Glyma.19g001900

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Report for Sequence Feature Glyma.19g001900

Feature Type:	gene_model
Chromosome:	Gm19
Start:	133430
stop:	136403
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.19g001900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G66840.1	AT	Plant protein of unknown function (DUF827)	JGI	N/A	IEA
GO:0009903	GO-bp	chloroplast avoidance movement	EnsemblGenomes	N/A	IEA
GO:0009904	GO-bp	chloroplast accumulation movement	EnsemblGenomes	N/A	IEA
GO:0005829	GO-cc	cytosol	EnsemblGenomes	N/A	IEA
PF05701	PFAM	Weak chloroplast movement under blue light	JGI	N/A	IEA

Expression Patterns of Glyma.19g001900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.19g001900 not represented in the dataset	Glyma.19g001900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.19g001900

Paralog	Evidence	Comments
Glyma.05g002000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19g001900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma19g00746	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.19g001900

Limit To All Plant Sequences

>Glyma.19g001900.2 sequence-type=transcript locus=Glyma.19g001900 ID=Glyma.19g001900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAATCTGAAAGGAATAACAGTAGAATGTGTCCAATAGCAGCCAGTCATGTGGACCTCATCACCCTCTTCCTATTCTCAACCCTTTGAGCTTATTACAATTCTCAGCCACAAAAGTTCTCCCTCCTAACATGTTTGATTTTTGAGCTAACCAGTCTCCAACAACAATCTCACTCAGCTGGAATACATAGGATATGGATGGCTCAGCCTCAAAGCCTGGTAACACAACAAGAGGAATTGGTTTGGTTAAAGCCGGTGTTAACTTATGTGGTAACAGGAATATTGCAGATGTTAATAGTCCTTCGCTGAAAAAAGATTTCTCAACGAAGCACTCTTCAAAAGCAAAAGAACTCCACAGAGCAAGCAATGATATTGTTCGGTACGAAGAGACCAAATGGGCAGCAGAATCTGCAAAAGCTCAAGCAGAAGCTGAGCTTTCCAATGCTAAACAGACAGTGAAAGATCTTTTCTCTATGATTGGGGAATCTATCTACAAGGCAAAAGCCGAAATGCGAGACATGGCACCACTAAAGAAGTATGTGAAACCGAGCAAGGATGATAATGAGTATTCACAAGTTATGAGAGAATTGGAACATGCTAAGCGGGAATTGTTCCAACTTAAGCTTGATGTGGGTTCTGTTTTGGAGGAGAAACTGCGAGCGGAGAAGGAAATCGAAGCATCGAGATCCACCATGCTGTCCTTCTCAAGAGTAGCACAAAAACTGAGGAAGGAGATTGAGGAAGCCAGTGAAGAACAAGTGGTGGTTGAATTGGCCAGAATGGACGCTTTGAATGAACTGAGAGACATTGAAACTGTTGAAAACACAAGGAACAAGTTGAAAGAGGCCATTGAAGAGATAGATGAGACAAAAGAGCTCGAAATGAAATTGGCCACGACATTGTCTGATATTGATATGTTGAAGAATGAGTTGAAGTTTGTTAAGAAAACGGGGAAAAGGGTACATGAAAGAGGTGGTGAGAGCATGGAGCATATAGAAGAAGATCAATCAAGAGATGTTGGTGTGTTAGAGGCTACAAAAGAAGAAATAGAAGCAGCAAAGAAAGACTTGGCTTCCATTAGAGAACAAGGTTTTAAGTTTATGGCCTCTATGGATGTCACAAGAAATGAGCTGAAGCATGTGAGTGCAGCCACGAATCATTTAAAGAACACGGAATCGAAAATTGGTGCAAAAGTTCGAAACCTCAGTTACAAGCTCTTGAGAGCAAAATCTAAATTAGAAGCCGTGTCTGCTGCAGAGGAAAAGGCCAAATCAATAGTCAGTAACTTGTCAAAAACTCTTGATAAGCTCAAGTCCGAAACAGAAGCAGCAAAAAAAGAAAAAGAGCTTATAATAAATGGAGAGGTTGCAGGCACCAAAGAAGAGATTAAAAAGGCCTTGTTGGAGATAAAGGGGAGTGAGGAAAGATTTCAAGGTGCCATGCAGGAGCTAGAAGCAGTGAAATCATCAGAAGCTTTAGCCTTGGAGAAGCTCAAGATTCTTACGGAGAATGCCATGAAAGAGAGAATTAGTAATTTAACAAAGCCTAGTTCGTTAATTATAATATCAAAGTTTGAATATGAGTATTTGAGAAACCATGCAGGGAAGGCAAATGAAATTGCTGAGAAGAAAGTTGAAGCGGCAAAGGCGTGGGTTGAAGCTGTGAGGGAGAGTGAGAAGGAGATAGTGATGAAGACTAAGATAGCTGCTACTGAGGGAAAAGCAAAAGAAAAGTTGGTTGCAAAGAGAGTTAATAATGAATTGGAGTTGGAGAATTGGTCCAAGTATGGCACTGGCATTTCGAGAAAGAGCATCAAGACGCCTTCTAGAGGAGCTAATTCTAAGTTTCATCAGAAGGCTTCTTCACCTCATCGTCCTGTCAGTCCTTTCATTGTTAAGAAGAAAAACAAGGTAATAACAAATTGGACCAAGATTTTTAGAGGGAAGAAACACCACTAGCTAGCAACACTCTTTCTTTCTTTAAGCTGGGAATTGAAACTGCAAAAAAACATGTACTGCACTGCACAACTTCTTCTTCATTATATTCCCTCATGGCTCATTCCCATGTTTCTTTTCACCTTAGTTATGTCCATAACTGTATCTAAAGTCCCCAAACACACATATAGCAAACCAGTCTTATATATTGCGCCACTTACCCGAAATATTCATTGCGGATTTTGACTTTGTAAATAAAAGTGGCTCTAGTCTCTAGACGAGGATGAA

