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Report for Sequence Feature Glyma.19g008300

Feature Type:gene_model
Chromosome:Gm19
Start:820432
stop:824409
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g008300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G23740.1AT Oxidoreductase, zinc-binding dehydrogenase family protein JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
KOG1198 KOG Zinc-binding oxidoreductase JGI N/AIEA
PTHR11695Panther ALCOHOL DEHYDROGENASE RELATED JGI N/AIEA
PTHR11695:SF34Panther JGI N/AIEA
PF00107PFAM Zinc-binding dehydrogenase JGI N/AIEA
PF08240PFAM Alcohol dehydrogenase GroES-like domain JGI N/AIEA
PWY-5975SoyCyc9 furaneol and mesifurane biosynthesis Plant Metabolic Network ISS
GN7V-50974SoyCyc9-rxn 4-hydroxy-5-methyl-2-propyl-3(2H)-furanone oxidoreductase Plant Metabolic Network ISS

Expression Patterns of Glyma.19g008300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g008300 not represented in the dataset
Glyma.19g008300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19g008300
ParalogEvidenceComments
Glyma.05g007900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g008300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g01120 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.19g008300
>Glyma.19g008300.2 sequence-type=transcript locus=Glyma.19g008300 ID=Glyma.19g008300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATTCAACATACAAGTTTTTGaagatgcttcaattaTTCCAACACACACAAAAGCTTGGTACTACTCTGAACATGGTAGTCCAGGTGATGTTCTCAAATTAGATCCTAATTGGCCCTTACCCCAACAACTCAAAGATGACCAAGTGCTCATCAAGGTCATCGCTGCATCCATTAATCCCGTTGATTACAAGAGGATGCACGGCGAGTTCAAGGACACTGACCCTCATCTGCCTATTGTGCCGGGTTATGATGTTGCTGGCATAGTAGTGAAAGTGGGAGGAGAAGTAAAAAAATTTAAGGTTGGAGATGAAGTATATGGTGATATCAACGAGCAAGGCTTGTCGAACCTTAAGATTCATGGCACTTTGTCAGAGTATACTATTGCAGAAGAGAGACTATTGGCTCATAAACCATCCAATCTAAGCTTCATTGAAGCTGCTAGCATTCCTTTAGCACTTGAGACTGCTAACGAAGGTTTTGAACATGCTCACTTCTCTGCTGGCAAATCTATCCTTGTTTTGGGAGGAGCTGGTGGAGTTGGAAACTATGTTATTCAGCTAGCTAAACAAGTTTATAAGGCGTCTAAGATAGCAGCAACTGCTAGCACCGGCAAACTTGAACTTTTAAGGGAGTTGGGCGTTGACTTGCCTATTGATTACACAAAGGAGAACTTTGAAGACCTTCCAGAAAAATACGATCTAGTGTATGATGTAGTAGGGCAAGGTGATAGAGCATTTAAGGCCGTTAAGGAAGATGGGAAAGTTGTGACAATAGTACCACCTGGACATCCACCAGCTATGTTTTTCGTGCTCACCTCAAAGGGATCTATCTTAGAGAATTTAAGACCTTACTTTGAGAGTGGTAAGTTGAAGCCTATACTCGATGCCAAGACTCCAGTGCCATTTTCTCAGGTTATTGAAGCCATTTCCTACTTAGAAACTTCAAGAGCCACAGGAAAAGTGGTCGTTTATCCCATACCCTAACCACAATATATTATTAACTCATCATATAATTATAATTAATAATGAACATTAATTTTAAAGTGTGTACTAAGATAATTGATCAATTAATTAAGGTTTGTGTCAAACAAAGTCCCTTGTACTACTATGCTTTATGTTTATGTATACAAAGAAACCTTGCTGCTGAAAATAAAGATTGATATATGGTTGCAATGTGATCAAATATATCTTATTGGTAGACGATATGTAAATATTCTTGTAAGCATTCTATGAGTTTTGATGCATGTTCTAGTTTGAGTGAATTCCGGCAACTGATCAACTCATCTATTTTTATTTTTTTTTATCAATTAGCCAATAAAAGTGAATAAATAAATAAAAAAGATTGGTAATTGATGTATCTGAAAACCATGATCTAGTTCATGTACATGCAGTTGAAATTCTAGGTTGAAACGGACAAGACCTGGTTTTTACTCTCAGAGGCAGTTTGtatactttatatttttcatttttataccatattttatatatatatttttctactatatgttGATTTTTCTTCTTGTGTTTGATGTAAATTTTGTTGAAACACAGATGCGTGTATCAGTACTACATTATGACTTCCCTTTGCTCTCAAATGT
Coding sequences of Glyma.19g008300
>Glyma.19g008300.1 sequence-type=CDS polypeptide=Glyma.19g008300.1.p locus=Glyma.19g008300 ID=Glyma.19g008300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCAGAAGATGCTTCAATTATTCCAACACACACAAAAGCTTGGTACTACTCTGAACATGGTAGTCCAGGTGATGTTCTCAAATTAGATCCTAATTGGCCCTTACCCCAACAACTCAAAGATGACCAAGTGCTCATCAAGGTCATCGCTGCATCCATTAATCCCGTTGATTACAAGAGGATGCACGGCGAGTTCAAGGACACTGACCCTCATCTGCCTATTGTGCCGGGTTATGATGTTGCTGGCATAGTAGTGAAAGTGGGAGGAGAAGTAAAAAAATTTAAGGTTGGAGATGAAGTATATGGTGATATCAACGAGCAAGGCTTGTCGAACCTTAAGATTCATGGCACTTTGTCAGAGTATACTATTGCAGAAGAGAGACTATTGGCTCATAAACCATCCAATCTAAGCTTCATTGAAGCTGCTAGCATTCCTTTAGCACTTGAGACTGCTAACGAAGGTTTTGAACATGCTCACTTCTCTGCTGGCAAATCTATCCTTGTTTTGGGAGGAGCTGGTGGAGTTGGAAACTATGTTATTCAGCTAGCTAAACAAGTTTATAAGGCGTCTAAGATAGCAGCAACTGCTAGCACCGGCAAACTTGAACTTTTAAGGGAGTTGGGCGTTGACTTGCCTATTGATTACACAAAGGAGAACTTTGAAGACCTTCCAGAAAAATACGATCTAGTGTATGATGTAGTAGGGCAAGGTGATAGAGCATTTAAGGCCGTTAAGGAAGATGGGAAAGTTGTGACAATAGTACCACCTGGACATCCACCAGCTATGTTTTTCGTGCTCACCTCAAAGGGATCTATCTTAGAGAATTTAAGACCTTACTTTGAGAGTGGTAAGTTGAAGCCTATACTCGATGCCAAGACTCCAGTGCCATTTTCTCAGGTTATTGAAGCCATTTCCTACTTAGAAACTTCAAGAGCCACAGGAAAAGTGGTCGTTTATCCCATACCCTAA

