Glyma.19g009900

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Report for Sequence Feature Glyma.19g009900

Feature Type:	gene_model
Chromosome:	Gm19
Start:	923053
stop:	937826
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g009900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62850.1	AT	Nodulin MtN3 family protein	JGI	N/A	IEA
GO:0008643	GO-bp	carbohydrate transport	EnsemblGenomes	N/A	IEA
GO:0034219	GO-bp	carbohydrate transmembrane transport	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	JGI	N/A	IEA
GO:0051119	GO-mf	sugar transmembrane transporter activity	EnsemblGenomes	N/A	IEA
KOG1623	KOG	Multitransmembrane protein	JGI	N/A	IEA
PTHR10791	Panther	RAG1-ACTIVATING PROTEIN 1	JGI	N/A	IEA
PF03083	PFAM	Sugar efflux transporter for intercellular exchange	JGI	N/A	IEA

Proteins Associated with Glyma.19g009900

Locus	Gene Symbol	Protein Name
	SWEET48	sugar efflux transporter SWEET48

Expression Patterns of Glyma.19g009900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g009900

Paralog	Evidence	Comments
Glyma.13g169700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g009900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g01280	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g009900

Limit To All Plant Sequences

>Glyma.19g009900.2 sequence-type=transcript locus=Glyma.19g009900 ID=Glyma.19g009900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGCTTCCAACCTCATGCATTCTATtcttctctttctctctctctctctctcactttctctacctttctATGAATTTCTGTTGCATTAAATTTTCTCTGCAGAAAAAAAAGAGCTTCCACAATGGTAAGCGCTGCAATTGCTCGTAACGTCGTCGGCGTAATAGGCAATATCATTTCCTTTGGCTTGTTCTTTTCACCTGCTCCAACTTTCTATGGAATTGTAAAGAAGAAGACGGTGGAGGAGTTCAAGCCAGATCCTTATATAGCAACGGTGTTGAATTGTGCGTTTTGGGTGTTCTATGGAATGCCTTTTGTGCACCCAAACAGCATTTTAGTTGTCACTATCAACAGCGTTGGGCTTGCGTTCGAGTTTGTCTATCTTACCATATATTATGTCTATGCTACCAACAAAGGACGGAAAAAGCTACTGATTTTTCTTCTCATCGAGGTTGTTTTCTTTGCTGCCGTTGCTCTTATAACAATGCTGGCATTGCATGGCACTCGCCAAAGGTCGTTAGTGGTTGGTGTTCTCTCTGATATCTTCAATGTTATGATGTATGTCTCCCCTCTTACAATTATGGCAAAGGTTATAAAAACTAAGAGTGTGAAATACATGCCATTCTGGCTCTCTCTGGCTAACTTCCTTAATGGTGCGTGTTGGACAACATATGCTCTCATCCACCCATTTGACCTTTATGTCCTGATCAGCAATGGTATCGGAGCAATCTCTGGGCTTATTCAGCTTATATTGTATGCTTGCTACTGCTCTTGCAAGAGTAAAAATGATGAGGATGGTGATCAAGATTTGAAACCAAGTGGCTTTCAGCTCTCTAACTTAAACGGAAGAGCTGCAGTAGTCTGATGTCACATATATCAACATCCGTTTAAAACCTTTCTTTTTCTTTTTTCTTTTTACTCCTTCTTGACCTTATATTTAATCCTTTCTTTTTCTTTTTTTTTAACTCCTTCTTGACCTTATATTTCTATCTGTCCTTTAAATTTCAATGTCAAatatgacatttatatagatatagatacatatatacgatGGTGTTGCTTTTTATAATATGCGTGTGATGCATACTAGTTAAGCACTAGTTTGGATTTTCATTTTCAAATTTTGGATTGTAGACTGGAATATGTTTATATTTGCTCAGACCATGCATAATTCCCAGCTAAGAGTGAGATCTTTACCAAAGCAACCTTAGTTAGTGTGCGTAGAGTATATTGAGTAACTTTGTTTTTTACTCGTTGCTTGCATGTTAGAAGCTTCATAATAAGTTAGAAAACTGTATT

