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Report for Sequence Feature Glyma.19g004200

Feature Type:gene_model
Chromosome:Gm19
Start:338885
stop:354769
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g004200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53720.1AT cyclophilin 59 JGI N/AIEA
GO:0000413GO-bp protein peptidyl-prolyl isomerization EnsemblGenomesN/AIEA
GO:0006457GO-bp protein folding JGI N/AIEA
GO:1901407GO-bp regulation of phosphorylation of RNA polymerase II C-terminal domain EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003755GO-mf peptidyl-prolyl cis-trans isomerase activity EnsemblGenomesN/AIEA
GO:0003755GO-mf peptidyl-prolyl cis-trans isomerase activity JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016853GO-mf isomerase activity EnsemblGenomesN/AIEA
KOG0415 KOG Predicted peptidyl prolyl cis-trans isomerase JGI N/AIEA
PTHR11071Panther PEPTIDYL-PROLYL CIS-TRANS ISOMERASE JGI N/AIEA
PTHR11071:SF25Panther JGI N/AIEA
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI N/AIEA
PF00098PFAM Zinc knuckle JGI N/AIEA
PF00160PFAM Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JGI N/AIEA

Proteins Associated with Glyma.19g004200
LocusGene SymbolProtein Name
CYP59 peptidyl-prolyl cis-trans isomerase CYP59

Expression Patterns of Glyma.19g004200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g004200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g00460 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g004200
>Glyma.19g004200.1 sequence-type=CDS polypeptide=Glyma.19g004200.1.p locus=Glyma.19g004200 ID=Glyma.19g004200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGGTGCTGATTGTGACGAGCTTAGGGGACCTTGTCGTCGATTTGCACACCAACAAATGCCCCTTGACCTGCAAAAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAATGGGTGTCTATTTCACACTGTTCAAAAGGATTTTACTGCCCAAACTGGTGATCCAACTGGCACGGGAACTGGTGGTGATTCTGTTTACAAGTTTCTTTATGGTGATCAAGCTCGGTTTTTCAGTGATGAAATTCATATTGATTTGAAGCATTCCAAGACTGGAACAGTTGCCATGGCAAGTGCTGGAGAGAATCTGAATGCTTCACAGTTCTATATCACTCTGCGTGATGACCTTGATTACCTTGACGGAAAACACACGGTTTTTGGCGAGGTAGCTGAAGGATTTGAGACTTTAACGAGAATAAATGAGGCTTATGTGGATGAGAAGGGAAGACCCTATAAAAATATAAGAATCAAGCACACATACATCCTGGAGGATCCTTATGAAGATCCTTCTCAACTATCTGTGTTCATTCCTGATGCTTCTCCAGAAGGAAAACCTAAAGATGAGGTTGATGATGAAGTGCGACTTGAAGATGATTGGGTTCCCATGGATGAACAATTAAATCCGGCAGAACTTGAGGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTATTGGGGACATTCCTGATGCTGAGATTAAGCCTCCAGACAATGTATTGTTTGTCTGTAAATTGAACCCAGTTACTGAGGATGAGGATTTGCATACAATATTTTCACGCTTTGGAACTGTATCAATGGCTGAAATCATTCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAACGGTCATGTGAGCAGGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACACGTGGATTTTAGTCAAAGTGTGTCAAAACTGTGGTCACAATACAGGCGGAAAGACCAAAAGGGTAAAGGTGGTGGTTGTTTCAAATGTGGTTCTACAGATCATATTGCTAAGGATTGCACTGGAGATTCTACAATGAAACAACCACAAGCAAAATACATCTTAAAGGATGATAATGCCCAACGTGGTGGAGATAATGCGAGATATGAAATGGTTTTTGATGGAGATAACTCACAAAGTCCAAGGCGAGATATAAAACACCAATGGCATGATGGTGACCTGGTTGAAAGAAAAGATCATAGAAGTCGTAGAGAACAGGATATGGTAGACTCAAACAACAGAGATAGGTATGGTGATAGAAGCAGAGGACATGGGGGAAATGGAGACAACAAAGCACGGTCTGAAAGAGGTGCAAGAGATTTGGGTTCCCATGCTGACACGAAAGACAGAGATAGACACATGGGAAGACATGGAGATGATGATTACAAGCGGAAAGATGAGTGTGACTCCAGAAAAAGAGATGAAGACGATGGCTACAAGAGGAAAGATGAGCAAGACTCAAGAAAAAGAGATGAAGACGATGGCTATAGAGAAAGACGAACTAGTCGAGATGATAGGAGAAACATGGATTCTAGCCATTTGGAGAGAAGGAATGACAGAGATTATAGGAAGAGACCTGAAGACAGTGGAAAGCAAGAAATGAAGATGGATTCTGGACGAAGAAAAGGAAGTCCAGTTGATGAAGATTACAAGAATGGAAGGGATGATGAAGATTACAAACATAGAAGGGAAGAACGTGGGCATAAAAGACAAGATACTAAAGCTGATGATGATTACAAGCGTAGAAGGGAGGATGTGGATTACAAACGCAGAAGGGAGGACGGAGATTACAGACATAGAAGGCAAGAACGTGGACATAAAAGACAAGATATTGTATCTGATGATTATCCTCATAGGAGGCATCATGGTGATAGGAGATGA
Predicted protein sequences of Glyma.19g004200
>Glyma.19g004200.1.p sequence-type=predicted peptide transcript=Glyma.19g004200.1 locus=Glyma.19g004200 ID=Glyma.19g004200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSVLIVTSLGDLVVDLHTNKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTGGDSVYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDEKGRPYKNIRIKHTYILEDPYEDPSQLSVFIPDASPEGKPKDEVDDEVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSMAEIIRDHKTGDSLCYAFIEFEDKRSCEQAYFKMDNALIDDRRIHVDFSQSVSKLWSQYRRKDQKGKGGGCFKCGSTDHIAKDCTGDSTMKQPQAKYILKDDNAQRGGDNARYEMVFDGDNSQSPRRDIKHQWHDGDLVERKDHRSRREQDMVDSNNRDRYGDRSRGHGGNGDNKARSERGARDLGSHADTKDRDRHMGRHGDDDYKRKDECDSRKRDEDDGYKRKDEQDSRKRDEDDGYRERRTSRDDRRNMDSSHLERRNDRDYRKRPEDSGKQEMKMDSGRRKGSPVDEDYKNGRDDEDYKHRREERGHKRQDTKADDDYKRRREDVDYKRRREDGDYRHRRQERGHKRQDIVSDDYPHRRHHGDRR*






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