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Report for Sequence Feature Glyma.19g013800

Feature Type:gene_model
Chromosome:Gm19
Start:1293458
stop:1297881
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g013800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G04700.1AT ferredoxin thioredoxin reductase catalytic beta chain family protein JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0008937GO-mf ferredoxin-NAD(P) reductase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016730GO-mf oxidoreductase activity, acting on iron-sulfur proteins as donors EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0051536GO-mf iron-sulfur cluster binding EnsemblGenomesN/AIEA
GO:0051539GO-mf 4 iron, 4 sulfur cluster binding EnsemblGenomesN/AIEA
GO:0103012GO-mf ferredoxin-thioredoxin reductase activity EnsemblGenomesN/AIEA
PF02943PFAM Ferredoxin thioredoxin reductase catalytic beta chain JGI N/AIEA
GN7V-52955SoyCyc9-rxn ferredoxin:thioredoxin reductase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g013800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g013800
ParalogEvidenceComments
Glyma.13g069100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g013800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g01650 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g013800
>Glyma.19g013800.2 sequence-type=transcript locus=Glyma.19g013800 ID=Glyma.19g013800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAGAGCACACAAGTGTTGTTTTGTTTCGGTCTTTCTTTCTCACACAATCTGGGAACAACACACACAAACCATTCCCTTTTCTCGCTCCGGCAATGACCACCCAAGCTTCCACCTTCGCCGTCGCCGTTCCCTCCGTCACAACCCCCTTCCGCAGCCACCGGAATCCCTTCGTTGTTCGAGCCCAAGATAAATCCGTTGAAATTATGAGGAAATTCTCAGAGCAATATGCTCGTAAATCAGGAACATACTTTTGTGTTGACAAAGGAGTCACTTCTGTTGTTATCAAGGGGTTGGCTGACCATAAAGATACGTTGGGTGCACCACTGTGCCCTTGCCGGCATTATGATGATAAAGCTGCTGAGGTTGCACAAGGATTTTGGAATTGCCCTTGTGTTCCCATGAGAGAGAGGAAGGAATGCCACTGCATGCTATTTCTCACTCCTGATAATGATTTTGCTGGCAATGAACAGACTATCACCTTGGATGAAATTAAAGAATCAACAGCCAACATGTAACAGATTATTGTGTATTGAGTTACTGTTAAATTTTTACGGGCTGTATGCTTTGAAAGACAAGTGAAAAGAAAGGTGTAACGATATGTAGGTAATATATTTGTATTTACCGAAAATCAGATGTAATTTTTCTAACTGCATTTCTATCTTACTCTGTATCACAAATCTCATTCACCTCTTCATTTCATTTTTTGGCTGCGGGTGCAAAAAACACAGTCTTTTTAGTTTCATATCTTCACCATCA
Coding sequences of Glyma.19g013800
>Glyma.19g013800.1 sequence-type=CDS polypeptide=Glyma.19g013800.1.p locus=Glyma.19g013800 ID=Glyma.19g013800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCACCCAAGCTTCCACCTTCGCCGTCGCCGTTCCCTCCGTCACAACCCCCTTCCGCAGCCACCGGAATCCCTTCGTTGTTCGAGCCCAAGCGGAACCTTCAGATAAATCCGTTGAAATTATGAGGAAATTCTCAGAGCAATATGCTCGTAAATCAGGAACATACTTTTGTGTTGACAAAGGAGTCACTTCTGTTGTTATCAAGGGGTTGGCTGACCATAAAGATACGTTGGGTGCACCACTGTGCCCTTGCCGGCATTATGATGATAAAGCTGCTGAGGTTGCACAAGGATTTTGGAATTGCCCTTGTGTTCCCATGAGAGAGAGGAAGGAATGCCACTGCATGCTATTTCTCACTCCTGATAATGATTTTGCTGGCAATGAACAGACTATCACCTTGGATGAAATTAAAGAATCAACAGCCAACATGTAA

>Glyma.19g013800.2 sequence-type=CDS polypeptide=Glyma.19g013800.2.p locus=Glyma.19g013800 ID=Glyma.19g013800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCACCCAAGCTTCCACCTTCGCCGTCGCCGTTCCCTCCGTCACAACCCCCTTCCGCAGCCACCGGAATCCCTTCGTTGTTCGAGCCCAAGATAAATCCGTTGAAATTATGAGGAAATTCTCAGAGCAATATGCTCGTAAATCAGGAACATACTTTTGTGTTGACAAAGGAGTCACTTCTGTTGTTATCAAGGGGTTGGCTGACCATAAAGATACGTTGGGTGCACCACTGTGCCCTTGCCGGCATTATGATGATAAAGCTGCTGAGGTTGCACAAGGATTTTGGAATTGCCCTTGTGTTCCCATGAGAGAGAGGAAGGAATGCCACTGCATGCTATTTCTCACTCCTGATAATGATTTTGCTGGCAATGAACAGACTATCACCTTGGATGAAATTAAAGAATCAACAGCCAACATGTAA
Predicted protein sequences of Glyma.19g013800
>Glyma.19g013800.1.p sequence-type=predicted peptide transcript=Glyma.19g013800.1 locus=Glyma.19g013800 ID=Glyma.19g013800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTQASTFAVAVPSVTTPFRSHRNPFVVRAQAEPSDKSVEIMRKFSEQYARKSGTYFCVDKGVTSVVIKGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGNEQTITLDEIKESTANM*

>Glyma.19g013800.2.p sequence-type=predicted peptide transcript=Glyma.19g013800.2 locus=Glyma.19g013800 ID=Glyma.19g013800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTQASTFAVAVPSVTTPFRSHRNPFVVRAQDKSVEIMRKFSEQYARKSGTYFCVDKGVTSVVIKGLADHKDTLGAPLCPCRHYDDKAAEVAQGFWNCPCVPMRERKECHCMLFLTPDNDFAGNEQTITLDEIKESTANM*






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