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Report for Sequence Feature Glyma.19g003200

Feature Type:gene_model
Chromosome:Gm19
Start:210453
stop:218637
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19g003200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G27530.1AT golgin candidate 6 JGI N/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0006886GO-bp intracellular protein transport JGI N/AIEA
GO:0006888GO-bp ER to Golgi vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0045056GO-bp transcytosis EnsemblGenomesN/AIEA
GO:0048211GO-bp Golgi vesicle docking EnsemblGenomesN/AIEA
GO:0048280GO-bp vesicle fusion with Golgi apparatus EnsemblGenomesN/AIEA
GO:0048280GO-bp vesicle fusion with Golgi apparatus JGI N/AIEA
GO:0061025GO-bp membrane fusion EnsemblGenomesN/AIEA
GO:0000139GO-cc Golgi membrane EnsemblGenomesN/AIEA
GO:0000139GO-cc Golgi membrane JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0005795GO-cc Golgi stack EnsemblGenomesN/AIEA
GO:0012507GO-cc ER to Golgi transport vesicle membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
GO:0008565GO-mf protein transporter activity EnsemblGenomesN/AIEA
GO:0008565GO-mf protein transporter activity JGI N/AIEA
KOG0946 KOG ER-Golgi vesicle-tethering protein p115 JGI N/AIEA
PTHR10013Panther GENERAL VESICULAR TRANSPORT FACTOR P115 JGI N/AIEA
PF04869PFAM Uso1 / p115 like vesicle tethering protein, head region JGI N/AIEA
PF04871PFAM Uso1 / p115 like vesicle tethering protein, C terminal region JGI N/AIEA