>Glyma.19g008300.2 sequence-type=CDS polypeptide=Glyma.19g008300.2.p locus=Glyma.19g008300 ID=Glyma.19g008300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCACGGCGAGTTCAAGGACACTGACCCTCATCTGCCTATTGTGCCGGGTTATGATGTTGCTGGCATAGTAGTGAAAGTGGGAGGAGAAGTAAAAAAATTTAAGGTTGGAGATGAAGTATATGGTGATATCAACGAGCAAGGCTTGTCGAACCTTAAGATTCATGGCACTTTGTCAGAGTATACTATTGCAGAAGAGAGACTATTGGCTCATAAACCATCCAATCTAAGCTTCATTGAAGCTGCTAGCATTCCTTTAGCACTTGAGACTGCTAACGAAGGTTTTGAACATGCTCACTTCTCTGCTGGCAAATCTATCCTTGTTTTGGGAGGAGCTGGTGGAGTTGGAAACTATGTTATTCAGCTAGCTAAACAAGTTTATAAGGCGTCTAAGATAGCAGCAACTGCTAGCACCGGCAAACTTGAACTTTTAAGGGAGTTGGGCGTTGACTTGCCTATTGATTACACAAAGGAGAACTTTGAAGACCTTCCAGAAAAATACGATCTAGTGTATGATGTAGTAGGGCAAGGTGATAGAGCATTTAAGGCCGTTAAGGAAGATGGGAAAGTTGTGACAATAGTACCACCTGGACATCCACCAGCTATGTTTTTCGTGCTCACCTCAAAGGGATCTATCTTAGAGAATTTAAGACCTTACTTTGAGAGTGGTAAGTTGAAGCCTATACTCGATGCCAAGACTCCAGTGCCATTTTCTCAGGTTATTGAAGCCATTTCCTACTTAGAAACTTCAAGAGCCACAGGAAAAGTGGTCGTTTATCCCATACCCTAA
Predicted protein sequences of Glyma.19g008300
>Glyma.19g008300.1.p sequence-type=predicted peptide transcript=Glyma.19g008300.1 locus=Glyma.19g008300 ID=Glyma.19g008300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEDASIIPTHTKAWYYSEHGSPGDVLKLDPNWPLPQQLKDDQVLIKVIAASINPVDYKRMHGEFKDTDPHLPIVPGYDVAGIVVKVGGEVKKFKVGDEVYGDINEQGLSNLKIHGTLSEYTIAEERLLAHKPSNLSFIEAASIPLALETANEGFEHAHFSAGKSILVLGGAGGVGNYVIQLAKQVYKASKIAATASTGKLELLRELGVDLPIDYTKENFEDLPEKYDLVYDVVGQGDRAFKAVKEDGKVVTIVPPGHPPAMFFVLTSKGSILENLRPYFESGKLKPILDAKTPVPFSQVIEAISYLETSRATGKVVVYPIP*

>Glyma.19g008300.2.p sequence-type=predicted peptide transcript=Glyma.19g008300.2 locus=Glyma.19g008300 ID=Glyma.19g008300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MHGEFKDTDPHLPIVPGYDVAGIVVKVGGEVKKFKVGDEVYGDINEQGLSNLKIHGTLSEYTIAEERLLAHKPSNLSFIEAASIPLALETANEGFEHAHFSAGKSILVLGGAGGVGNYVIQLAKQVYKASKIAATASTGKLELLRELGVDLPIDYTKENFEDLPEKYDLVYDVVGQGDRAFKAVKEDGKVVTIVPPGHPPAMFFVLTSKGSILENLRPYFESGKLKPILDAKTPVPFSQVIEAISYLETSRATGKVVVYPIP*






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