|
A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G05785.1 | AT | Got1/Sft2-like vescicle transport protein family | JGI | N/A | IEA |
GO:0016192 | GO-bp | vesicle-mediated transport | EnsemblGenomes | N/A | IEA |
GO:0016192 | GO-bp | vesicle-mediated transport | JGI | N/A | IEA |
GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
KOG1743 | KOG | Ferric reductase-like proteins | JGI | N/A | IEA |
PTHR21493 | Panther | CGI-141-RELATED/LIPASE CONTAINING PROTEIN | JGI | N/A | IEA |
PTHR21493:SF10 | Panther | JGI | N/A | IEA | |
PF04178 | PFAM | Got1/Sft2-like family | JGI | N/A | IEA |
Glyma.18g299400 not represented in the dataset |
Glyma.18g299400 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.08g362600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma18g53730 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.18g299400.2 sequence-type=transcript locus=Glyma.18g299400 ID=Glyma.18g299400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 CTTGACTTAACAATTGGGCTGAACGTTTGCCTAAAGATCTTGTTGCTGGAGCTGAAGGTTTCCATTTCATCCATTACCCCACCAAGATTTGATGATATAATTTGATTCTTCTTTCAAGAACCTAGCACTGCACTTTGTGAGGAAAAAAGTTGCTCAATCAATTGTTGCTGTCCAATACATTCCTGCAGTTGCACGCAAACATCCTCACTTAATTCTGTTATGATGGCCCAGTGACTGTCTCAACCTTAGTTTTTAAAAAAGCAGAAGCAGAAGCAGCATCAGCATCGAGTATCCTCTTCCTTCTCCTTCTTCCGCATCAACTCGTCTTATTAGAGTTTTTACTAATCAATTATGGCTTACGAGATAACCGAGATAAAGAGGGTTGGCATTTTGCTTGGTTGGCGTTCCACGTGGGCACTTTTCACTAATAGAGCCAACTTTAAGGGTTCTGCATCATTTCTTCTAGGTCTCTTTTTCATCTTTGTGAGGTGGCCAATTGTTGGTATAATACTTGAAATATACGGTTGTGTTTTTCTCTTCAGTGGATTTTGGTCATCTATCAAAGTGTTCCTCTACCATATCCCTGTTGTTGGATGGATTATACAGTTTATCTCTCCTCCTTGATTGTCACAGAAGGGATTTAACGGATAGCCTCTTAGTATATGGCTAATCATGGGTTTCGATTGTCTTGGTAATTTTTCCAATGACTTGTGTATGAATGCAATGTCTTGGCTAGTTTTTCCAAGAGTTTGCATCAGGCAAATTAGCTTCCTTTAGTGAGAAGTATCGCAGCATGCAATTTATGTAAAAGAGTTGGTACTTGGTAGGCTAATTTTGTTGTTTCAAGGCTCATATATACAAGCTGGTTATGCTGTTCAGGCTCGCTACTGATGTCAGACTGAACATATGTTTACTTTTGGCTTTATGCGCCTTGTCATTGTCAAGACCTCGCCAAAGGATGTTGAAATTCTTTTTGTATATTTTTGGTTTATGAAAGATTCACGGGTTATTAGTGTTAGTGTTGGAATTAAACCTTACACTGTCAAAAACATCTAGAGAAATGACTTGG >Glyma.18g299400.3 sequence-type=transcript locus=Glyma.18g299400 ID=Glyma.18g299400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 