Expression Patterns of Glyma.19g003200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.19g003200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma19g00610 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19g003200
>Glyma.19g003200.1 sequence-type=CDS polypeptide=Glyma.19g003200.1.p locus=Glyma.19g003200 ID=Glyma.19g003200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGATGGATTTGATGTCTGGTTATAAGGGGGTTGTTGGGCTTCTTGTTGGCAACGAGAATTCCTCAAATGAAGATAGATATGTTGAGCGCTTGCTTGACCGGATAAGCAATGGTAAACTACCAGAGGACAGGAGAAATGCTATTACTGAGCTTCAGGCTGTTGTCTCAGAAAGTCAAGCTTTCCAGTTAGCATTTGGGGCAATGGGCTTTCCTATAATGCTAAGTGTCTTGAAGGAAGAACGTGATGATGTTGAGATGGTTCGTGGTGTCCTGGAAACACTTGTAAGTGCATTGACTCCTATTAATCATTCAAAAGGGGCAAGTAATGAAGTTCATCCAGCTTTGATGAACACTGATTTACTTTCTAGAGAAGCAGATTGTATCTCTCTTCTCCTAAGTTTGTTGGAAGAGGATGATTTCTATGTACGATATTATACTCTGCAACTATTGACTGCCCTTCTCACCAATTCTCCACAGAGGTTACAGGAAGCAATATTGACTATCCCTCGTGGTATAACTCGACTAATGGACATGCTTATGGATCGTGAGGTAATAAGGAATGAGGCATTATTGCTTCTTACTCATCTGACCCGTGAAGCTGAGGAGATTCAAAAAATTGTCGTCTTTGAAGGTGCATTTGAGAAGATTTTCAGTATCATAAGAGAGGAGGGAAATTCAGATGGTGGTGTTGTGGTACAGGACTGCCTTGAACTGTTGAACAATTTGCTTCGTAGCAATGCATCCAATCAGGTACTACTAAGAGAGACTGTAGGACTTGACTCATTGATATTGATTTTGAAGCTGAGAGGAAGTAGTTTCACTTTTAATCAACAAAAGACAATCAATCTACTCAGTGCATTAGAAACCATTAAATTGTTACTAAAGGGAGGTTCTGAGTCTGATCCTGGGAAAGATATGAATAAACAGACAAATAAGACTACTCTGGTTCAGAAAAAGATATTGGACCATTTGTTAATATTAGGGGTTGAAAGCCAATGGGTACCTGTTCCTGTTCGCTGTGCGGCAATGCGATGCATTGGTGATTTGATTGCTGGAGATTCAAAGAATCGTGATCTTCTTGCTAGCAAAGTTCTTGGAGAGGAGCCACACGTTGAACCTGCTCTGAACTCTATACTTAGAATCCTTTTGAGAACTTCTAGCATGCAAGAGTTCATTGCTGCTGATTATATTTTCAAAAGCTTTTGTGAGAAAAATGCTGATGGCCAATCAATGCTGGCGTCTACGCTAATTCCACAGCCATATTCCATGAATCATGCATTCCTCGAGGAGGATGTCAATATGTCTTTTGGCAGCATGCTATTACACAGTCTTACTTTGGGTGAAAATGGTGATCTTGAGACTTGTTGCAGAGCTGCTAGTGTTCTATCTCATATGTTGAAGGACCATCTCCAATGCAAGGAAAGGGTTTTAAGAATTGAAATTGAGGCAGCACCCATGCAATCTTTAGGAGCTCCAGAGCCACTAATGCATCGAATGGTGAAATATTTGGCTGTTGCTTCTTCCATGAAATTCCATGATGGAAAGTCTAGTACATCAGGAAACTCTTATGTTCAGGCCATTATCTTGAAATTACTGATTACCTGGCTAGCAGATTGCCCCAGTGCAGTGCACTGCTTCCTAGATGCTCGCCCCCACCTTACTTATCTTCTTGAGCTGGTATCAAATTCTTCTGAAACAGTGTGTATAAGGGGTTTTGCGGCAGTTGTCTTGGGTGAATGTGTGATCTATAACAAATCCACTGACCGTGGAAAAGATGCATTTGCCATTGTTGACACAATAAGTCAGAAAATTGGGCTTAGTTCATACTTTTTAAAATTTGATGAGATGCAGAAAAGTTCCATTTTTTCTAGTTTGGAGTCATCCCTGACCCACAGATCATTCGCTAGATCTTCAGCAGCTAGCATGGCAGATATAGAAGATGTAGATGGGAATGATTTGTCAGAAAAGAAAAATCTGGACCATCCAATTCTATCTTCAATCTTGGATTCTAACTTCATGAACCTTGTCAAAAGTCTAGAGGCAGATATTAGAGAACAGATTGTGGAGGTTTATAGCCGTCCAAAAATGAAGGTGGCAGTAGTGCCAGCAGAATTAGAGCAGAGGAGTGGTGAAAGTGATGCTGAGTATATAAAGCGGCTGAAGGTTTTTGTTGAGAAACAGTGCTCTGAGATACAGGATCTTGTTCTTCGAAATGCTTCTATGGCTGAGGACCTGGCTAAGACAGGTAGTACTTTGCAGCCTGAGCAAAGAGTGAGTGGGGGCTCAGATAGAGTCCCAATTGAGACACTGCATAGAGATCTCCAAGAAGCATCTCAAAGATTGGAGATGCTTAAGGCAGAAAAGGCTAAAGTTGAATCTGAGGCGATAATGTATCGGAATTTAGCTGGAAAGACAGAAGCTGATCTAAGGAGTCTGTCTGATGCCTACAATAGTCTGGAGCAATCTAACTTGCTACTGGAGAATGAGGTGAAAGCACTGAAGAGAGAAGGGCACTCAACATTCCCAGATGTGGATGCAATAAAAGCTGAAGCAAGGGAAGAAGCACAGAAGGAGAGTGAGGGTGAGCTGAATGATCTGCTTGTTTGCCTTGGGCAAGAACAAAGCAAGGTAGAAAGACTTAGTGCTAGATTGTTGGAGTTGGGAGAGGATGTTGACATACTGCTTGAAGGCATTGGTGATGATGCTGGGGCTGCTGAAGATGGTGAAGATGAGGAAGATGATGAATAA
Predicted protein sequences of Glyma.19g003200
>Glyma.19g003200.1.p sequence-type=predicted peptide transcript=Glyma.19g003200.1 locus=Glyma.19g003200 ID=Glyma.19g003200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKMDLMSGYKGVVGLLVGNENSSNEDRYVERLLDRISNGKLPEDRRNAITELQAVVSESQAFQLAFGAMGFPIMLSVLKEERDDVEMVRGVLETLVSALTPINHSKGASNEVHPALMNTDLLSREADCISLLLSLLEEDDFYVRYYTLQLLTALLTNSPQRLQEAILTIPRGITRLMDMLMDREVIRNEALLLLTHLTREAEEIQKIVVFEGAFEKIFSIIREEGNSDGGVVVQDCLELLNNLLRSNASNQVLLRETVGLDSLILILKLRGSSFTFNQQKTINLLSALETIKLLLKGGSESDPGKDMNKQTNKTTLVQKKILDHLLILGVESQWVPVPVRCAAMRCIGDLIAGDSKNRDLLASKVLGEEPHVEPALNSILRILLRTSSMQEFIAADYIFKSFCEKNADGQSMLASTLIPQPYSMNHAFLEEDVNMSFGSMLLHSLTLGENGDLETCCRAASVLSHMLKDHLQCKERVLRIEIEAAPMQSLGAPEPLMHRMVKYLAVASSMKFHDGKSSTSGNSYVQAIILKLLITWLADCPSAVHCFLDARPHLTYLLELVSNSSETVCIRGFAAVVLGECVIYNKSTDRGKDAFAIVDTISQKIGLSSYFLKFDEMQKSSIFSSLESSLTHRSFARSSAASMADIEDVDGNDLSEKKNLDHPILSSILDSNFMNLVKSLEADIREQIVEVYSRPKMKVAVVPAELEQRSGESDAEYIKRLKVFVEKQCSEIQDLVLRNASMAEDLAKTGSTLQPEQRVSGGSDRVPIETLHRDLQEASQRLEMLKAEKAKVESEAIMYRNLAGKTEADLRSLSDAYNSLEQSNLLLENEVKALKREGHSTFPDVDAIKAEAREEAQKESEGELNDLLVCLGQEQSKVERLSARLLELGEDVDILLEGIGDDAGAAEDGEDEEDDE*






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