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Report for Sequence Feature Glyma.18g302100

Feature Type:gene_model
Chromosome:Gm18
Start:57988925
stop:57992117
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g302100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G39290.1AT phosphatidylglycerolphosphate synthase 1 JGI N/AIEA
GO:0008654GO-bp phospholipid biosynthetic process EnsemblGenomesN/AIEA
GO:0008654GO-bp phospholipid biosynthetic process JGI N/AIEA
GO:0046474GO-bp glycerophospholipid biosynthetic process EnsemblGenomesN/AIEA
GO:0005739GO-cc mitochondrion EnsemblGenomesN/AIEA
GO:0009941GO-cc chloroplast envelope EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0008444GO-mf CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016780GO-mf phosphotransferase activity, for other substituted phosphate groups EnsemblGenomesN/AIEA
GO:0016780GO-mf phosphotransferase activity, for other substituted phosphate groups JGI N/AIEA
KOG1617 KOG CDP-alcohol phosphatidyltransferase/Phosphatidylglycerol-phosphate synthase JGI N/AIEA
PTHR14269Panther CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED JGI N/AIEA
PF01066PFAM CDP-alcohol phosphatidyltransferase JGI N/AIEA
PHOSLIPSYN2-PWYSoyCyc9 superpathway of phospholipid biosynthesis II (plants) Plant Metabolic Network ISS
PWY-5269SoyCyc9 cardiolipin biosynthesis II Plant Metabolic Network ISS
PWY4FS-7SoyCyc9 phosphatidylglycerol biosynthesis I (plastidic) Plant Metabolic Network ISS
PWY4FS-8SoyCyc9 phosphatidylglycerol biosynthesis II (non-plastidic) Plant Metabolic Network ISS
GN7V-43540SoyCyc9-rxn phosphatidylglycerophosphate synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g302100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.18g302100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g54020 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g302100
>Glyma.18g302100.2 sequence-type=transcript locus=Glyma.18g302100 ID=Glyma.18g302100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGAAAGGGGAGGATCTGGACTTGCGCTGACTACGGGAGAAAAAAGAGGAAGAACGGAAGTAGAGGATTGGAAGAAGATAGAAGGGGTAGGTTGGGGTTTTTAAAATAGTAGGAGGTGCAGGATGCAATAAGGGAGGTGCAGATTTCAATTGCCCATCCTTAGAAGGAGAGAAATGCTCGGTAGTTATTTGTCAAAAAGAAATCACAAGGGTTTGGTGTTGGGGGCCAACAATACGACCTGCGTCTGTGTAATTGTAGGTGCCAAACATATGGTTGCCGAGATGAATGTCCGTGAATTTTCCATCTCTAAGAATGACCGTACTTCAAATTCCAATTCCAAATTTCTTACCTTGCCCACCATTTTGACTCTTGGCCGTGTCGCCGCTGTACCTCTTCTTGTTGCCACCTTCTACATGGATGGTTGGCGAGGAACAGTTGTTACTACAAGTATCTTCACTGCTGCAGCAGTTACAGATTGGCTTGATGGTTATATTGCTCGTAAGATGAAAATGAAATCTACATTTGGTGCCTTTTTAGATCCAGTAGCTGACAAGCTTATGGTTTCTGCCACATTGGTCTTATTATGTACTAGACCGTTGGAAGTTGCTGTGTTTCGACAAGTACCATGGCTATTGATTATACCTTCAATCACCATAATTGGCAGAGAGATAACCATGTCGGCACTCAGGGAATGGGCTGCTTCCCAGGGTAGCAAGCTTCTGGAGTTAATAATTTGGGGAAATGGAAAACAGCATCACAGATGGTGGCGTTAATCATCCTCCTTGCTACCCGGGACTGCAGTCGTGGAGGACCTGCTATTTTGGTGGGATCTGGGGTTGTCTTGCTTTACATTTCCGCAGGGCTTGCCTTATGGTCATTTGTAGTATATATGAGAGAAATATGCAAGGTGTTGCGGAGGTAGCATGTTTGATTGCTCTCTGCCTTCACATATATCCGCTTGTTTGGTGGGTTTTATTCTTTTGATCATTTCTTACGTAAACAGTTTAGTTAGTGATTCCATGGAAGGGAATGTAGTCCTTGTGAGTTGTGACCAATATATATAATGTTTGCTCTCCACAATGTCTAACTCTGCAAAGCACCATTCCTCCTATTCTTGAAAATTGTATTGTTTTTCCCCCTTAGTTACCACTGGTAaaggaaagatggaaaaaaagaaagaaagaTGACATGTGGATTGAATTGGAAGAATTCAGGTTACTAGTCACGCGAATCGAATTCCTATCTACAGTTTGGAGCCTATTAAAGTTTGCTACCTGAGAAATTTCGCCAGAGGAATCAATGTATGGTTCTAGTTGACTCTTAAATTGATTTTTGTCCTGGTCATATTATTTGCCAATACTTAAATACAACAGTTATTTTTCAGTGTCTGCACATGTTTAATATTCCATGCAATTTGACTTTACTTTTTTTTTTTT
Coding sequences of Glyma.18g302100
>Glyma.18g302100.1 sequence-type=CDS polypeptide=Glyma.18g302100.1.p locus=Glyma.18g302100 ID=Glyma.18g302100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTCGGTAGTTATTTGTCAAAAAGAAATCACAAGGGTTTGGTGTTGGGGGCCAACAATACGACCTGCGTCTGTGTAATTGTAGGTGCCAAACATATGGTTGCCGAGATGAATGTCCGTGAATTTTCCATCTCTAAGAATGACCGTACTTCAAATTCCAATTCCAAATTTCTTACCTTGCCCACCATTTTGACTCTTGGCCGTGTCGCCGCTGTACCTCTTCTTGTTGCCACCTTCTACATGGATGGTTGGCGAGGAACAGTTGTTACTACAAGTATCTTCACTGCTGCAGCAGTTACAGATTGGCTTGATGGTTATATTGCTCGTAAGATGAAAATGAAATCTACATTTGGTGCCTTTTTAGATCCAGTAGCTGACAAGCTTATGGTTTCTGCCACATTGGTCTTATTATGTACTAGACCGTTGGAAGTTGCTGTGTTTCGACAAGTACCATGGCTATTGATTATACCTTCAATCACCATAATTGGCAGAGAGATAACCATGTCGGCACTCAGGGAATGGGCTGCTTCCCAGGGTAGCAAGCTTCTGGAGGTTGTTGCAGTTAATAATTTGGGGAAATGGAAAACAGCATCACAGATGGTGGCGTTAATCATCCTCCTTGCTACCCGGGACTGCAGTCGTGGAGGACCTGCTATTTTGGTGGGATCTGGGGTTGTCTTGCTTTACATTTCCGCAGGGCTTGCCTTATGGTCATTTGTAGTATATATGAGAGAAATATGCAAGGTGTTGCGGAGGTAG

