGTCAGGCCATTGTGGATGGACTGAGGGACAGCGTGCTTGCTTTCTCTGAGAACGTGCCCGGGACATCAGCTAAAGATGTCATGGACATGGTGCTGGTGACTCAATACTTTGACACCATGAAAGAGATAGGAGCATCGTCAAGGTCCTCGTCTGTGTTCATACCTCACGGTCCTGGGGCAGTTAAAGACATTGCCGTGCAAATTCGGGATGGTCTCCTTCAGGCCACTGCCTCACAGAATTAAGCTTTCTTGGAGTTGTAAATAACAAATAGTATGTGTGTCAGGTTTTTTTCAGGAAATGCTTCTTTTGTTTGAACTTATAAAGTCTGCATCTTTACTCTTCTTATATTTGATAGATTCATAGCAGTGTCTATTTTATGTGTAAGTACTGATGTGCAGTTTTGAATACTTGTTTAAGGATAGTCTTAATGTCAAGTTGCTTGTGAATCATTAAGGAATTTGTTATGTAAGAATTACTTCCCAAAAGATGTGTTTTTCTTTTAGTGTCCTATCTTGCAAGTGGATGTGTAAATTTGTAGTTCTCTATATTTACTATTTGCTGCACAATGATTCTAC

>Glyma.19g020000.4 sequence-type=transcript locus=Glyma.19g020000 ID=Glyma.19g020000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCGCGTTATGATTTGAATTTTGTACTTTCAATCTTTTTTGTGGATGGGGTTGTTTTCATTTTTGTGTTTTGCTTTCTGGGATCAGCTCAAAATTTTCATTTTTTTTTTTTTGTGGGGGGTTTGATTTTTCTTTGCAGTTTTTTATAATTTGGGGAACTTTTAGGTTTCTTGGATCCGAAGTTTTGGTTGATAATTCCGGTTTCACTGTTTCTGACTTTTAGGGTTCCGTTTTAGTTTTTCTGGAATCTCGATGCTTTTCTTTTCCTGCATAATTCTTAGGAAAACAAAAGGAGAATGTAGAATTTCTAATTCAAATGAGTATTTGTGAAAAGTTGAAAACTGAGTTTTTGTTCTTGGATTGGATTGAAAGATGGGTCAAGCATTCGGTTGCTACCAAGTCGATCAGTCAAATGTGGCTATCAAGGAGCATTTTGGAAAATTTGATGATGTCCTAGAGCCTGGATGTCACTGCCTGCCTTGGTGTCTTGGGTACCAGATTGCTGGTAGTCTGTCGCTGCGAGTGCAGCAACTTGATGTTCGATGTGAGACGAAAACCAAGGACAATGTCTTTGTCAATGTGGTTGCATCTGTGCAATACCGAGCTGTGTCTGAGAAAGCATCTGATGCATTCTATAGGCTTACCAACACTAGGGAGCAGATCCAATCATATGTTTTTGATGTCATCAGGGCCAGTGTACCAAAGTTGGAGTTGGATTCTGTCTTTGAGCAGAAAAATGATATAGCAAAGGCTGTGGAGGAGGAGCTTGAGAAGGCCATGTCAACCTATGGATTTGAGATAGTTCAGACTCTCATTGTTGATATAGAGCCTGATGTTAATGTCAAGAGAGCAATGAACGAGATAAACGCAGCTGCTAGATTGAGGTTGGCTGCAAATGAGAAGGCTGAAGCTGAGAAAATACTGCAGATCAAGAAAGCGGAGGGAGAAGCAGAATCCAAATATCTGTCAGGACTCGGTATCGCTCGTCAACGTCAGGCCATTGTGGATGGACTGAGGGACAGCGTGCTTGCTTTCTCTGAGAACGTGCCCGGGACATCAGCTAAAGATGTCATGGACATGGTGCTGGTGACTCAATACTTTGACACCATGAAAGAGATAGGAGCATCGTCAAGGTCCTCGTCTGTGTTCATACCTCACGGTCCTGGGGCAGTTAAAGACATTGCCGTGCAAATTCGGGATGGTCTCCTTCAGGCCACTGCCTCACAGAATTAAGCTTTCTTGGAGTTGTAAATAACAAATAGTATGTGTGTCAGGTTTTTTTCAGGAAATGCTTCTTTTGTTTGAACTTATAAAGTCTGCATCTTTACTCTTCTTATATTTGATAGATTCATAGCAGTGTCTATTTTATGTGTAAGTACTGATGTGCAGTTTTGAATACTTGTTTAAGGATAGTCTTAATGTCAAGTTGCTTGTGAATCATTAAGGAATTTGTTATGTAAGAATTACTTCCCAAAAGATGTGTTTTTCTTTTAGTGTCCTATCTTGCAAGTGGATGTGTAAATTTGTAGTTCTCTATATTTACTATTTGCTGCACAATGATTCTAC

