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Report for Sequence Feature Glyma.19g009100

Feature Type:gene_model
Chromosome:Gm19
Start:866583
stop:870397
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g009100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G14780.1AT formate dehydrogenase JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0042183GO-bp formate catabolic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0008863GO-mf formate dehydrogenase (NAD+) activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor EnsemblGenomesN/AIEA
GO:0016616GO-mf oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor JGI N/AIEA
GO:0048037GO-mf cofactor binding JGI N/AIEA
GO:0051287GO-mf NAD binding EnsemblGenomesN/AIEA
GO:0051287GO-mf NAD binding JGI N/AIEA
KOG0069 KOG Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) JGI N/AIEA
PTHR10996Panther 2-HYDROXYACID DEHYDROGENASE-RELATED JGI N/AIEA
PTHR10996:SF16Panther FORMATE DEHYDROGENASE 1-RELATED JGI N/AIEA
PF00389PFAM D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JGI N/AIEA
PF02826PFAM D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JGI N/AIEA
PWY-1881SoyCyc9 formate oxidation to CO2 Plant Metabolic Network ISS
GN7V-58060SoyCyc9-rxn formate dehydrogenase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g009100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g009100
ParalogEvidenceComments
Glyma.13g168700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g009100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g01210 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g009100
>Glyma.19g009100.2 sequence-type=transcript locus=Glyma.19g009100 ID=Glyma.19g009100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATTACAATTTTCTATTTTGTTTTAATTAGTGAAATTACTTGCATAGATAGATAATCATGGCTATGATGAAACGTGCTGCTTCCTCTGCGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAATATGCTAAATTGAATCCAAATTTTGTTGGATGTGTTGAAGGTGCATTGGGAATACGTGAGTGGCTGGAATCACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCACCCCGCCTATGTCACCGCAGAAAGAATTAAGAAAGCCAAAAATTTGGAGCTGCTTTTGACTGCTGGCATTGGTTCTGATCATGTTGATCTCAAAGCTGCAGCTGCTGCTGGTTTAACTGTGGCAGAGGTCACAGGAAGCAACGTTGTGTCGGTTGCGGAGGACGAACTCATGAGAATCCTCATTCTAATGAGGAATTTCTTGCCAGGGTACCATCAGGCTGTTAATGGGGAATGGAATGTTGCTGGCATTGCACATAGAGCTTATGATCTTGAAGGAAAGACAGTAGGAACCGTTGGCGCGGGTCGAATTGGGAAGCTTTTGCTCCAGAGGTTGAAACCTTTTAGCTGTAATCTTCTTTATTTTGATCGACTTAGGATAGATCCTGAATTGGAGAAAGAGATTGGAGCAAAATTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATTGTTAACAATGCTCGAGGGGCAATTGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCATGGCGCTACATGCCAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTGAAGACTTTCCAGAACAAAACTACATTGTGAAGGAGGGTCAACTTGCTAGCCAATACCGATGAAGTGGTGTGTGTCAATGTGGCCTTTGAATCTTCCAATTTTAAGGCCAATGAATATGAGCAAATAAAGATCTAGAAGGCACTCTAATTATGTAATGCACTTGCTTTGTTGAATTTGAACTCGTTTAATTGATCTCAGAAATAAAAGTTTAAGGAACACTCCATTTTCCATGTATTGTTCTTTCGTTTTTCGAATTTGAATGTACATTTACTTGTAGTGCAAAGAAATAAGTAGGCACGGTTAAC
Coding sequences of Glyma.19g009100
>Glyma.19g009100.1 sequence-type=CDS polypeptide=Glyma.19g009100.1.p locus=Glyma.19g009100 ID=Glyma.19g009100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGATCCCACACTAGCACAACAGCATCTAGTCAAAGTCCACACAACAACACACGAAACAGTTGTTACCACACACAATCATAACCAAACACCCTCAATAAATGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAATATGCTAAATTGAATCCAAATTTTGTTGGATGTGTTGAAGGTGCATTGGGAATACGTGAGTGGCTGGAATCACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCACCCCGCCTATGTCACCGCAGAAAGAATTAAGAAAGCCAAAAATTTGGAGCTGCTTTTGACTGCTGGCATTGGTTCTGATCATGTTGATCTCAAAGCTGCAGCTGCTGCTGGTTTAACTGTGGCAGAGGTCACAGGAAGCAACGTTGTGTCGGTTGCGGAGGACGAACTCATGAGAATCCTCATTCTAATGAGGAATTTCTTGCCAGGGTACCATCAGGCTGTTAATGGGGAATGGAATGTTGCTGGCATTGCACATAGAGCTTATGATCTTGAAGGAAAGACAGTAGGAACCGTTGGCGCGGGTCGAATTGGGAAGCTTTTGCTCCAGAGGTTGAAACCTTTTAGCTGTAATCTTCTTTATTTTGATCGACTTAGGATAGATCCTGAATTGGAGAAAGAGATTGGAGCAAAATTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATTGTTAACAATGCTCGAGGGGCAATTGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCATGGCGCTACATGCCAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTGAAGACTTTCCAGAACAAAACTACATTGTGAAGGAGGGTCAACTTGCTAGCCAATACCGATGA