Coding sequences of Glyma.19g001900

Limit To All Plant Sequences

>Glyma.19g001900.1 sequence-type=CDS polypeptide=Glyma.19g001900.1.p locus=Glyma.19g001900 ID=Glyma.19g001900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGGCTCAGCCTCAAAGCCTGGTAACACAACAAGAGGAATTGGTTTGGTTAAAGCCGGTGTTAACTTATGTGGTAACAGGAATATTGCAGATGTTAATAGTCCTTCGCTGAAAAAAGATTTCTCAACGAAGCACTCTTCAAAAGCAAAAGAACTCCACAGAGCAAGCAATGATATTGTTCGGTACGAAGAGACCAAATGGGCAGCAGAATCTGCAAAAGCTCAAGCAGAAGCTGAGCTTTCCAATGCTAAACAGACAGTGAAAGATCTTTTCTCTATGATTGGGGAATCTATCTACAAGGCAAAAGCCGAAATGCGAGACATGGCACCACTAAAGAAGTATGTGAAACCGAGCAAGGATGATAATGAGTATTCACAAGTTATGAGAGAATTGGAACATGCTAAGCGGGAATTGTTCCAACTTAAGCTTGATGTGGGTTCTGTTTTGGAGGAGAAACTGCGAGCGGAGAAGGAAATCGAAGCATCGAGATCCACCATGCTGTCCTTCTCAAGAGTAGCACAAAAACTGAGGAAGGAGATTGAGGAAGCCAGTGAAGAACAAGTGGTGGTTGAATTGGCCAGAATGGACGCTTTGAATGAACTGAGAGACATTGAAACTGTTGAAAACACAAGGAACAAGTTGAAAGAGGCCATTGAAGAGATAGATGAGACAAAAGAGCTCGAAATGAAATTGGCCACGACATTGTCTGATATTGATATGTTGAAGAATGAGTTGAAGTTTGTTAAGAAAACGGGGAAAAGGGTACATGAAAGAGGTGGTGAGAGCATGGAGCATATAGAAGAAGATCAATCAAGAGATGTTGGTGTGTTAGAGGCTACAAAAGAAGAAATAGAAGCAGCAAAGAAAGACTTGGCTTCCATTAGAGAACAAGGTTTTAAGTTTATGGCCTCTATGGATGTCACAAGAAATGAGCTGAAGCATGTGAGTGCAGCCACGAATCATTTAAAGAACACGGAATCGAAAATTGGTGCAAAAGTTCGAAACCTCAGTTACAAGCTCTTGAGAGCAAAATCTAAATTAGAAGCCGTGTCTGCTGCAGAGGAAAAGGCCAAATCAATAGTCAGTAACTTGTCAAAAACTCTTGATAAGCTCAAGTCCGAAACAGAAGCAGCAAAAAAAGAAAAAGAGCTTATAATAAATGGAGAGGTTGCAGGCACCAAAGAAGAGATTAAAAAGGCCTTGTTGGAGATAAAGGGGAGTGAGGAAAGATTTCAAGGTGCCATGCAGGAGCTAGAAGCAGTGAAATCATCAGAAGCTTTAGCCTTGGAGAAGCTCAAGATTCTTACGGAGAATGCCATGAAAGAGAGAATTAGTAATTTAACAAAGCCTAGTTCGTTAATTATAATATCAAAGTTTGAATATGAGTATTTGAGAAACCATGCAGGGAAGGCAAATGAAATTGCTGAGAAGAAAGTTGAAGCGGCAAAGGCGTGGGTTGAAGCTGTGAGGGAGAGTGAGAAGGAGATAGTGATGAAGACTAAGATAGCTGCTACTGAGGGAAAAGCAAAAGAAAAGTTGGTTGCAAAGAGAGTTAATAATGAATTGGAGTTGGAGAATTGGTCCAAGTATGGCACTGGCATTTCGAGAAAGAGCATCAAGACGCCTTCTAGAGGAGCTAATTCTAAGTTTCATCAGAAGGCTTCTTCACCTCATCGTCCTGTCAGTCCTTTCATTGTTAAGAAGAAAAACAAGGTAATAACAAATTGGACCAAGATTTTTAGAGGGAAGAAACACCACTAG