Coding sequences of Glyma.19g020000

Limit To All Plant Sequences

>Glyma.19g020000.1 sequence-type=CDS polypeptide=Glyma.19g020000.1.p locus=Glyma.19g020000 ID=Glyma.19g020000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTCAAGCATTCGGTTGCTACCAAGTCGATCAGTCAAATGTGGCTATCAAGGAGCATTTTGGAAAATTTGATGATGTCCTAGAGCCTGGATGTCACTGCCTGCCTTGGTGTCTTGGGTACCAGATTGCTGGTAGTCTGTCGCTGCGAGTGCAGCAACTTGATGTTCGATGTGAGACGAAAACCAAGGACAATGTCTTTGTCAATGTGGTTGCATCTGTGCAATACCGAGCTGTGTCTGAGAAAGCATCTGATGCATTCTATAGGCTTACCAACACTAGGGAGCAGATCCAATCATATGTTTTTGATGTCATCAGGGCCAGTGTACCAAAGTTGGAGTTGGATTCTGTCTTTGAGCAGAAAAATGATATAGCAAAGGCTGTGGAGGAGGAGCTTGAGAAGGCCATGTCAACCTATGGATTTGAGATAGTTCAGACTCTCATTGTTGATATAGAGCCTGATGTTAATGTCAAGAGAGCAATGAACGAGATAAACGCAGCTGCTAGATTGAGGTTGGCTGCAAATGAGAAGGCTGAAGCTGAGAAAATACTGCAGATCAAGAAAGCGGAGGGAGAAGCAGAATCCAAATATCTGTCAGGACTCGGTATCGCTCGTCAACGTCAGGCCATTGTGGATGGACTGAGGGACAGCGTGCTTGCTTTCTCTGAGAACGTGCCCGGGACATCAGCTAAAGATGTCATGGACATGGTGCTGGTGACTCAATACTTTGACACCATGAAAGAGATAGGAGCATCGTCAAGGTCCTCGTCTGTGTTCATACCTCACGGTCCTGGGGCAGTTAAAGACATTGCCGTGCAAATTCGGGATGGTCTCCTTCAGGCCACTGCCTCACAGAATTAA

>Glyma.19g020000.2 sequence-type=CDS polypeptide=Glyma.19g020000.2.p locus=Glyma.19g020000 ID=Glyma.19g020000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTCAAGCATTCGGTTGCTACCAAGTCGATCAGTCAAATGTGGCTATCAAGGAGCATTTTGGAAAATTTGATGATGTCCTAGAGCCTGGATGTCACTGCCTGCCTTGGTGTCTTGGGTACCAGATTGCTGGTAGTCTGTCGCTGCGAGTGCAGCAACTTGATGTTCGATGTGAGACGAAAACCAAGGACAATGTCTTTGTCAATGTGGTTGCATCTGTGCAATACCGAGCTGTGTCTGAGAAAGCATCTGATGCATTCTATAGGCTTACCAACACTAGGGAGCAGATCCAATCATATGTTTTTGATGTCATCAGGGCCAGTGTACCAAAGTTGGAGTTGGATTCTGTCTTTGAGCAGAAAAATGATATAGCAAAGGCTGTGGAGGAGGAGCTTGAGAAGGCCATGTCAACCTATGGATTTGAGATAGTTCAGACTCTCATTGTTGATATAGAGCCTGATGTTAATGTCAAGAGAGCAATGAACGAGATAAACGCAGCTGCTAGATTGAGGTTGGCTGCAAATGAGAAGGCTGAAGCTGAGAAAATACTGCAGATCAAGAAAGCGGAGGGAGAAGCAGAATCCAAATATCTGTCAGGACTCGGTATCGCTCGTCAACGTCAGGCCATTGTGGATGGACTGAGGGACAGCGTGCTTGCTTTCTCTGAGAACGTGCCCGGGACATCAGCTAAAGATGTCATGGACATGGTGCTGGTGACTCAATACTTTGACACCATGAAAGAGATAGGAGCATCGTCAAGGTCCTCGTCTGTGTTCATACCTCACGGTCCTGGGGCAGTTAAAGACATTGCCGTGCAAATTCGGGATGGTCTCCTTCAGGCCACTGCCTCACAGAATTAA

