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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G23740.1 | AT | Oxidoreductase, zinc-binding dehydrogenase family protein | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| KOG1198 | KOG | Zinc-binding oxidoreductase | JGI | N/A | IEA |
| PTHR11695 | Panther | ALCOHOL DEHYDROGENASE RELATED | JGI | N/A | IEA |
| PTHR11695:SF34 | Panther | JGI | N/A | IEA | |
| PF00107 | PFAM | Zinc-binding dehydrogenase | JGI | N/A | IEA |
| PF08240 | PFAM | Alcohol dehydrogenase GroES-like domain | JGI | N/A | IEA |
| PWY-5975 | SoyCyc9 | furaneol and mesifurane biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-56002 | SoyCyc9-rxn | furaneol oxidoreductase | Plant Metabolic Network | ISS |
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Glyma.19g008600 not represented in the dataset |
Glyma.19g008600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g01150 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g008600.1 sequence-type=CDS polypeptide=Glyma.19g008600.1.p locus=Glyma.19g008600 ID=Glyma.19g008600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCAAGCATTTATAACATTCCATCACACATAAAAGCTTGGGTCTATTATGAATATGGAAACATAGAAGAGATTCTCAAATTTGAATCTAACATACCCATACCAGACATCAAGGAAGACCAAGTGCTCATCAAGGTTGTGGCTGCGGCGCTTAATCCTGCAGATTATATGAGGGCTCTTGGGTTTTTCAAGGACACTGATGCACCCTTACCTATTGTTCCAGGGTTTGATGCTGCTGGTGTGGTGGTGAGAGTGGGAAGTAAAGTGAGCAAATTCAAGGTTGGAGATGAAGTTTATGGTGATATCATTGAGTATGCTTGGAATAATCCAAAGACCATTGGGACTTTGGCAGAATATACTGCTACTGAGGAGAAAGTGTTGGCTCACAAACCCTCCAATTTAAGCTTTATTGAAGCAGCTAGCCTTCCTGCAGCCATCATCACTGCTTATCAAGGATTTGATAAAATTGAGTTTTCTGCTGGCAAATCTATACTTGTTCTAGGAGGTGCTGGTGGAGTTGGATCCCTTGTTATTCAGCTCGCCAAGCACGTTTTTGGCGCATCTAAGGTTGCAGCCACTGCTAGTACTCCGAAACAGGATTTGTTGAGGAGCTTAGGAGCAGACTTGGCTATTGATTATACAAAGGAGAATTTTGAAGAACTGGTAGAAAAGTTTGATGTAGTGTATGATACAGTAGGAGAAAGTAATAAGGCATTGAAGGCTGTTAAAGAAGGGGGCAAAGTTGTGACAATAGTACCACCGGCGACTCCACCGGCTATAACCTTCTCTGCAGTTTCAGATGGTGCGGTGTTGGAGAAATTACAGCCTTACTTAGAAAGTGGAAAGGTGAAGCCAGTATTGGATCCTAAGGGTCCCTTTCCATTCTCTCAGACAGTGGAAGCATTTGCATACTTGAAGACTAATAGAGCCATTGGGAAAGTAGTTCTACATCCCATCCCATAA
>Glyma.19g008600.1.p sequence-type=predicted peptide transcript=Glyma.19g008600.1 locus=Glyma.19g008600 ID=Glyma.19g008600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MASIYNIPSHIKAWVYYEYGNIEEILKFESNIPIPDIKEDQVLIKVVAAALNPADYMRALGFFKDTDAPLPIVPGFDAAGVVVRVGSKVSKFKVGDEVYGDIIEYAWNNPKTIGTLAEYTATEEKVLAHKPSNLSFIEAASLPAAIITAYQGFDKIEFSAGKSILVLGGAGGVGSLVIQLAKHVFGASKVAATASTPKQDLLRSLGADLAIDYTKENFEELVEKFDVVYDTVGESNKALKAVKEGGKVVTIVPPATPPAITFSAVSDGAVLEKLQPYLESGKVKPVLDPKGPFPFSQTVEAFAYLKTNRAIGKVVLHPIP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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