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Report for Sequence Feature Glyma.19g005300

Feature Type:gene_model
Chromosome:Gm19
Start:483800
stop:486940
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g005300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11010.2AT Pre-mRNA cleavage complex II protein family JGI N/AIEA
GO:0000448GO-bp cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) EnsemblGenomesN/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0051731GO-mf polynucleotide 5'-hydroxyl-kinase activity EnsemblGenomesN/AIEA
PTHR12755Panther CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P JGI N/AIEA
PF06807PFAM Pre-mRNA cleavage complex II protein Clp1 JGI N/AIEA

Expression Patterns of Glyma.19g005300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g005300 not represented in the dataset
Glyma.19g005300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g005300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g00341 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g005300
>Glyma.19g005300.1 sequence-type=CDS polypeptide=Glyma.19g005300.1.p locus=Glyma.19g005300 ID=Glyma.19g005300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGTGCTTGTTCAGAAGGATGCACGTCTCCTACGTGATTTACGAATAATGGCTTATTTCAAACAGTGCTTTTCTAGTGATTCAAATATTTCTACAATCAAGGAACTTGCACATGCCTTGGCCTCTCACTGTCCTTATGAAGTTCCAATTGCAAGCATAAAGATTCGACATCTTCATTGTGAGGTCCCAAGCTCTGAAATATTCTTCAGTTTGAATGCTACCATTGTTGGCTTAGCCGTTGATTCTGAAGGACCTGAAAATTTACCTTCGTGTCTTGGTCTTGGGATTGTGAGGGGAATTGACATAGTCAAAGCTATGCTTTATGTCATTACTCCCGTGCCACATAATTCTCTCGAAAAAGTCAACGTGTTGCTACAGGGTTATATCCAAATTCCATCTTGTTTATTGCAGGTTCAAGGATGCATCTCACCTTACATGTCAGCAAATACTTTGACTTTGACTACAAACTAG
Predicted protein sequences of Glyma.19g005300
>Glyma.19g005300.1.p sequence-type=predicted peptide transcript=Glyma.19g005300.1 locus=Glyma.19g005300 ID=Glyma.19g005300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGVLVQKDARLLRDLRIMAYFKQCFSSDSNISTIKELAHALASHCPYEVPIASIKIRHLHCEVPSSEIFFSLNATIVGLAVDSEGPENLPSCLGLGIVRGIDIVKAMLYVITPVPHNSLEKVNVLLQGYIQIPSCLLQVQGCISPYMSANTLTLTTN*






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