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Report for Sequence Feature Glyma.19g008700

Feature Type:gene_model
Chromosome:Gm19
Start:847909
stop:850573
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g008700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G23740.1AT Oxidoreductase, zinc-binding dehydrogenase family protein JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
KOG1198 KOG Zinc-binding oxidoreductase JGI N/AIEA
PTHR11695Panther ALCOHOL DEHYDROGENASE RELATED JGI N/AIEA
PTHR11695:SF34Panther JGI N/AIEA
PF00107PFAM Zinc-binding dehydrogenase JGI N/AIEA
PF08240PFAM Alcohol dehydrogenase GroES-like domain JGI N/AIEA
PWY-5975SoyCyc9 furaneol and mesifurane biosynthesis Plant Metabolic Network ISS
GN7V-67799SoyCyc9-rxn 2-butyl-4-hydroxy-5-methyl-3(2H)-furanoneoxidoreductase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g008700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g008700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g01160 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g008700
>Glyma.19g008700.2 sequence-type=transcript locus=Glyma.19g008700 ID=Glyma.19g008700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTCCCATGAGTTTTTAAACTTCAAATAACATCATGAACCTTGCCAGAAAATCGTCATCATGAACGCTTGATGATTTTGGCATGAAAATTAATGGCCAACAAGAAAATTGAAATTGAAATCCAAAGTGATAAAAGTGACCACTCAGATAATGGCAAGCACTCCTAGCATTCCATCACACATAAAAGCTTGGGCTTATTCTGAATATGGGAACACAGAAGAGATTCTCAAATTTGAATCTAACATACCTATACCAGACATCAAGGAAGACCAAGTGCTCATCAAGGTTGTGGCTGCAGCCCTTAACCCAATAGATTATAAGAGGGCTCATGGGTTTTTGAAGAACACTGATTCTCCCTTTCCTACTGTTCCGGGGTACGATGTTGCTGGTGTGGTGGTCAAAGTGGGAAGTCAAGTGAGTAAATTCAAGGTTGGGGATGGGGTTTATGGTGACATCAATGAGGATCCTGTGAATAATCCAAAGGCCATTGGGTCTTTGGCAGAGTACACTGCTGTTGAAGAGAAAGTGTTGGCTCACAAACCCTCCAATTTGAGCTTTGTTGAAGCTGCTAGCCTTCCTTTGGCCATCATAACTGCTTATCAAGGATTTGAAAAGGTTGAGTTTTCTGCTGGCAAATCTATACTTGTTCTTGGGGGTGCTGGTGGAGTTGGATCCCTTGTTATTCAGCTCGCGAAGCACGTTTTTGGCGCATCAAAGGTTGCAGCCACAGCTAGTACTGCAAAACTGGATTTGTTAAGGAACTTGGGAGCAGACTTAGCTATTGATTATACTAAGGAGAATTTTGAAGAACTGGAAGAGAAGTTTGATGTAGTGTACGACACAGTAGGAGAAAGTGAGACTGAGAAGGCATTGAAGGCTGTTAAAGAAAGTGGCAAAGTTGTGACAATAGTGAGATTTGGACATCCTGAAGCTATATTCTTCATACGAATTTCAGATGGTACTGTGTTGGAGAAACTAAAACCTTACTTAGAGAGTGGGAAGGTGAAGCCAATATTGGACCCTAAGAGTCCCTATCCATTTTCTCAGACCGTGGAGGCATTTGCACACTTGAAGACTAATAGAGCCATTGGGAAAGTGGTCATACATCCCATTCCATAATTTATGTTTGCGTGATCAAACGTGAATATCTCTTTCAGAATTGTGGTGGTGAAAATTAGATACTTGGCTTGTGGTTTGGTTGCAATATAAATAATAAGACTCAATTGGTCCAAAATTTCCAAAGGATGAAAA
Coding sequences of Glyma.19g008700
>Glyma.19g008700.1 sequence-type=CDS polypeptide=Glyma.19g008700.1.p locus=Glyma.19g008700 ID=Glyma.19g008700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAAGCACTCCTAGCATTCCATCACACATAAAAGCTTGGGCTTATTCTGAATATGGGAACACAGAAGAGATTCTCAAATTTGAATCTAACATACCTATACCAGACATCAAGGAAGACCAAGTGCTCATCAAGGTTGTGGCTGCAGCCCTTAACCCAATAGATTATAAGAGGGCTCATGGGTTTTTGAAGAACACTGATTCTCCCTTTCCTACTGTTCCGGGGTACGATGTTGCTGGTGTGGTGGTCAAAGTGGGAAGTCAAGTGAGTAAATTCAAGGTTGGGGATGGGGTTTATGGTGACATCAATGAGGATCCTGTGAATAATCCAAAGGCCATTGGGTCTTTGGCAGAGTACACTGCTGTTGAAGAGAAAGTGTTGGCTCACAAACCCTCCAATTTGAGCTTTGTTGAAGCTGCTAGCCTTCCTTTGGCCATCATAACTGCTTATCAAGGATTTGAAAAGGTTGAGTTTTCTGCTGGCAAATCTATACTTGTTCTTGGGGGTGCTGGTGGAGTTGGATCCCTTGTTATTCAGCTCGCGAAGCACGTTTTTGGCGCATCAAAGGTTGCAGCCACAGCTAGTACTGCAAAACTGGATTTGTTAAGGAACTTGGGAGCAGACTTAGCTATTGATTATACTAAGGAGAATTTTGAAGAACTGGAAGAGAAGTTTGATGTAGTGTACGACACAGTAGGAGAAAGTGAGACTGAGAAGGCATTGAAGGCTGTTAAAGAAAGTGGCAAAGTTGTGACAATAGTGAGATTTGGACATCCTGAAGCTATATTCTTCATACGAATTTCAGATGGTACTGTGTTGGAGAAACTAAAACCTTACTTAGAGAGTGGGAAGGTGAAGCCAATATTGGACCCTAAGAGTCCCTATCCATTTTCTCAGACCGTGGAGGCATTTGCACACTTGAAGACTAATAGAGCCATTGGGAAAGTGGTCATACATCCCATTCCATAA