>Glyma.19g020000.3 sequence-type=CDS polypeptide=Glyma.19g020000.3.p locus=Glyma.19g020000 ID=Glyma.19g020000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTCAAGCATTCGGTTGCTACCAAGTCGATCAGTCAAATGTGGCTATCAAGGAGCATTTTGGAAAATTTGATGATGTCCTAGAGCCTGGATGTCACTGCCTGCCTTGGTGTCTTGGGTACCAGATTGCTGGTAGTCTGTCGCTGCGAGTGCAGCAACTTGATGTTCGATGTGAGACGAAAACCAAGGACAATGTCTTTGTCAATGTGGTTGCATCTGTGCAATACCGAGCTGTGTCTGAGAAAGCATCTGATGCATTCTATAGGCTTACCAACACTAGGGAGCAGATCCAATCATATGTTTTTGATGTCATCAGGGCCAGTGTACCAAAGTTGGAGTTGGATTCTGTCTTTGAGCAGAAAAATGATATAGCAAAGGCTGTGGAGGAGGAGCTTGAGAAGGCCATGTCAACCTATGGATTTGAGATAGTTCAGACTCTCATTGTTGATATAGAGCCTGATGTTAATGTCAAGAGAGCAATGAACGAGATAAACGCAGCTGCTAGATTGAGGTTGGCTGCAAATGAGAAGGCTGAAGCTGAGAAAATACTGCAGATCAAGAAAGCGGAGGGAGAAGCAGAATCCAAATATCTGTCAGGACTCGGTATCGCTCGTCAACGTCAGGCCATTGTGGATGGACTGAGGGACAGCGTGCTTGCTTTCTCTGAGAACGTGCCCGGGACATCAGCTAAAGATGTCATGGACATGGTGCTGGTGACTCAATACTTTGACACCATGAAAGAGATAGGAGCATCGTCAAGGTCCTCGTCTGTGTTCATACCTCACGGTCCTGGGGCAGTTAAAGACATTGCCGTGCAAATTCGGGATGGTCTCCTTCAGGCCACTGCCTCACAGAATTAA

>Glyma.19g020000.4 sequence-type=CDS polypeptide=Glyma.19g020000.4.p locus=Glyma.19g020000 ID=Glyma.19g020000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTCAAGCATTCGGTTGCTACCAAGTCGATCAGTCAAATGTGGCTATCAAGGAGCATTTTGGAAAATTTGATGATGTCCTAGAGCCTGGATGTCACTGCCTGCCTTGGTGTCTTGGGTACCAGATTGCTGGTAGTCTGTCGCTGCGAGTGCAGCAACTTGATGTTCGATGTGAGACGAAAACCAAGGACAATGTCTTTGTCAATGTGGTTGCATCTGTGCAATACCGAGCTGTGTCTGAGAAAGCATCTGATGCATTCTATAGGCTTACCAACACTAGGGAGCAGATCCAATCATATGTTTTTGATGTCATCAGGGCCAGTGTACCAAAGTTGGAGTTGGATTCTGTCTTTGAGCAGAAAAATGATATAGCAAAGGCTGTGGAGGAGGAGCTTGAGAAGGCCATGTCAACCTATGGATTTGAGATAGTTCAGACTCTCATTGTTGATATAGAGCCTGATGTTAATGTCAAGAGAGCAATGAACGAGATAAACGCAGCTGCTAGATTGAGGTTGGCTGCAAATGAGAAGGCTGAAGCTGAGAAAATACTGCAGATCAAGAAAGCGGAGGGAGAAGCAGAATCCAAATATCTGTCAGGACTCGGTATCGCTCGTCAACGTCAGGCCATTGTGGATGGACTGAGGGACAGCGTGCTTGCTTTCTCTGAGAACGTGCCCGGGACATCAGCTAAAGATGTCATGGACATGGTGCTGGTGACTCAATACTTTGACACCATGAAAGAGATAGGAGCATCGTCAAGGTCCTCGTCTGTGTTCATACCTCACGGTCCTGGGGCAGTTAAAGACATTGCCGTGCAAATTCGGGATGGTCTCCTTCAGGCCACTGCCTCACAGAATTAA

