Glyma.19g009300

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Report for Sequence Feature Glyma.19g009300

Feature Type:	gene_model
Chromosome:	Gm19
Start:	881302
stop:	884263
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g009300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G27990.1	AT	Pre-rRNA-processing protein TSR2, conserved region	JGI	N/A	IEA
GO:0000462	GO-bp	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
KOG4032	KOG	Uncharacterized conserved protein	JGI	N/A	IEA
PTHR21250	Panther	UNCHARACTERIZED	JGI	N/A	IEA
PF10273	PFAM	Pre-rRNA-processing protein TSR2	JGI	N/A	IEA

Expression Patterns of Glyma.19g009300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g009300 not represented in the dataset	Glyma.19g009300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g009300

Paralog	Evidence	Comments
Glyma.13g169100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g009300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g01230	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g009300

Limit To All Plant Sequences

>Glyma.19g009300.2 sequence-type=transcript locus=Glyma.19g009300 ID=Glyma.19g009300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAATATAAAAATAATGGGGTGCATAAAACAATTTTCCTAGTTTTATTGCAACACGTACGGTACACAAACACAGCCCTAAATCCAGGCCCAAACCAAGACGTAGTTCTGCTTCTCAGTTCTCTCGAATCaatccggaatcccaaacccctaatccctaatcaatcgcaagttcgaatccctaatTTCAACCTGTTCTTCCTCAACGTGCGTCGTGAGCGAGTTAAGGTTAAGCAGGGAAAGACAAAGCGATTATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAgatgaagatggtgatcatgatgaaaaaatgattgtggatgataatTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAGATAAAAAGTATTTAATTTTTTTAAGGATGTGTAGTCCTCGTTCATTTGCTTGTGCTTTTTGAGGTATTGCAAACCTTCTTGAGGTGTGTAACTATATATCTCGGATTTTTTTGTTTTACTTATTTTAATGTCTCCTCCGTCTGAGGTCTTTAGAAAAAAAATGGATGAGCATATGTTGTAGGAAATCCTACATTATTTTTTGGTCTGTCTATGAAACATTTTATGTTTGTAGTTTATGCTACCGAAAGTTGTGTCTTATCTTGCATTGAAGTGATCCAATTATCTTCCAG

>Glyma.19g009300.3 sequence-type=transcript locus=Glyma.19g009300 ID=Glyma.19g009300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAATATAAAAATAATGGGGTGCATAAAACAATTTTCCTAGTTTTATTGCAACACGTACGGTACACAAACACAGCCCTAAATCCAGGCCCAAACCAAGACGTAGTTCTGCTTCTCAGTTCTCTCGAATCaatccggaatcccaaacccctaatccctaatcaatcgcaagttcgaatccctaatTTCAACCTGTTCTTCCTCAACGTGCGTCGTGAGCGAGTTAAGGTCCCTTTGGGAAAAAAAGGGTTTATTGTGTTCTGCTGACACATTGAACTATTGAAGCAGGGAAAGACAAAGCGATTATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAgatgaagatggtgatcatgatgaaaaaatgattgtggatgataatTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAGATAAAAAGTATTTAATTTTTTTAAGGATGTGTAGTCCTCGTTCATTTGCTTGTGCTTTTTGAGGTATTGCAAACCTTCTTGAGGTGTGTAACTATATATCTCGGATTTTTTTGTTTTACTTATTTTAATGTCTCCTCCGTCTGAGGTCTTTAGAAAAAAAATGGATGAGCATATGTTGTAGGAAATCCTACATTATTTTTTGGTCTGTCTATGAAACATTTTATGTTTGTAGTTTATGCTACCGAAAGTTGTGTCTTATCTTGCATTGAAGTGATCCAATTATCTTCCAG