>Glyma.19g001900.2 sequence-type=CDS polypeptide=Glyma.19g001900.2.p locus=Glyma.19g001900 ID=Glyma.19g001900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATGGCTCAGCCTCAAAGCCTGGTAACACAACAAGAGGAATTGGTTTGGTTAAAGCCGGTGTTAACTTATGTGGTAACAGGAATATTGCAGATGTTAATAGTCCTTCGCTGAAAAAAGATTTCTCAACGAAGCACTCTTCAAAAGCAAAAGAACTCCACAGAGCAAGCAATGATATTGTTCGGTACGAAGAGACCAAATGGGCAGCAGAATCTGCAAAAGCTCAAGCAGAAGCTGAGCTTTCCAATGCTAAACAGACAGTGAAAGATCTTTTCTCTATGATTGGGGAATCTATCTACAAGGCAAAAGCCGAAATGCGAGACATGGCACCACTAAAGAAGTATGTGAAACCGAGCAAGGATGATAATGAGTATTCACAAGTTATGAGAGAATTGGAACATGCTAAGCGGGAATTGTTCCAACTTAAGCTTGATGTGGGTTCTGTTTTGGAGGAGAAACTGCGAGCGGAGAAGGAAATCGAAGCATCGAGATCCACCATGCTGTCCTTCTCAAGAGTAGCACAAAAACTGAGGAAGGAGATTGAGGAAGCCAGTGAAGAACAAGTGGTGGTTGAATTGGCCAGAATGGACGCTTTGAATGAACTGAGAGACATTGAAACTGTTGAAAACACAAGGAACAAGTTGAAAGAGGCCATTGAAGAGATAGATGAGACAAAAGAGCTCGAAATGAAATTGGCCACGACATTGTCTGATATTGATATGTTGAAGAATGAGTTGAAGTTTGTTAAGAAAACGGGGAAAAGGGTACATGAAAGAGGTGGTGAGAGCATGGAGCATATAGAAGAAGATCAATCAAGAGATGTTGGTGTGTTAGAGGCTACAAAAGAAGAAATAGAAGCAGCAAAGAAAGACTTGGCTTCCATTAGAGAACAAGGTTTTAAGTTTATGGCCTCTATGGATGTCACAAGAAATGAGCTGAAGCATGTGAGTGCAGCCACGAATCATTTAAAGAACACGGAATCGAAAATTGGTGCAAAAGTTCGAAACCTCAGTTACAAGCTCTTGAGAGCAAAATCTAAATTAGAAGCCGTGTCTGCTGCAGAGGAAAAGGCCAAATCAATAGTCAGTAACTTGTCAAAAACTCTTGATAAGCTCAAGTCCGAAACAGAAGCAGCAAAAAAAGAAAAAGAGCTTATAATAAATGGAGAGGTTGCAGGCACCAAAGAAGAGATTAAAAAGGCCTTGTTGGAGATAAAGGGGAGTGAGGAAAGATTTCAAGGTGCCATGCAGGAGCTAGAAGCAGTGAAATCATCAGAAGCTTTAGCCTTGGAGAAGCTCAAGATTCTTACGGAGAATGCCATGAAAGAGAGAATTAGTAATTTAACAAAGCCTAGTTCGTTAATTATAATATCAAAGTTTGAATATGAGTATTTGAGAAACCATGCAGGGAAGGCAAATGAAATTGCTGAGAAGAAAGTTGAAGCGGCAAAGGCGTGGGTTGAAGCTGTGAGGGAGAGTGAGAAGGAGATAGTGATGAAGACTAAGATAGCTGCTACTGAGGGAAAAGCAAAAGAAAAGTTGGTTGCAAAGAGAGTTAATAATGAATTGGAGTTGGAGAATTGGTCCAAGTATGGCACTGGCATTTCGAGAAAGAGCATCAAGACGCCTTCTAGAGGAGCTAATTCTAAGTTTCATCAGAAGGCTTCTTCACCTCATCGTCCTGTCAGTCCTTTCATTGTTAAGAAGAAAAACAAGGTAATAACAAATTGGACCAAGATTTTTAGAGGGAAGAAACACCACTAG

