SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55270.1 | AT | Galactose oxidase/kelch repeat superfamily protein | JGI | N/A | IEA |
| GO:0016567 | GO-bp | protein ubiquitination | EnsemblGenomes | N/A | IEA |
| GO:0031463 | GO-cc | Cul3-RING ubiquitin ligase complex | EnsemblGenomes | N/A | IEA |
| GO:0004842 | GO-mf | ubiquitin-protein transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| PTHR24412 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PTHR24412:SF247 | Panther | JGI | N/A | IEA | |
| PF01344 | PFAM | Kelch motif | JGI | N/A | IEA |
|
|
|
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma19g00720 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.19g002200.1 sequence-type=CDS polypeptide=Glyma.19g002200.1.p locus=Glyma.19g002200 ID=Glyma.19g002200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGACAGAGTTATTCAACCTCCATTGGTTGATACAACTGCGTGTTTATGCAGAGTAGATACAGGTCTAAAAACCGTTGCTGGAGCAAAGAACAATGTCCCTGGAACAAAGTTCTGTCTTCAACCTGACATTAACCATCCATTCACCCAACTAGAAACAAAGTCGGCACATGGTGACAGAAGCCGTAATCAATCCCCTCTACTTCCAGGACTCCCTGATGATCTGGCTATTGCTTGGCTAATCCAAAGTCTTGGAGTCGCAGAAGAGTGGATATATGTCATTAAGAGGGACCAAGATGGAAAAATATCATGGCATGCCTTTGATCCTGTGTACCATCTATGGCAGCCCCTGCCACCTGTTCCTAAGGAATATTCTGGAGCTCTTGGTTTTGGCTGTGCTGTTCTCAATGGCTGTCACCTGTACCTGTTTGGAGGGAAGGACCCACTAAAGGGATCCATGAGACGTGTCATATTTTATAGTGCTAGGACAAATAAATGGCACTGTGCCCCAGATATGCTTCGTAGGCGGCACTTCTTTAGCTCCTGTGTCATAAACAATTGTCTGTATGTGGCTGGTGGGGAGAATGAGGGTGTGCACCGGTCCTTGAGATCAGCTGAAGTGTATGATCCCAACAAGAATAGATGGTCATTTATTTCAGATATGAGCACTGCAATGGTGCCTTTCATAGGAGTTGTCTATGATGGGAAGTGGTTCCTGAAGGGACTCGGTTCTCATCGGCAGGTTCTGAGTGAGGTCTACCAGCCAGAGAACGATAACCGGTACCCTATTTATGATGGAATGGTTTCTGGCTGGAGGAACCCTAGCTGTACCCTAAATGAAAAGCTCTATGCCTTAGACTGCAAGGACGGCTGCAAGATTCGGGTTTATGATGAGGTTGCTGATTCATGGAGCAAGCATATTGACAGTAAAATGCATTCGGGGAGCTCACGGGCTTTGGAGGATGCTGCTCTTGTCCCCCTGAATGGGAAACTCTGTATCATCCGTAATAATATGAGCATTTCTCTGGTTGATGTTTCAAAACTTGAAGATTTGAAAGGATCATCTCCTGAACAGTTATGGGAAACTATTGCTGGGAAAGGACAGTTCAAGACCTTGGTCACAAATCGGTGGTCTAGTCTTGCTGGGAGAAACCGACTCAAAAGTCACATAGTTCACTGTCAGGTTCTTCAAATTTAG
>Glyma.19g002200.1.p sequence-type=predicted peptide transcript=Glyma.19g002200.1 locus=Glyma.19g002200 ID=Glyma.19g002200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDRVIQPPLVDTTACLCRVDTGLKTVAGAKNNVPGTKFCLQPDINHPFTQLETKSAHGDRSRNQSPLLPGLPDDLAIAWLIQSLGVAEEWIYVIKRDQDGKISWHAFDPVYHLWQPLPPVPKEYSGALGFGCAVLNGCHLYLFGGKDPLKGSMRRVIFYSARTNKWHCAPDMLRRRHFFSSCVINNCLYVAGGENEGVHRSLRSAEVYDPNKNRWSFISDMSTAMVPFIGVVYDGKWFLKGLGSHRQVLSEVYQPENDNRYPIYDGMVSGWRNPSCTLNEKLYALDCKDGCKIRVYDEVADSWSKHIDSKMHSGSSRALEDAALVPLNGKLCIIRNNMSISLVDVSKLEDLKGSSPEQLWETIAGKGQFKTLVTNRWSSLAGRNRLKSHIVHCQVLQI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