>Glyma.19g009300.4 sequence-type=transcript locus=Glyma.19g009300 ID=Glyma.19g009300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAATATAAAAATAATGGGGTGCATAAAACAATTTTCCTAGTTTTATTGCAACACGTACGGTACACAAACACAGCCCTAAATCCAGGCCCAAACCAAGACGTAGTTCTGCTTCTCAGTTCTCTCGAATCaatccggaatcccaaacccctaatccctaatcaatcgcaagttcgaatccctaatTTCAACCTGTTCTTCCTCAACGTGCGTCGTGAGCGAGTTAAGGTTAAGGGAAAGACAAAGCGATTATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAgatgaagatggtgatcatgatgaaaaaatgattgtggatgataatTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAGATAAAAAGTATTTAATTTTTTTAAGGATGTGTAGTCCTCGTTCATTTGCTTGTGCTTTTTGAGGTATTGCAAACCTTCTTGAGGTGTGTAACTATATATCTCGGATTTTTTTGTTTTACTTATTTTAATGTCTCCTCCGTCTGAGGTCTTTAGAAAAAAAATGGATGAGCATATGTTGTAGGAAATCCTACATTATTTTTTGGTCTGTCTATGAAACATTTTATGTTTGTAGTTTATGCTACCGAAAGTTGTGTCTTATCTTGCATTGAAGTGATCCAATTATCTTCCAG

>Glyma.19g009300.5 sequence-type=transcript locus=Glyma.19g009300 ID=Glyma.19g009300.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAATATAAAAATAATGGGGTGCATAAAACAATTTTCCTAGTTTTATTGCAACACGTACGGTACACAAACACAGCCCTAAATCCAGGCCCAAACCAAGACGTAGTTCTGCTTCTCAGTTCTCTCGAATCaatccggaatcccaaacccctaatccctaatcaatcgcaagttcgaatccctaatTTCAACCTGTTCTTCCTCAACGTGCGTCGTGAGCGAGTTAAGCAGGGAAAGACAAAGCGATTATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAgatgaagatggtgatcatgatgaaaaaatgattgtggatgataatTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAGATAAAAAGTATTTAATTTTTTTAAGGATGTGTAGTCCTCGTTCATTTGCTTGTGCTTTTTGAGGTATTGCAAACCTTCTTGAGGTGTGTAACTATATATCTCGGATTTTTTTGTTTTACTTATTTTAATGTCTCCTCCGTCTGAGGTCTTTAGAAAAAAAATGGATGAGCATATGTTGTAGGAAATCCTACATTATTTTTTGGTCTGTCTATGAAACATTTTATGTTTGTAGTTTATGCTACCGAAAGTTGTGTCTTATCTTGCATTGAAGTGATCCAATTATCTTCCAG

Coding sequences of Glyma.19g009300

Limit To All Plant Sequences

>Glyma.19g009300.1 sequence-type=CDS polypeptide=Glyma.19g009300.1.p locus=Glyma.19g009300 ID=Glyma.19g009300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAGATGAAGATGGTGATCATGATGAAAAAATGATTGTGGATGATAATTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAG

>Glyma.19g009300.2 sequence-type=CDS polypeptide=Glyma.19g009300.2.p locus=Glyma.19g009300 ID=Glyma.19g009300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAGATGAAGATGGTGATCATGATGAAAAAATGATTGTGGATGATAATTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAG

>Glyma.19g009300.3 sequence-type=CDS polypeptide=Glyma.19g009300.3.p locus=Glyma.19g009300 ID=Glyma.19g009300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAGATGAAGATGGTGATCATGATGAAAAAATGATTGTGGATGATAATTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAG

>Glyma.19g009300.4 sequence-type=CDS polypeptide=Glyma.19g009300.4.p locus=Glyma.19g009300 ID=Glyma.19g009300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAGATGAAGATGGTGATCATGATGAAAAAATGATTGTGGATGATAATTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAG

