Glyma.18g298900

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.18g298900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.18g298900): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.18g298900

Feature Type:	gene_model
Chromosome:	Gm18
Start:	57653717
stop:	57659234
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.18g298900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G20370.1	AT	PEBP (phosphatidylethanolamine-binding protein) family protein	JGI	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
KOG3346	KOG	Phosphatidylethanolamine binding protein	JGI	N/A	IEA
PTHR11362	Panther	PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN	JGI	N/A	IEA
PF01161	PFAM	Phosphatidylethanolamine-binding protein	JGI	N/A	IEA

Proteins Associated with Glyma.18g298900

Locus	Gene Symbol	Protein Name
	FT1a	Flowering locus T gene 1a
	TSF2	Twin sister of FT gene 2
	FT1A	protein flowering locus T1a
	FT1a	Flowering Locus T 1 gene a
	FT1a	Flowering Locus T 1 gene a

Expression Patterns of Glyma.18g298900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.18g298900 not represented in the dataset	Glyma.18g298900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.18g298900

Paralog	Evidence	Comments
Glyma.08g363100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g298900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma18g53680	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.18g298900

Limit To All Plant Sequences

>Glyma.18g298900.1 sequence-type=CDS polypeptide=Glyma.18g298900.1.p locus=Glyma.18g298900 ID=Glyma.18g298900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCTAGATCAACGGACCCTCTTGTTATTGGAGGTGTAATAGGAGATGTTTTGGAGCCTTTCACAAGTAGCGTTTCTATGGGGATAGTCTATAATAATTGCCCTCAAGTTATCAACTGCTGTGAGCTCAAACCCTCCAAAATCCTCAATCGACCAAGAATTGAAATTGGTGGAGATGACCTCAGGACCTTTTACACCCTGGTTATGGTGGATCCTGATGCACCTAGCCCAGGCAATCCAACCCAGAGAGAATATTTGCACTGGTTGATAACCAATATTCCTGCAACTACAGGGGCAAACTTCGGAGAAGAGATTGTCTCCTATGAAAGTCCACGTCCAATAGTAGGGATTCATCGAATAGTTTTTGTGTTATTTCGTCAGCTGCGTAGACTAACTCTGCAACCTCCAGGCTGGCGCCAGAATTTCAACACTAGAGACTTTGCTGAGATTTATAATCTTGGATTACCAGTAGCGGCCATGTACTTCAACTGTAAACGAGAAAATGATCAAAGCAGTGGAAGAAGAAGATAA

Predicted protein sequences of Glyma.18g298900

Limit To All Plant Sequences

>Glyma.18g298900.1.p sequence-type=predicted peptide transcript=Glyma.18g298900.1 locus=Glyma.18g298900 ID=Glyma.18g298900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPRSTDPLVIGGVIGDVLEPFTSSVSMGIVYNNCPQVINCCELKPSKILNRPRIEIGGDDLRTFYTLVMVDPDAPSPGNPTQREYLHWLITNIPATTGANFGEEIVSYESPRPIVGIHRIVFVLFRQLRRLTLQPPGWRQNFNTRDFAEIYNLGLPVAAMYFNCKRENDQSSGRRR*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain