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Report for Sequence Feature Glyma.19G226700

Feature Type:gene_model
Chromosome:Gm19
Start:47838450
stop:47844119
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.19G226700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09420.1AT glucose-6-phosphate dehydrogenase 4 JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0006006GO-bp glucose metabolic process EnsemblGenomesN/AIEA
GO:0006006GO-bp glucose metabolic process JGI N/AIEA
GO:0006098GO-bp pentose-phosphate shunt EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0004345GO-mf glucose-6-phosphate dehydrogenase activity EnsemblGenomesN/AIEA
GO:0004345GO-mf glucose-6-phosphate dehydrogenase activity JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0050661GO-mf NADP binding EnsemblGenomesN/AIEA
GO:0050661GO-mf NADP binding JGI N/AIEA
KOG0563 KOG Glucose-6-phosphate 1-dehydrogenase JGI N/AIEA
PTHR23429Panther GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE (G6PD) JGI N/AIEA
PF00479PFAM Glucose-6-phosphate dehydrogenase, NAD binding domain JGI N/AIEA
PF02781PFAM Glucose-6-phosphate dehydrogenase, C-terminal domain JGI N/AIEA
OXIDATIVEPENT-PWYSoyCyc9 pentose phosphate pathway (oxidative branch) I Plant Metabolic Network ISS
PENTOSE-P-PWYSoyCyc9 pentose phosphate pathway Plant Metabolic Network ISS
GN7V-60757SoyCyc9-rxn glucose-6-phosphate dehydrogenase Plant Metabolic Network ISS

Proteins Associated with Glyma.19G226700
LocusGene SymbolProtein Name
G6PDH9 Glucose-6-phosphate dehydrogenase gene 9

Expression Patterns of Glyma.19G226700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.19G226700
ParalogEvidenceComments
Glyma.03g229400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.19G226700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g226700 Wm82.a4.v1ISS As supplied by JGI
Glyma19g41450 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.19G226700
>Glyma.19g226700.1 sequence-type=CDS polypeptide=Glyma.19g226700.1.p locus=Glyma.19g226700 ID=Glyma.19g226700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTGTGTCTTTCTCTTCAACCTCATTCGCATTCCAAAGACCAGCACATCTTTGCTCAAATTCACTCACCGTTGCATCCAACAACTTTGATTCGGTACCAGGTGGACTCGGTCGTCTTGTGCTGAATGTTAGAAGCACCAGCTTGTGTCGAAGGTTTCGTGGCTTGAAACTGTGGGTACTTGAGAGACTCAACTTCCAATTCCAGCCACCAAAGCAACCTAAGAATAGAAATCATCACTTCAAAAATAATTTGGAAAATGAAAAGGGATCGGTTTCTGATTCATCCTCAATTCTTCATGTTCCTGATGATAAGGTCACTCCCATGGAGTCTCCATCTTTGCTGCAGACAGGTTTGTCTGGTGCTCCCATGGATGTTAGCAGAAAGCCCTCTCTTTGTATTGCAGTCATAGGGGCCACTGGCGAGCTGGCAAAGAGGAAGATTTTCCCTGCTTTATTTGCCCTCTACTACAGTGGCTTCCTTCCCGAGAATGTAGGCATTTTTGGTTATTCAAGGAAGGATATAACTGATGAAGACCTGCAATCTATTATAGCTTCAACGTTAACATGCCGAGTTGATCATCAAGAAAACTGTGACGACAAATTAAATGCTTTCCTTAGTAGAACATATTACATTAATGGAGGCTATGACAATAAATATGGGATGTCCATGCTGAATGCTCGAATGGAGCAAATTGAGGGAGGATCCAAAACCAACAGGATATTCTACCTTTCTGTGCCACAAGAAGCACTTTTGGATGTTGCGTCATGTCTTGCAAGCAGTGCTCAGACCCAGAAGGGATGGAATCGCATAATATTTGAGAAGCCATTTGGCTTTGATGCACTTTCTTCCCATAGGCTGACACAATATCTTCTTTCAAACTTTCAGGAAAAGCAAATATATAGAATTGATCATCTACTAGGAAGGAATCTCATTGAAAATCTTACAGTTTTAAGGTTTTCAAATCTAGTTTTTGAGCCACTTTGGAGTCGTACTTATATAGATAATGTACAGGTCATTTTATCAGAGGACTTGGCTGTGCATCCTGGAAGATATTTCAGTGGCTATGGAATTATCCGTGATATTGTACACAGTCATGTGCTCCAAACAATTGCATTGCTTGCCATGGAACCACCAATAAGCCTTGATGGAGAAGATATTCGAAATGAAAAGCTTAAGGTTTTGAGGTCAATTCGCAAATTGGAGCCAAAGGATGTCATTCTCGGCCAATATAAAACAAGTGGTGGAGCCAAAGTTGATGCGTGCCTAAATGGTCTGACACCTACTTATTTTGCTGCTGCACTATACATTGACAATGCACGATGGGATGGCGTGCCATTTCTGATTAAAACAGGCTTGGGGCTCATCAAACACCAAATGGAGATACGGATTCAATTTCGCAATGTACCGGGGAATGTGTACCACGAGTGCATCGGGCATAATATGGACCGCGCTGTAAATGAGCTCATTCTTCGCGATGTTCCTGATGAAGCTATTTTAGTGAGAGTCAACAATAAGGTTCCAGGACTAGGCCTACAACTGGACTCTTCAGAATTAAATTTGCTTTACAAGGACAAGTACAACATGGAGGTGCCGGATTCATACGAGCATCTTCTTCTCGATGTCATTGATGGGGACAGCCATTTGTTTATGAGAAGTGATGAGTTGGCAGCAGCGTGGAATATTCTGACTCCAATTCTGAATGAGATAGACAAAGACAATATGTCAGTGGAGCTTTATGAGATGGGGGGTCGCGGTCCTGTTGGGGCATACTACCTCTGGGCGAAACATGGTGTCCGATGGGTGGAGGATTAG
Predicted protein sequences of Glyma.19G226700
>Glyma.19g226700.1.p sequence-type=predicted peptide transcript=Glyma.19g226700.1 locus=Glyma.19g226700 ID=Glyma.19g226700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSVSFSSTSFAFQRPAHLCSNSLTVASNNFDSVPGGLGRLVLNVRSTSLCRRFRGLKLWVLERLNFQFQPPKQPKNRNHHFKNNLENEKGSVSDSSSILHVPDDKVTPMESPSLLQTGLSGAPMDVSRKPSLCIAVIGATGELAKRKIFPALFALYYSGFLPENVGIFGYSRKDITDEDLQSIIASTLTCRVDHQENCDDKLNAFLSRTYYINGGYDNKYGMSMLNARMEQIEGGSKTNRIFYLSVPQEALLDVASCLASSAQTQKGWNRIIFEKPFGFDALSSHRLTQYLLSNFQEKQIYRIDHLLGRNLIENLTVLRFSNLVFEPLWSRTYIDNVQVILSEDLAVHPGRYFSGYGIIRDIVHSHVLQTIALLAMEPPISLDGEDIRNEKLKVLRSIRKLEPKDVILGQYKTSGGAKVDACLNGLTPTYFAAALYIDNARWDGVPFLIKTGLGLIKHQMEIRIQFRNVPGNVYHECIGHNMDRAVNELILRDVPDEAILVRVNNKVPGLGLQLDSSELNLLYKDKYNMEVPDSYEHLLLDVIDGDSHLFMRSDELAAAWNILTPILNEIDKDNMSVELYEMGGRGPVGAYYLWAKHGVRWVED*






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