>Glyma.18g302100.2 sequence-type=CDS polypeptide=Glyma.18g302100.2.p locus=Glyma.18g302100 ID=Glyma.18g302100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTCGGTAGTTATTTGTCAAAAAGAAATCACAAGGGTTTGGTGTTGGGGGCCAACAATACGACCTGCGTCTGTGTAATTGTAGGTGCCAAACATATGGTTGCCGAGATGAATGTCCGTGAATTTTCCATCTCTAAGAATGACCGTACTTCAAATTCCAATTCCAAATTTCTTACCTTGCCCACCATTTTGACTCTTGGCCGTGTCGCCGCTGTACCTCTTCTTGTTGCCACCTTCTACATGGATGGTTGGCGAGGAACAGTTGTTACTACAAGTATCTTCACTGCTGCAGCAGTTACAGATTGGCTTGATGGTTATATTGCTCGTAAGATGAAAATGAAATCTACATTTGGTGCCTTTTTAGATCCAGTAGCTGACAAGCTTATGGTTTCTGCCACATTGGTCTTATTATGTACTAGACCGTTGGAAGTTGCTGTGTTTCGACAAGTACCATGGCTATTGATTATACCTTCAATCACCATAATTGGCAGAGAGATAACCATGTCGGCACTCAGGGAATGGGCTGCTTCCCAGGGTAGCAAGCTTCTGGAGTTAATAATTTGGGGAAATGGAAAACAGCATCACAGATGGTGGCGTTAA
Predicted protein sequences of Glyma.18g302100
>Glyma.18g302100.1.p sequence-type=predicted peptide transcript=Glyma.18g302100.1 locus=Glyma.18g302100 ID=Glyma.18g302100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLGSYLSKRNHKGLVLGANNTTCVCVIVGAKHMVAEMNVREFSISKNDRTSNSNSKFLTLPTILTLGRVAAVPLLVATFYMDGWRGTVVTTSIFTAAAVTDWLDGYIARKMKMKSTFGAFLDPVADKLMVSATLVLLCTRPLEVAVFRQVPWLLIIPSITIIGREITMSALREWAASQGSKLLEVVAVNNLGKWKTASQMVALIILLATRDCSRGGPAILVGSGVVLLYISAGLALWSFVVYMREICKVLRR*

>Glyma.18g302100.2.p sequence-type=predicted peptide transcript=Glyma.18g302100.2 locus=Glyma.18g302100 ID=Glyma.18g302100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLGSYLSKRNHKGLVLGANNTTCVCVIVGAKHMVAEMNVREFSISKNDRTSNSNSKFLTLPTILTLGRVAAVPLLVATFYMDGWRGTVVTTSIFTAAAVTDWLDGYIARKMKMKSTFGAFLDPVADKLMVSATLVLLCTRPLEVAVFRQVPWLLIIPSITIIGREITMSALREWAASQGSKLLELIIWGNGKQHHRWWR*






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