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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G14580.1 | AT | polyribonucleotide nucleotidyltransferase, putative | JGI | N/A | IEA |
| GO:0006396 | GO-bp | RNA processing | EnsemblGenomes | N/A | IEA |
| GO:0006396 | GO-bp | RNA processing | JGI | N/A | IEA |
| GO:0006402 | GO-bp | mRNA catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0000175 | GO-mf | 3'-5'-exoribonuclease activity | JGI | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | JGI | N/A | IEA |
| GO:0004654 | GO-mf | polyribonucleotide nucleotidyltransferase activity | EnsemblGenomes | N/A | IEA |
| KOG1067 | KOG | Predicted RNA-binding polyribonucleotide nucleotidyltransferase | JGI | N/A | IEA |
| PTHR11252 | Panther | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE | JGI | N/A | IEA |
| PF00013 | PFAM | KH domain | JGI | N/A | IEA |
| PF00575 | PFAM | S1 RNA binding domain | JGI | N/A | IEA |
| PF01138 | PFAM | 3' exoribonuclease family, domain 1 | JGI | N/A | IEA |
| PF03725 | PFAM | 3' exoribonuclease family, domain 2 | JGI | N/A | IEA |
| PF03726 | PFAM | Polyribonucleotide nucleotidyltransferase, RNA binding domain | JGI | N/A | IEA |
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Glyma.19g005800 not represented in the dataset |
Glyma.19g005800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.05g005200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g00280 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g005800.1 sequence-type=CDS polypeptide=Glyma.19g005800.1.p locus=Glyma.19g005800 ID=Glyma.19g005800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAGGAGAACGAACACACTCCTCCGCACCTTGCCGCACTTCCTCACATGGCGCGCCTTCCGCTTCCGCACCTTCGCCACCACCAAGCACCTCGAGACCTTCACGGAGCAATTCGAAATCGGCTCGAGCGTGATCACGCTCGAGACCGGCAAGATCGCTCGCTTCGCCAACGCCGCCGTCGTTTTGGCAATGGAAAACACCAACGTCCTCTCCACCGTCACCGCCTCTAAAGCCAACGACGCCGTTCGCGATTTCTTACCTCTCACCGTGGATTATCAAGAGAAGCAATTCGCGCAAGGCGTGATTCCGACTTCGTTCATGCGGAGGGAAGGTGCTCCGAGAGAGCGTGAGCTCTTGTGTGGTCGAATCATCGACCGGCCAATTCGGCCGTTGTTTCCACCGGGATTTTACCACGAGGTTCAGGTAATGGCGAGTGTTCTTTCTTCCGATGGAAAACAAGATACGGATGTGTTAGCAGCTAATGCAACTTCAGCTGCTCTTATGTTATCAGATATTCCTTGGGGTGGTCCCATTGGAATGGTTCGAATTGGTAGGATATGTGGACAGTTTATAGTAAATCCTACCATGGATGAGCTTAAGTTAAGTGATCTTAACTTGGTGTATGCTTGTACAAAGGACAAAACTTTGATGATTGATGTGCAAGCTCGTGAGATATCTGATAAAGACCTAGAAGCTGGGTTAAGACTGGCTCACCCAGAGGCTGTTAAGTATATTGAACCTCAAATCAGACTTGCTGCTAAAGCTGGCAAATCTAAGAAGGAATACAAATTGTCAATGCTGTCTGACAATACAATGGAGAAAGTTCGTAATATAGCAGAGGCACCAATCGAAGCAGTTTTTACCAATCCTAGCTATGGAAAGTTTGAACGTGGAGAAGCATTAGAAAATATTGCACAAGATGTAAAGAGAGTGCTCGAAGAAGAAGGTGATGAAGAAAGCTTAAAAGTCTTGTCAAAGGCAGTAGATACTGTGAGGAAGAAGGTGGTTCGTAAAAGAATTATTGCAGAAGGATACAGACTTGATGGAAGACAGCTCGATGAAGTAAGGCCTTTGTATTGTGAAGCTGGATATGTTTCCATGTTACATGGATCTGCACTATTTTCCCGTGGAGAGACACAGGTCTTATGTACAGTAACACTTGGAGCACCTACAGATGCTCAACGCTTGGAATCTGTAGTCGGTCCTCCAACAAAGCGATTTATGCTTCACTATAGTTTTCCTCCCTTCTGCATAAATGAAGTTGGTAAACGTGGTGGTCTGAACAGGCGTGAAGTTGGTCATGGAACTCTTGCTGAGAAAGCTCTTCTTGCTGTTTTGCCCCCTGAAGATGATTTTCCATATACTGTTCGTGTCAACTCTGAAGTCATGGCTTCAGATGGTTCGACATCAATGGCAACTGTATGTGGAGGTAGTATGGCTTTGATGGATGCTGGCATTCCTGTACGTGAACATGTTGCTGGGGTTTCTGTGGGTCTTGTCAGTGAGCTTGATCCATCCACTGGCGAAATAGCAGATTATCGTATCTTGACTGATATTCTGGGCTTGGAAGACCATCTGGGTGACATAGACTTCAAGATTGCTGGAACTCGAAAAGGAGTTACGGCTATTCAATTGGATATAAAACCAGCAGGGATTCCTCTGGATATCGTATGTGAATGTTTAGAACCTGCACACAAAGCTCGTCTTCAAATTCTTGATCACATGGAACAAGAAATCAATGTACCTCGTAACAAGAATGACAGTACTTCTCCACGACTAGCCACCTTAAAGTACAACAATGATGCTCTTCGTCGCCTAATTGGACCAATGGGTGCTCTAAAGAGAAAAATGGAAGAGGAAACAGGTGCACGGATGTCTGTAGGTGATGGAACACTTACAATAGTTGCTAAGAATCAATCTGTAATGGACAAAATACTAGAAAAGATTGATTTTATTGTGGGCCGTCAAATTGAAGTTGGAGGCATCTACACAGGTATTGTCACCACTATAAAAGAGTATGGAGCTTTTGTGGAGTTTAATGGTGGCCAGCAGGGCCTACTCCACATTTCTGAGTTGTCACATGAACCGGTTTCCCAAGTTTCAGAGGTTGTCTCTGTTGGCCAGAAGCTGTCTTTGATGTGCATAGGCCAAGATGTTCATGGTAACATTAAATTATCCCTTAAAGCAACTTCGCCTCGTCCTGGAGGATTGGAGACTAATGATGCAGTTGAAGAATCTGTTGCATCTGCAAAAGAAACAGCCAACATTTGGGCACCAGTTGGGAATGTGTCTAGTACACAAGAACAAAATTCTGCTCATGAGTTGTCTTTAGGCAATCTTGAGTTGGGTAATGCAAAATCCCAAACCTCCCAAGTTCCGGTAATTTTAATACGCAGTGCTGCAGAGTGCGATGAAGAGGAGAAATCATCCAGCTTGAATCTGTCTTCAAAAAGTCCTCATGTAGATAATGGGGTACAATTGGATCGCAAGTCAAAATCTCGATCTCAAAATGCAAAATCTCGTAGATCTCAAGATGTTGATGCTCCATCTTCTCATTCAGGTCCCTTGCCTTATAAGAAGTCGAAACCTTCAATGCAGAAAGAGTCAAAATCTGATATTCAAAAGCCAAAAGGGGATGCGCAGGAACCTAAAGATAAGGTAACTGCAGAAGATCTGAAACTCGGAACTCAAGTAACTGCCAAAGTCTCTCAAATTCGTGCACATGGGTTAGTGTTGGACTTGGGTGGAGGACTTCGAGGAATGTACCGGTTTGAGGAAAATAACAAAAGGGACTTTAAAATAGGCGATGAGATGCGAGTTGTGTGCTCAAGCTTTTCTAGCAAGGGAATTCCAGTATTGTCTTTTGTGAATGATCAATAA
>Glyma.19g005800.1.p sequence-type=predicted peptide transcript=Glyma.19g005800.1 locus=Glyma.19g005800 ID=Glyma.19g005800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MRRTNTLLRTLPHFLTWRAFRFRTFATTKHLETFTEQFEIGSSVITLETGKIARFANAAVVLAMENTNVLSTVTASKANDAVRDFLPLTVDYQEKQFAQGVIPTSFMRREGAPRERELLCGRIIDRPIRPLFPPGFYHEVQVMASVLSSDGKQDTDVLAANATSAALMLSDIPWGGPIGMVRIGRICGQFIVNPTMDELKLSDLNLVYACTKDKTLMIDVQAREISDKDLEAGLRLAHPEAVKYIEPQIRLAAKAGKSKKEYKLSMLSDNTMEKVRNIAEAPIEAVFTNPSYGKFERGEALENIAQDVKRVLEEEGDEESLKVLSKAVDTVRKKVVRKRIIAEGYRLDGRQLDEVRPLYCEAGYVSMLHGSALFSRGETQVLCTVTLGAPTDAQRLESVVGPPTKRFMLHYSFPPFCINEVGKRGGLNRREVGHGTLAEKALLAVLPPEDDFPYTVRVNSEVMASDGSTSMATVCGGSMALMDAGIPVREHVAGVSVGLVSELDPSTGEIADYRILTDILGLEDHLGDIDFKIAGTRKGVTAIQLDIKPAGIPLDIVCECLEPAHKARLQILDHMEQEINVPRNKNDSTSPRLATLKYNNDALRRLIGPMGALKRKMEEETGARMSVGDGTLTIVAKNQSVMDKILEKIDFIVGRQIEVGGIYTGIVTTIKEYGAFVEFNGGQQGLLHISELSHEPVSQVSEVVSVGQKLSLMCIGQDVHGNIKLSLKATSPRPGGLETNDAVEESVASAKETANIWAPVGNVSSTQEQNSAHELSLGNLELGNAKSQTSQVPVILIRSAAECDEEEKSSSLNLSSKSPHVDNGVQLDRKSKSRSQNAKSRRSQDVDAPSSHSGPLPYKKSKPSMQKESKSDIQKPKGDAQEPKDKVTAEDLKLGTQVTAKVSQIRAHGLVLDLGGGLRGMYRFEENNKRDFKIGDEMRVVCSSFSSKGIPVLSFVNDQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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