CTTGACTTAACAATTGGGCTGAACGTTTGCCTAAAGATCTTGTTGCTGGAGCTGAAGGTTTCCATTTCATCCATTACCCCACCAAGATTTGATGATATAATTTGATTCTTCTTTCAAGAACCTAGCACTGCACTTTGTGAGGAAAAAAGTTGCTCAATCAATTGTTGCTGTCCAATACATTCCTGCAGTTGCACGCAAACATCCTCACTTAATTCTGTTATGAAGCAGAAGCAGCATCAGCATCGAGTATCCTCTTCCTTCTCCTTCTTCCGCATCAACTCGTCTTATTAGAGTTTTTACTAATCAATTATGGCTTACGAGATAACCGAGATAAAGAGGGTTGGCATTTTGCTTGGTTGGCGTTCCACGTGGGCACTTTTCACTAATAGAGCCAACTTTAAGGGTTCTGCATCATTTCTTCTAGGTCTCTTTTTCATCTTTGTGAGGTGGCCAATTGTTGGTATAATACTTGAAATATACGGTTGTGTTTTTCTCTTCAGTGGATTTTGGTCATCTATCAAAGTGTTCCTCTACCATATCCCTGTTGTTGGATGGATTATACAGTTTATCTCTCCTCCTTGATTGTCACAGAAGGGATTTAACGGATAGCCTCTTAGTATATGGCTAATCATGGGTTTCGATTGTCTTGGTAATTTTTCCAATGACTTGTGTATGAATGCAATGTCTTGGCTAGTTTTTCCAAGAGTTTGCATCAGGCAAATTAGCTTCCTTTAGTGAGAAGTATCGCAGCATGCAATTTATGTAAAAGAGTTGGTACTTGGTAGGCTAATTTTGTTGTTTCAAGGCTCATATATACAAGCTGGTTATGCTGTTCAGGCTCGCTACTGATGTCAGACTGAACATATGTTTACTTTTGGCTTTATGCGCCTTGTCATTGTCAAGACCTCGCCAAAGGATGTTGAAATTCTTTTTGTATATTTTTGGTTTATGAAAGATTCACGGGTTATTAGTGTTAG >Glyma.18g299400.4 sequence-type=transcript locus=Glyma.18g299400 ID=Glyma.18g299400.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 CTTGACTTAACAATTGGGCTGAACGTTTGCCTAAAGATCTTGTTGCTGGAGCTGAAGGTTTCCATTTCATCCATTACCCCACCAAGATTTGATGATATAATTTGATTCTTCTTTCAAGAACCTAGCACTGCACTTTGTGAGGAAAAAAGTTGCTCAATCAATTGTTGCTGTCCAATACATTCCTGCAGTTGCACGCAAACATCCTCACTTAATTCTGTTATGATGGCCCAGTGACTGTCTCAACCTTAGTTTTTAAAAAAGCAGAAGCAGAAGCAGCATCAGCATCGAGTATCCTCTTCCTTCTCCTTCTTCCGCATCAACTCGTCTTATTAGAGTTTTTACTAATCAATTATGGCTTACGAGATAACCGAGATAAAGAAGATTGGTATAGGCCTAATTGGTTTCGGCTTATTTTTCACATTTCTTGGCATAATTCTTTTCTTTGACCGTGGTTTGCTTGCTCTGGGAAATATTTTTTCCTTGGCAGGGGTTGGCATTTTGCTTGGTTGGCGTTCCACGTGGGCACTTTTCACTAATAGAGCCAACTTTAAGGGTTCTGCATCATTTCTTCTAGGTCTCTTTTTCATCTTTGTGAGGTGGCCAATTGTTGGTATAATACTTGAAATATACGGTTGTGTTTTTCTCTTCAGTGGATTTTGGTCATCTATCAAAGTGTTCCTCTACCATATCCCTGTTGTTGGATGGATTATACAGTTTATCTCTCCTCCTTGATTGTCACAGAAGGGATTTAACGGATAGCCTCTTAGTATATGGCTAATCATGGGTTTCGATTGTCTTGGTAATTTTTCCAATGACTTGTGTATGAATGCAATGTCTTGGCTAGTTTTTCCAAGAGTTTGCATCAGGCAAATTAGCTTCCTTTAGTGAGAAGTATCGCAGCATGCAATTTATGTAAAAGAGTTGGTACTTGGTAGGCTAATTTTGTTGTTTCAAGGCTCATATATACAAGCTGGTTATGCTGTTCAGGCTCGCTACTGATGTCAGACTGAACATATGTTTACTTTTGGCTTTATGCGCCTTGTCATTGTCAAGACCTCGCCAAAGGATGTTGAAATTCTTTTTGTATATTTTTGGTTTATGAAAGATTCACGGGTTATTAGTGTTAG >Glyma.18g299400.5 sequence-type=transcript locus=Glyma.18g299400 ID=Glyma.18g299400.5.Wm82.a2.v1 annot-version=Wm82.a2.v1 CTTGACTTAACAATTGGGCTGAACGTTTGCCTAAAGATCTTGTTGCTGGAGCTGAAGGTTTCCATTTCATCCATTACCCCACCAAGATTTGATGATATAATTTGATTCTTCTTTCAAGAACCTAGCACTGCACTTTGTGAGGAAAAAAGTTGCTCAATCAATTGTTGCTGTCCAATACATTCCTGCAGTTGCACGCAAACATCCTCACTTAATTCTGTTATGAAGCAGAAGCAGCATCAGCATCGAGTATCCTCTTCCTTCTCCTTCTTCCGCATCAACTCGTCTTATTAGAGTTTTTACTAATCAATTATGGCTTACGAGATAACCGAGATAAAGAAGATTGGTATAGGCCTAATTGGTTTCGGCTTATTTTTCACATTTCTTGGCATAATTCTTTTCTTTGACCGTGGTTTGCTTGCTCTGGGAAATATTTTTTCCTTGGCAGGGGTTGGCATTTTGCTTGGTTGGCGTTCCACGTGGGCACTTTTCACTAATAGAGCCAACTTTAAGGGTTCTGCATCATTTCTTCTAGGTCTCTTTTTCATCTTTGTGAGGTGGCCAATTGTTGGTATAATACTTGAAATATACGGTTGTGTTTTTCTCTTCAGTGGATTTTGGTCATCTATCAAAGTGTTCCTCTACCATATCCCTGTTGTTGGATGGATTATACAGTTTATCTCTCCTCCTTGATTGTCACAGAAGGGATTTAACGGATAGCCTCTTAGTATATGGCTAATCATGGGTTTCGATTGTCTTGGTAATTTTTCCAATGACTTGTGTATGAATGCAATGTCTTGGCTAGTTTTTCCAAGAGTTTGCATCAGGCAAATTAGCTTCCTTTAGTGAGAAGTATCGCAGCATGCAATTTATGTAAAAGAGTTGGTACTTGGTAGGCTAATTTTGTTGTTTCAAGGCTCATATATACAAGCTGGTTATGCTGTTCAGGCTCGCTACTGATGTCAGACTGAACATATGTTTACTTTTGGCTTTATGCGCCTTGTCATTGTCAAGACCTCGCCAAAGGATGTTGAAATTCTTTTTGTATATTTTTGGTTTATGAAAGATTCACGGGTTATTAGTGTTAG >Glyma.18g299400.6 sequence-type=transcript locus=Glyma.18g299400 ID=Glyma.18g299400.6.Wm82.a2.v1 annot-version=Wm82.a2.v1 TTTGTTTGGGCTTGAACCCATGAGGCCTGTGATAACAAGTAGATGGCCCAGTGACTGTCTCAACCTTAGTTTTTAAAAAAGCAGAAGCAGAAGCAGCATCAGCATCGAGTATCCTCTTCCTTCTCCTTCTTCCGCATCAACTCGTCTTATTAGAGTTTTTACTAATCAATTATGGCTTACGAGATAACCGAGATAAAGAAGATTGGTATAGGCCTAATTGGTTTCGGCTTATTTTTCACATTTCTTGGCATAATTCTTTTCTTTGACCGTGGTTTGCTTGCTCTGGGAAATATTTTTTCCTTGGCAGGGGTTGGCATTTTGCTTGGTTGGCGTTCCACGTGGGCACTTTTCACTAATAGAGCCAACTTTAAGGGTTCTGCATCATTTCTTCTAGGTCTCTTTTTCATCTTTGTGAGGTGGCCAATTGTTGGTATAATACTTGAAATATACGGTTGTGTTTTTCTCTTCAGTGGATTTTGGTCATCTATCAAAGTGTTCCTCTACCATATCCCTGTTGTTGGATGGATTATACAGTTTATCTCTCCTCCTTGATTGTCACAGAAGGGATTTAACGGATAGCCTCTTAGTATATGGCTAATCATGGGTTTCGATTGTCTTGGTAATTTTTCCAATGACTTGTGTATGAATGCAATGTCTTGGCTAGTTTTTCCAAGAGTTTGCATCAGGCAAATTAGCTTCCTTTAGTGAGAAGTATCGCAGCATGCAATTTATGTAAAAGAGTTGGTACTTGGTAGGCTAATTTTGTTGTTTCAAGGCTCATATATACAAGCTGGTTATGCTGTTCAGGCTCGCTACTGATGTCAGACTGAACATATGTTTACTTTTGGCTTTATGCGCCTTGTCATTGTCAAGACCTCGCCAAAGGATGTTGAAATTCTTTTTGTATATTTTTGGTTTATGAAAGATTCACGGGTTATTAGTGTTAGTGTTGGAATTAAACCTTACACTGTCAAAAACATCTAGAGAAATGACTTGGGTTTTC
