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Report for Sequence Feature Glyma.19g011400

Feature Type:gene_model
Chromosome:Gm19
Start:1099629
stop:1100814
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g011400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G10250.1AT HSP20-like chaperones superfamily protein JGI N/AIEA
KOG0710 KOG Molecular chaperone (small heat-shock protein Hsp26/Hsp42) JGI N/AIEA
PTHR11527Panther SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY JGI N/AIEA
PTHR11527:SF14Panther JGI N/AIEA
PF00011PFAM Hsp20/alpha crystallin family JGI N/AIEA

Proteins Associated with Glyma.19g011400
LocusGene SymbolProtein Name
HSP22.3 low molecular weight heat shock protein Hsp22.3

Expression Patterns of Glyma.19g011400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g011400
ParalogEvidenceComments
Glyma.13g071400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g011400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g01440 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g011400
>Glyma.19g011400.1 sequence-type=CDS polypeptide=Glyma.19g011400.1.p locus=Glyma.19g011400 ID=Glyma.19g011400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCGCACAATTACAATTGCAGCAATGTGTCTTCTTCTCTCATTAGTGTCCCTCTGTGTCACCACCAACGCATTAATGCCATACACACGTAGCACCCTCTGGGACATGATGCTCCAATCCGAGGACCCATTTGGAATCTTGGAACAGAACCCATTCAACAACATACCCAACATCAGAGGAGGAGCCGAGACTCTCGCCCTGGCACGTGCGGATTGGAAGGAAACCCCCAGCGCGCACGTGATAGTGCTGGACCTACCCGGGATGAAAAAGAAGGACGTGAAGATCGAGGTGGAGGAGAGTCGCGTGTTACGTATCAGCGGCGAGAGGAAGGGAGAGGAAGAAGAAGAAGAAGAAGAGGTTGAGGGCGAGAAGTGGCATAGGGCTGAAAGGACTAACGGGAAGTTCATGAGACAGTTCCGGTTGCCGGTGAATGCGGACTTGGAGAAGGTTACGGCGAGGCTTGAAAATGGGGTGCTGAGGATCACGGTGGGCAAGTTTGGTGAGGACAAGAAGAGGCAGCCTAAGGTTATTGACATTGCTCAGAGGGATTCTGCTGCTGAGAATGTGAAGCCCACCAAGCCTCAAATGTAA
Predicted protein sequences of Glyma.19g011400
>Glyma.19g011400.1.p sequence-type=predicted peptide transcript=Glyma.19g011400.1 locus=Glyma.19g011400 ID=Glyma.19g011400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARTITIAAMCLLLSLVSLCVTTNALMPYTRSTLWDMMLQSEDPFGILEQNPFNNIPNIRGGAETLALARADWKETPSAHVIVLDLPGMKKKDVKIEVEESRVLRISGERKGEEEEEEEEVEGEKWHRAERTNGKFMRQFRLPVNADLEKVTARLENGVLRITVGKFGEDKKRQPKVIDIAQRDSAAENVKPTKPQM*






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