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Report for Sequence Feature Glyma.19g018000

Feature Type:gene_model
Chromosome:Gm19
Start:1852748
stop:1854291
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g018000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G76120.1AT Pseudouridine synthase family protein JGI N/AIEA
GO:0001522GO-bp pseudouridine synthesis EnsemblGenomesN/AIEA
GO:0001522GO-bp pseudouridine synthesis JGI N/AIEA
GO:0009451GO-bp RNA modification EnsemblGenomesN/AIEA
GO:0009451GO-bp RNA modification JGI N/AIEA
GO:0031119GO-bp tRNA pseudouridine synthesis EnsemblGenomesN/AIEA
GO:1990481GO-bp mRNA pseudouridine synthesis EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0009982GO-mf pseudouridine synthase activity EnsemblGenomesN/AIEA
GO:0009982GO-mf pseudouridine synthase activity JGI N/AIEA
PTHR11142Panther PSEUDOURIDYLATE SYNTHASE JGI N/AIEA
PF01416PFAM tRNA pseudouridine synthase JGI N/AIEA

Expression Patterns of Glyma.19g018000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g018000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g02100 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g018000
>Glyma.19g018000.1 sequence-type=CDS polypeptide=Glyma.19g018000.1.p locus=Glyma.19g018000 ID=Glyma.19g018000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAAACTCAGATACGAAGCTGACAACTTCATCCCTGCCTCCACCACCTCCAGTATCTGCGGAGGAGCCAGAGCCCAAGAAGTTGAAGATGTCCACCACAACTTCTGATGATGAAGAATGTGCAGCTGGCACAGGCACCAAGAAAAGATACAAGCGCCGTAAGGTTGCTATTTTCTTTGCTTACTGTGGTGTTGGTTATCAGGGTATGCAGAAAAACCCTGGTGCAAAGACTATTGAAGGTGACCTAGAAGAAGTCTTGTATGTGTCTGGAGCTGTCCCTGAACAGGATCGTGGAGTCCCTAAACGATATGACTGGGCTCGCTCAGCTAGAACTGATAAAGGAGTTAGTGCTGTTGGTCAGGTTGTCTCAGGCCGGTTCTATATTGATCCACCTGGCCTTGTTGACCGCCTTAATTCAAACCTTCCTTCTCAGATAAGGATCTTTGGTTACAAACGTGTGACAGCTTCTTTTAATGCCAAGAAGTTTTGCGACCGGAGGAGGTATGTCTACCTCATTCCTGTGTTTGCTCTTGATCCTAGCTGTCATCGTGATAGAGAGACCGTCATGGCTAGTTTGGGATCTGGAAATGAGCTTGTTAAGTGTTTGGAGTGTTCTGAGAGGGGCCGAAAGGTGATAGGATTAGTTGGTAATCGTAAGAAGAATCTGGAACTAGAAGCTGTGGATGTCGAGGCTGGTATTTCATCAAACAGAGACTCTGGAGTTACAGAGGATGTGGAGGTTTCTTTGAGCAAAGGTGATGATAATCATTTAAATGAGGAATATGGGAATGATAATAAGGACATTCTTGAGGATGAAAAAGTTAATGGTGAGGATAAGCTAACCAATGGAAAACAGAAGGAAGGAACTGTCGCTCTTTGGTTGCATTCTTTGAACCATAGAAATTATCCAGATCTGCATGTTATCAATGAGGAAGCCATCCCCGATAACAAGAGTGCTGATCCCAAAGAAGCCATCACTGATAACAAGAGTGCTGATCCCAAAGATGCCATCACCGATAACAAGGGTGCTGATCTCGAAGAACACATCACCGATAACAATCCTGTAGTTGTGACTCAGTGA
Predicted protein sequences of Glyma.19g018000
>Glyma.19g018000.1.p sequence-type=predicted peptide transcript=Glyma.19g018000.1 locus=Glyma.19g018000 ID=Glyma.19g018000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MENSDTKLTTSSLPPPPPVSAEEPEPKKLKMSTTTSDDEECAAGTGTKKRYKRRKVAIFFAYCGVGYQGMQKNPGAKTIEGDLEEVLYVSGAVPEQDRGVPKRYDWARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNSNLPSQIRIFGYKRVTASFNAKKFCDRRRYVYLIPVFALDPSCHRDRETVMASLGSGNELVKCLECSERGRKVIGLVGNRKKNLELEAVDVEAGISSNRDSGVTEDVEVSLSKGDDNHLNEEYGNDNKDILEDEKVNGEDKLTNGKQKEGTVALWLHSLNHRNYPDLHVINEEAIPDNKSADPKEAITDNKSADPKDAITDNKGADLEEHITDNNPVVVTQ*






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