>Glyma.18g299400.1 sequence-type=CDS polypeptide=Glyma.18g299400.1.p locus=Glyma.18g299400 ID=Glyma.18g299400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTACGAGATAACCGAGATAAAGAAGATTGGTATAGGCCTAATTGGTTTCGGCTTATTTTTCACATTTCTTGGCATAATTCTTTTCTTTGACCGTGGTTTGCTTGCTCTGGGAAATATTTTTTCCTTGGCAGGGGTTGGCATTTTGCTTGGTTGGCGTTCCACGTGGGCACTTTTCACTAATAGAGCCAACTTTAAGGGTTCTGCATCATTTCTTCTAGGTCTCTTTTTCATCTTTGTGAGGTGGCCAATTGTTGGTATAATACTTGAAATATACGGTTGTGTTTTTCTCTTCAGTGGATTTTGGTCATCTATCAAAGTGTTCCTCTACCATATCCCTGTTGTTGGATGGATTATACAGTTTATCTCTCTGGCCATCTTGCAATACATTATACTGCTAGTGTTTTTGGGGATTGACCACTATGTGCTGCTATCCAAGATCGATGACTATTCAGTAGCAGGAGTGATTCTGGTGTTATTAAGGTTTTCAACCAGTCTCATGTTAGCTACCCACAAGGGATGA >Glyma.18g299400.2 sequence-type=CDS polypeptide=Glyma.18g299400.2.p locus=Glyma.18g299400 ID=Glyma.18g299400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTACGAGATAACCGAGATAAAGAGGGTTGGCATTTTGCTTGGTTGGCGTTCCACGTGGGCACTTTTCACTAATAGAGCCAACTTTAAGGGTTCTGCATCATTTCTTCTAGGTCTCTTTTTCATCTTTGTGAGGTGGCCAATTGTTGGTATAATACTTGAAATATACGGTTGTGTTTTTCTCTTCAGTGGATTTTGGTCATCTATCAAAGTGTTCCTCTACCATATCCCTGTTGTTGGATGGATTATACAGTTTATCTCTCCTCCTTGA >Glyma.18g299400.3 sequence-type=CDS polypeptide=Glyma.18g299400.3.p locus=Glyma.18g299400 ID=Glyma.18g299400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTACGAGATAACCGAGATAAAGAGGGTTGGCATTTTGCTTGGTTGGCGTTCCACGTGGGCACTTTTCACTAATAGAGCCAACTTTAAGGGTTCTGCATCATTTCTTCTAGGTCTCTTTTTCATCTTTGTGAGGTGGCCAATTGTTGGTATAATACTTGAAATATACGGTTGTGTTTTTCTCTTCAGTGGATTTTGGTCATCTATCAAAGTGTTCCTCTACCATATCCCTGTTGTTGGATGGATTATACAGTTTATCTCTCCTCCTTGA >Glyma.18g299400.4 sequence-type=CDS polypeptide=Glyma.18g299400.4.p locus=Glyma.18g299400 ID=Glyma.18g299400.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTACGAGATAACCGAGATAAAGAAGATTGGTATAGGCCTAATTGGTTTCGGCTTATTTTTCACATTTCTTGGCATAATTCTTTTCTTTGACCGTGGTTTGCTTGCTCTGGGAAATATTTTTTCCTTGGCAGGGGTTGGCATTTTGCTTGGTTGGCGTTCCACGTGGGCACTTTTCACTAATAGAGCCAACTTTAAGGGTTCTGCATCATTTCTTCTAGGTCTCTTTTTCATCTTTGTGAGGTGGCCAATTGTTGGTATAATACTTGAAATATACGGTTGTGTTTTTCTCTTCAGTGGATTTTGGTCATCTATCAAAGTGTTCCTCTACCATATCCCTGTTGTTGGATGGATTATACAGTTTATCTCTCCTCCTTGA >Glyma.18g299400.5 sequence-type=CDS polypeptide=Glyma.18g299400.5.p locus=Glyma.18g299400 ID=Glyma.18g299400.5.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTACGAGATAACCGAGATAAAGAAGATTGGTATAGGCCTAATTGGTTTCGGCTTATTTTTCACATTTCTTGGCATAATTCTTTTCTTTGACCGTGGTTTGCTTGCTCTGGGAAATATTTTTTCCTTGGCAGGGGTTGGCATTTTGCTTGGTTGGCGTTCCACGTGGGCACTTTTCACTAATAGAGCCAACTTTAAGGGTTCTGCATCATTTCTTCTAGGTCTCTTTTTCATCTTTGTGAGGTGGCCAATTGTTGGTATAATACTTGAAATATACGGTTGTGTTTTTCTCTTCAGTGGATTTTGGTCATCTATCAAAGTGTTCCTCTACCATATCCCTGTTGTTGGATGGATTATACAGTTTATCTCTCCTCCTTGA >Glyma.18g299400.6 sequence-type=CDS polypeptide=Glyma.18g299400.6.p locus=Glyma.18g299400 ID=Glyma.18g299400.6.