>Glyma.19g009300.5 sequence-type=CDS polypeptide=Glyma.19g009300.5.p locus=Glyma.19g009300 ID=Glyma.19g009300.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGGTTCACGACGGCTACTAGGACAGTCTGTAGGGGTTTTCAATGAAGGGATTTGTTTAGTTTTATCTCGCTGGTCGGCTCTTCGATCGGCTGTTGAGAATGAATGGGGCGGCCGTGAGTCCCGCCTTAAAGCCGATCAACTTGCCGGTGACATTCTTACCTGGTTCACTCAATCCAAAGAGCCACTTTATATTGATGACTTAGAAGACATACTGGATCAAGGTATGCTTTCTCTCAATGTAGAGGTCGAGGATGGCAGCGTTGAAGAGGTAGCTGAAAAACTAATGGTTATGCATGAAGAATTCTTAGAAGGTAATTTTAGTTCTTTTGAAGATCTCAGGAAAGCCAATCTTGAGCAAGCTACTCTTCCTCATGTAACACAGATTGTAAACGAAGACGATTCAGATGAAGATGGTGATCATGATGAAAAAATGATTGTGGATGATAATTCTTCAAACATGAATCCGGAGATTTCAACATCTGATTCAAACATGAATTCAGTGAACAGGCCAGTAAATGAGCCTCTACCAAAGGTTTCAGGCAAAGCAGATGATGGATGGGTTGTAGTTTCAAACAAAAGAAATAAGGGAAGAAAAAATTAG

Predicted protein sequences of Glyma.19g009300

Limit To All Plant Sequences

>Glyma.19g009300.1.p sequence-type=predicted peptide transcript=Glyma.19g009300.1 locus=Glyma.19g009300 ID=Glyma.19g009300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDGSRRLLGQSVGVFNEGICLVLSRWSALRSAVENEWGGRESRLKADQLAGDILTWFTQSKEPLYIDDLEDILDQGMLSLNVEVEDGSVEEVAEKLMVMHEEFLEGNFSSFEDLRKANLEQATLPHVTQIVNEDDSDEDGDHDEKMIVDDNSSNMNPEISTSDSNMNSVNRPVNEPLPKVSGKADDGWVVVSNKRNKGRKN*

>Glyma.19g009300.2.p sequence-type=predicted peptide transcript=Glyma.19g009300.2 locus=Glyma.19g009300 ID=Glyma.19g009300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDGSRRLLGQSVGVFNEGICLVLSRWSALRSAVENEWGGRESRLKADQLAGDILTWFTQSKEPLYIDDLEDILDQGMLSLNVEVEDGSVEEVAEKLMVMHEEFLEGNFSSFEDLRKANLEQATLPHVTQIVNEDDSDEDGDHDEKMIVDDNSSNMNPEISTSDSNMNSVNRPVNEPLPKVSGKADDGWVVVSNKRNKGRKN*

>Glyma.19g009300.3.p sequence-type=predicted peptide transcript=Glyma.19g009300.3 locus=Glyma.19g009300 ID=Glyma.19g009300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDGSRRLLGQSVGVFNEGICLVLSRWSALRSAVENEWGGRESRLKADQLAGDILTWFTQSKEPLYIDDLEDILDQGMLSLNVEVEDGSVEEVAEKLMVMHEEFLEGNFSSFEDLRKANLEQATLPHVTQIVNEDDSDEDGDHDEKMIVDDNSSNMNPEISTSDSNMNSVNRPVNEPLPKVSGKADDGWVVVSNKRNKGRKN*

>Glyma.19g009300.4.p sequence-type=predicted peptide transcript=Glyma.19g009300.4 locus=Glyma.19g009300 ID=Glyma.19g009300.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDGSRRLLGQSVGVFNEGICLVLSRWSALRSAVENEWGGRESRLKADQLAGDILTWFTQSKEPLYIDDLEDILDQGMLSLNVEVEDGSVEEVAEKLMVMHEEFLEGNFSSFEDLRKANLEQATLPHVTQIVNEDDSDEDGDHDEKMIVDDNSSNMNPEISTSDSNMNSVNRPVNEPLPKVSGKADDGWVVVSNKRNKGRKN*

>Glyma.19g009300.5.p sequence-type=predicted peptide transcript=Glyma.19g009300.5 locus=Glyma.19g009300 ID=Glyma.19g009300.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDGSRRLLGQSVGVFNEGICLVLSRWSALRSAVENEWGGRESRLKADQLAGDILTWFTQSKEPLYIDDLEDILDQGMLSLNVEVEDGSVEEVAEKLMVMHEEFLEGNFSSFEDLRKANLEQATLPHVTQIVNEDDSDEDGDHDEKMIVDDNSSNMNPEISTSDSNMNSVNRPVNEPLPKVSGKADDGWVVVSNKRNKGRKN*

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