>Glyma.19g009100.2 sequence-type=CDS polypeptide=Glyma.19g009100.2.p locus=Glyma.19g009100 ID=Glyma.19g009100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTATGATGAAACGTGCTGCTTCCTCTGCGCTTCGCTCTCTTATTGCCTCATCCTCCACCTTCACCAGAAACCTTCATGCCTCAGGTGAAAAGAAGAAGATTGTGGGGGTGTTCTACAAAGGGAATGAATATGCTAAATTGAATCCAAATTTTGTTGGATGTGTTGAAGGTGCATTGGGAATACGTGAGTGGCTGGAATCACAGGGTCATCAGTACATTGTCACTGATGACAAAGAAGGACCTGATTCTGAACTTGAGAAACACATTCCAGATGCACATGTCATCATATCTACTCCATTCCACCCCGCCTATGTCACCGCAGAAAGAATTAAGAAAGCCAAAAATTTGGAGCTGCTTTTGACTGCTGGCATTGGTTCTGATCATGTTGATCTCAAAGCTGCAGCTGCTGCTGGTTTAACTGTGGCAGAGGTCACAGGAAGCAACGTTGTGTCGGTTGCGGAGGACGAACTCATGAGAATCCTCATTCTAATGAGGAATTTCTTGCCAGGGTACCATCAGGCTGTTAATGGGGAATGGAATGTTGCTGGCATTGCACATAGAGCTTATGATCTTGAAGGAAAGACAGTAGGAACCGTTGGCGCGGGTCGAATTGGGAAGCTTTTGCTCCAGAGGTTGAAACCTTTTAGCTGTAATCTTCTTTATTTTGATCGACTTAGGATAGATCCTGAATTGGAGAAAGAGATTGGAGCAAAATTTGAGGAGGACCTTGATGCAATGCTTCCAAAGTGTGATGTGATTGTTATCAACACCCCTCTCACTGAGCAGACAAGGGGATTGTTTGACAAAAATAGAATTGCTAAGTGCAAGAAAGGTGTCTTGATTGTTAACAATGCTCGAGGGGCAATTGCGGACACTCAAGCAATTGCTGATGCTTGCTCCAGTGGCCACGTTGCAGGTTATAGTGGTGATGTTTGGTTCCCACAACCAGCTCCAAAGGATCATCCATGGCGCTACATGCCAAACCATGCCATGACTCCTCATATTTCTGGTACCACCATTGATGCACAGTTACGTTATGCTGCTGGTGTCAAAGACATGCTTGATAGGCACTTCAAGGGTGAAGACTTTCCAGAACAAAACTACATTGTGAAGGAGGGTCAACTTGCTAGCCAATACCGATGA
Predicted protein sequences of Glyma.19g009100
>Glyma.19g009100.1.p sequence-type=predicted peptide transcript=Glyma.19g009100.1 locus=Glyma.19g009100 ID=Glyma.19g009100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSDPTLAQQHLVKVHTTTHETVVTTHNHNQTPSINASGEKKKIVGVFYKGNEYAKLNPNFVGCVEGALGIREWLESQGHQYIVTDDKEGPDSELEKHIPDAHVIISTPFHPAYVTAERIKKAKNLELLLTAGIGSDHVDLKAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFLPGYHQAVNGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFSCNLLYFDRLRIDPELEKEIGAKFEEDLDAMLPKCDVIVINTPLTEQTRGLFDKNRIAKCKKGVLIVNNARGAIADTQAIADACSSGHVAGYSGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRHFKGEDFPEQNYIVKEGQLASQYR*

>Glyma.19g009100.2.p sequence-type=predicted peptide transcript=Glyma.19g009100.2 locus=Glyma.19g009100 ID=Glyma.19g009100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAMMKRAASSALRSLIASSSTFTRNLHASGEKKKIVGVFYKGNEYAKLNPNFVGCVEGALGIREWLESQGHQYIVTDDKEGPDSELEKHIPDAHVIISTPFHPAYVTAERIKKAKNLELLLTAGIGSDHVDLKAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFLPGYHQAVNGEWNVAGIAHRAYDLEGKTVGTVGAGRIGKLLLQRLKPFSCNLLYFDRLRIDPELEKEIGAKFEEDLDAMLPKCDVIVINTPLTEQTRGLFDKNRIAKCKKGVLIVNNARGAIADTQAIADACSSGHVAGYSGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRHFKGEDFPEQNYIVKEGQLASQYR*






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