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTACGAGATAACCGAGATAAAGAAGATTGGTATAGGCCTAATTGGTTTCGGCTTATTTTTCACATTTCTTGGCATAATTCTTTTCTTTGACCGTGGTTTGCTTGCTCTGGGAAATATTTTTTCCTTGGCAGGGGTTGGCATTTTGCTTGGTTGGCGTTCCACGTGGGCACTTTTCACTAATAGAGCCAACTTTAAGGGTTCTGCATCATTTCTTCTAGGTCTCTTTTTCATCTTTGTGAGGTGGCCAATTGTTGGTATAATACTTGAAATATACGGTTGTGTTTTTCTCTTCAGTGGATTTTGGTCATCTATCAAAGTGTTCCTCTACCATATCCCTGTTGTTGGATGGATTATACAGTTTATCTCTCCTCCTTGA
>Glyma.18g299400.1.p sequence-type=predicted peptide transcript=Glyma.18g299400.1 locus=Glyma.18g299400 ID=Glyma.18g299400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAYEITEIKKIGIGLIGFGLFFTFLGIILFFDRGLLALGNIFSLAGVGILLGWRSTWALFTNRANFKGSASFLLGLFFIFVRWPIVGIILEIYGCVFLFSGFWSSIKVFLYHIPVVGWIIQFISLAILQYIILLVFLGIDHYVLLSKIDDYSVAGVILVLLRFSTSLMLATHKG* >Glyma.18g299400.2.p sequence-type=predicted peptide transcript=Glyma.18g299400.2 locus=Glyma.18g299400 ID=Glyma.18g299400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAYEITEIKRVGILLGWRSTWALFTNRANFKGSASFLLGLFFIFVRWPIVGIILEIYGCVFLFSGFWSSIKVFLYHIPVVGWIIQFISPP* >Glyma.18g299400.3.p sequence-type=predicted peptide transcript=Glyma.18g299400.3 locus=Glyma.18g299400 ID=Glyma.18g299400.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAYEITEIKRVGILLGWRSTWALFTNRANFKGSASFLLGLFFIFVRWPIVGIILEIYGCVFLFSGFWSSIKVFLYHIPVVGWIIQFISPP* >Glyma.18g299400.4.p sequence-type=predicted peptide transcript=Glyma.18g299400.4 locus=Glyma.18g299400 ID=Glyma.18g299400.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAYEITEIKKIGIGLIGFGLFFTFLGIILFFDRGLLALGNIFSLAGVGILLGWRSTWALFTNRANFKGSASFLLGLFFIFVRWPIVGIILEIYGCVFLFSGFWSSIKVFLYHIPVVGWIIQFISPP* >Glyma.18g299400.5.p sequence-type=predicted peptide transcript=Glyma.18g299400.5 locus=Glyma.18g299400 ID=Glyma.18g299400.5.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAYEITEIKKIGIGLIGFGLFFTFLGIILFFDRGLLALGNIFSLAGVGILLGWRSTWALFTNRANFKGSASFLLGLFFIFVRWPIVGIILEIYGCVFLFSGFWSSIKVFLYHIPVVGWIIQFISPP* >Glyma.18g299400.6.p sequence-type=predicted peptide transcript=Glyma.18g299400.6 locus=Glyma.18g299400 ID=Glyma.18g299400.6.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAYEITEIKKIGIGLIGFGLFFTFLGIILFFDRGLLALGNIFSLAGVGILLGWRSTWALFTNRANFKGSASFLLGLFFIFVRWPIVGIILEIYGCVFLFSGFWSSIKVFLYHIPVVGWIIQFISPP*
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