Predicted protein sequences of Glyma.19g020000

Limit To All Plant Sequences

>Glyma.19g020000.1.p sequence-type=predicted peptide transcript=Glyma.19g020000.1 locus=Glyma.19g020000 ID=Glyma.19g020000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGQAFGCYQVDQSNVAIKEHFGKFDDVLEPGCHCLPWCLGYQIAGSLSLRVQQLDVRCETKTKDNVFVNVVASVQYRAVSEKASDAFYRLTNTREQIQSYVFDVIRASVPKLELDSVFEQKNDIAKAVEEELEKAMSTYGFEIVQTLIVDIEPDVNVKRAMNEINAAARLRLAANEKAEAEKILQIKKAEGEAESKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTSAKDVMDMVLVTQYFDTMKEIGASSRSSSVFIPHGPGAVKDIAVQIRDGLLQATASQN*

>Glyma.19g020000.2.p sequence-type=predicted peptide transcript=Glyma.19g020000.2 locus=Glyma.19g020000 ID=Glyma.19g020000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGQAFGCYQVDQSNVAIKEHFGKFDDVLEPGCHCLPWCLGYQIAGSLSLRVQQLDVRCETKTKDNVFVNVVASVQYRAVSEKASDAFYRLTNTREQIQSYVFDVIRASVPKLELDSVFEQKNDIAKAVEEELEKAMSTYGFEIVQTLIVDIEPDVNVKRAMNEINAAARLRLAANEKAEAEKILQIKKAEGEAESKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTSAKDVMDMVLVTQYFDTMKEIGASSRSSSVFIPHGPGAVKDIAVQIRDGLLQATASQN*

>Glyma.19g020000.3.p sequence-type=predicted peptide transcript=Glyma.19g020000.3 locus=Glyma.19g020000 ID=Glyma.19g020000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGQAFGCYQVDQSNVAIKEHFGKFDDVLEPGCHCLPWCLGYQIAGSLSLRVQQLDVRCETKTKDNVFVNVVASVQYRAVSEKASDAFYRLTNTREQIQSYVFDVIRASVPKLELDSVFEQKNDIAKAVEEELEKAMSTYGFEIVQTLIVDIEPDVNVKRAMNEINAAARLRLAANEKAEAEKILQIKKAEGEAESKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTSAKDVMDMVLVTQYFDTMKEIGASSRSSSVFIPHGPGAVKDIAVQIRDGLLQATASQN*

>Glyma.19g020000.4.p sequence-type=predicted peptide transcript=Glyma.19g020000.4 locus=Glyma.19g020000 ID=Glyma.19g020000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGQAFGCYQVDQSNVAIKEHFGKFDDVLEPGCHCLPWCLGYQIAGSLSLRVQQLDVRCETKTKDNVFVNVVASVQYRAVSEKASDAFYRLTNTREQIQSYVFDVIRASVPKLELDSVFEQKNDIAKAVEEELEKAMSTYGFEIVQTLIVDIEPDVNVKRAMNEINAAARLRLAANEKAEAEKILQIKKAEGEAESKYLSGLGIARQRQAIVDGLRDSVLAFSENVPGTSAKDVMDMVLVTQYFDTMKEIGASSRSSSVFIPHGPGAVKDIAVQIRDGLLQATASQN*

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