Predicted protein sequences of Glyma.19g001900

Limit To All Plant Sequences

>Glyma.19g001900.1.p sequence-type=predicted peptide transcript=Glyma.19g001900.1 locus=Glyma.19g001900 ID=Glyma.19g001900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDGSASKPGNTTRGIGLVKAGVNLCGNRNIADVNSPSLKKDFSTKHSSKAKELHRASNDIVRYEETKWAAESAKAQAEAELSNAKQTVKDLFSMIGESIYKAKAEMRDMAPLKKYVKPSKDDNEYSQVMRELEHAKRELFQLKLDVGSVLEEKLRAEKEIEASRSTMLSFSRVAQKLRKEIEEASEEQVVVELARMDALNELRDIETVENTRNKLKEAIEEIDETKELEMKLATTLSDIDMLKNELKFVKKTGKRVHERGGESMEHIEEDQSRDVGVLEATKEEIEAAKKDLASIREQGFKFMASMDVTRNELKHVSAATNHLKNTESKIGAKVRNLSYKLLRAKSKLEAVSAAEEKAKSIVSNLSKTLDKLKSETEAAKKEKELIINGEVAGTKEEIKKALLEIKGSEERFQGAMQELEAVKSSEALALEKLKILTENAMKERISNLTKPSSLIIISKFEYEYLRNHAGKANEIAEKKVEAAKAWVEAVRESEKEIVMKTKIAATEGKAKEKLVAKRVNNELELENWSKYGTGISRKSIKTPSRGANSKFHQKASSPHRPVSPFIVKKKNKVITNWTKIFRGKKHH*

>Glyma.19g001900.2.p sequence-type=predicted peptide transcript=Glyma.19g001900.2 locus=Glyma.19g001900 ID=Glyma.19g001900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDGSASKPGNTTRGIGLVKAGVNLCGNRNIADVNSPSLKKDFSTKHSSKAKELHRASNDIVRYEETKWAAESAKAQAEAELSNAKQTVKDLFSMIGESIYKAKAEMRDMAPLKKYVKPSKDDNEYSQVMRELEHAKRELFQLKLDVGSVLEEKLRAEKEIEASRSTMLSFSRVAQKLRKEIEEASEEQVVVELARMDALNELRDIETVENTRNKLKEAIEEIDETKELEMKLATTLSDIDMLKNELKFVKKTGKRVHERGGESMEHIEEDQSRDVGVLEATKEEIEAAKKDLASIREQGFKFMASMDVTRNELKHVSAATNHLKNTESKIGAKVRNLSYKLLRAKSKLEAVSAAEEKAKSIVSNLSKTLDKLKSETEAAKKEKELIINGEVAGTKEEIKKALLEIKGSEERFQGAMQELEAVKSSEALALEKLKILTENAMKERISNLTKPSSLIIISKFEYEYLRNHAGKANEIAEKKVEAAKAWVEAVRESEKEIVMKTKIAATEGKAKEKLVAKRVNNELELENWSKYGTGISRKSIKTPSRGANSKFHQKASSPHRPVSPFIVKKKNKVITNWTKIFRGKKHH*

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