Coding sequences of Glyma.19g009900

Limit To All Plant Sequences

>Glyma.19g009900.1 sequence-type=CDS polypeptide=Glyma.19g009900.1.p locus=Glyma.19g009900 ID=Glyma.19g009900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTAAGCGCTGCAATTGCTCGTAACGTCGTCGGCGTAATAGGCAATATCATTTCCTTTGGCTTGTTCTTTTCACCTGCTCCAACTTTCTATGGAATTGTAAAGAAGAAGACGGTGGAGGAGTTCAAGCCAGATCCTTATATAGCAACGGTGTTGAATTGTGCGTTTTGGGTGTTCTATGGAATGCCTTTTGTGCACCCAAACAGCATTTTAGTTGTCACTATCAACAGCGTTGGGCTTGCGTTCGAGTTTGTCTATCTTACCATATATTATGTCTATGCTACCAACAAAGGACGGAAAAAGCTACTGATTTTTCTTCTCATCGAGGTTGTTTTCTTTGCTGCCGTTGCTCTTATAACAATGCTGGCATTGCATGGCACTCGCCAAAGGTCGTTAGTGGTTGGTGTTCTCTCTGATATCTTCAATGTTATGATGTATGTCTCCCCTCTTACAATTATGGCAAAGGTTATAAAAACTAAGAGTGTGAAATACATGCCATTCTGGCTCTCTCTGGCTAACTTCCTTAATGGTGCGTGTTGGACAACATATGCTCTCATCCACCCATTTGACCTTTATGTCCTGATCAGCAATGGTATCGGAGCAATCTCTGGGCTTATTCAGCTTATATTGTATGCTTGCTACTGCTCTTGCAAGAGTAAAAATGATGAGGATGGTGATCAAGATTTGAAACCAAGTGGCTTTCAGCTCTCTAACTTAAACGGAAGAGCTGCAGTAGTCTGA

>Glyma.19g009900.2 sequence-type=CDS polypeptide=Glyma.19g009900.2.p locus=Glyma.19g009900 ID=Glyma.19g009900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTAAGCGCTGCAATTGCTCGTAACGTCGTCGGCGTAATAGGCAATATCATTTCCTTTGGCTTGTTCTTTTCACCTGCTCCAACTTTCTATGGAATTGTAAAGAAGAAGACGGTGGAGGAGTTCAAGCCAGATCCTTATATAGCAACGGTGTTGAATTGTGCGTTTTGGGTGTTCTATGGAATGCCTTTTGTGCACCCAAACAGCATTTTAGTTGTCACTATCAACAGCGTTGGGCTTGCGTTCGAGTTTGTCTATCTTACCATATATTATGTCTATGCTACCAACAAAGGACGGAAAAAGCTACTGATTTTTCTTCTCATCGAGGTTGTTTTCTTTGCTGCCGTTGCTCTTATAACAATGCTGGCATTGCATGGCACTCGCCAAAGGTCGTTAGTGGTTGGTGTTCTCTCTGATATCTTCAATGTTATGATGTATGTCTCCCCTCTTACAATTATGGCAAAGGTTATAAAAACTAAGAGTGTGAAATACATGCCATTCTGGCTCTCTCTGGCTAACTTCCTTAATGGTGCGTGTTGGACAACATATGCTCTCATCCACCCATTTGACCTTTATGTCCTGATCAGCAATGGTATCGGAGCAATCTCTGGGCTTATTCAGCTTATATTGTATGCTTGCTACTGCTCTTGCAAGAGTAAAAATGATGAGGATGGTGATCAAGATTTGAAACCAAGTGGCTTTCAGCTCTCTAACTTAAACGGAAGAGCTGCAGTAGTCTGA

Predicted protein sequences of Glyma.19g009900

Limit To All Plant Sequences

>Glyma.19g009900.1.p sequence-type=predicted peptide transcript=Glyma.19g009900.1 locus=Glyma.19g009900 ID=Glyma.19g009900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVSAAIARNVVGVIGNIISFGLFFSPAPTFYGIVKKKTVEEFKPDPYIATVLNCAFWVFYGMPFVHPNSILVVTINSVGLAFEFVYLTIYYVYATNKGRKKLLIFLLIEVVFFAAVALITMLALHGTRQRSLVVGVLSDIFNVMMYVSPLTIMAKVIKTKSVKYMPFWLSLANFLNGACWTTYALIHPFDLYVLISNGIGAISGLIQLILYACYCSCKSKNDEDGDQDLKPSGFQLSNLNGRAAVV*

>Glyma.19g009900.2.p sequence-type=predicted peptide transcript=Glyma.19g009900.2 locus=Glyma.19g009900 ID=Glyma.19g009900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVSAAIARNVVGVIGNIISFGLFFSPAPTFYGIVKKKTVEEFKPDPYIATVLNCAFWVFYGMPFVHPNSILVVTINSVGLAFEFVYLTIYYVYATNKGRKKLLIFLLIEVVFFAAVALITMLALHGTRQRSLVVGVLSDIFNVMMYVSPLTIMAKVIKTKSVKYMPFWLSLANFLNGACWTTYALIHPFDLYVLISNGIGAISGLIQLILYACYCSCKSKNDEDGDQDLKPSGFQLSNLNGRAAVV*

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