>Glyma.19g008700.2 sequence-type=CDS polypeptide=Glyma.19g008700.2.p locus=Glyma.19g008700 ID=Glyma.19g008700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAAGCACTCCTAGCATTCCATCACACATAAAAGCTTGGGCTTATTCTGAATATGGGAACACAGAAGAGATTCTCAAATTTGAATCTAACATACCTATACCAGACATCAAGGAAGACCAAGTGCTCATCAAGGTTGTGGCTGCAGCCCTTAACCCAATAGATTATAAGAGGGCTCATGGGTTTTTGAAGAACACTGATTCTCCCTTTCCTACTGTTCCGGGGTACGATGTTGCTGGTGTGGTGGTCAAAGTGGGAAGTCAAGTGAGTAAATTCAAGGTTGGGGATGGGGTTTATGGTGACATCAATGAGGATCCTGTGAATAATCCAAAGGCCATTGGGTCTTTGGCAGAGTACACTGCTGTTGAAGAGAAAGTGTTGGCTCACAAACCCTCCAATTTGAGCTTTGTTGAAGCTGCTAGCCTTCCTTTGGCCATCATAACTGCTTATCAAGGATTTGAAAAGGTTGAGTTTTCTGCTGGCAAATCTATACTTGTTCTTGGGGGTGCTGGTGGAGTTGGATCCCTTGTTATTCAGCTCGCGAAGCACGTTTTTGGCGCATCAAAGGTTGCAGCCACAGCTAGTACTGCAAAACTGGATTTGTTAAGGAACTTGGGAGCAGACTTAGCTATTGATTATACTAAGGAGAATTTTGAAGAACTGGAAGAGAAGTTTGATGTAGTGTACGACACAGTAGGAGAAAGTGAGACTGAGAAGGCATTGAAGGCTGTTAAAGAAAGTGGCAAAGTTGTGACAATAGTGAGATTTGGACATCCTGAAGCTATATTCTTCATACGAATTTCAGATGGTACTGTGTTGGAGAAACTAAAACCTTACTTAGAGAGTGGGAAGGTGAAGCCAATATTGGACCCTAAGAGTCCCTATCCATTTTCTCAGACCGTGGAGGCATTTGCACACTTGAAGACTAATAGAGCCATTGGGAAAGTGGTCATACATCCCATTCCATAA
Predicted protein sequences of Glyma.19g008700
>Glyma.19g008700.1.p sequence-type=predicted peptide transcript=Glyma.19g008700.1 locus=Glyma.19g008700 ID=Glyma.19g008700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASTPSIPSHIKAWAYSEYGNTEEILKFESNIPIPDIKEDQVLIKVVAAALNPIDYKRAHGFLKNTDSPFPTVPGYDVAGVVVKVGSQVSKFKVGDGVYGDINEDPVNNPKAIGSLAEYTAVEEKVLAHKPSNLSFVEAASLPLAIITAYQGFEKVEFSAGKSILVLGGAGGVGSLVIQLAKHVFGASKVAATASTAKLDLLRNLGADLAIDYTKENFEELEEKFDVVYDTVGESETEKALKAVKESGKVVTIVRFGHPEAIFFIRISDGTVLEKLKPYLESGKVKPILDPKSPYPFSQTVEAFAHLKTNRAIGKVVIHPIP*

>Glyma.19g008700.2.p sequence-type=predicted peptide transcript=Glyma.19g008700.2 locus=Glyma.19g008700 ID=Glyma.19g008700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASTPSIPSHIKAWAYSEYGNTEEILKFESNIPIPDIKEDQVLIKVVAAALNPIDYKRAHGFLKNTDSPFPTVPGYDVAGVVVKVGSQVSKFKVGDGVYGDINEDPVNNPKAIGSLAEYTAVEEKVLAHKPSNLSFVEAASLPLAIITAYQGFEKVEFSAGKSILVLGGAGGVGSLVIQLAKHVFGASKVAATASTAKLDLLRNLGADLAIDYTKENFEELEEKFDVVYDTVGESETEKALKAVKESGKVVTIVRFGHPEAIFFIRISDGTVLEKLKPYLESGKVKPILDPKSPYPFSQTVEAFAHLKTNRAIGKVVIHPIP*






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