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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G29880.1 | AT | glycyl-tRNA synthetase / glycine--tRNA ligase | JGI | N/A | IEA |
| GO:0006418 | GO-bp | tRNA aminoacylation for protein translation | JGI | N/A | IEA |
| GO:0006426 | GO-bp | glycyl-tRNA aminoacylation | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | JGI | N/A | IEA |
| GO:0004812 | GO-mf | aminoacyl-tRNA ligase activity | JGI | N/A | IEA |
| GO:0004820 | GO-mf | glycine-tRNA ligase activity | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| PTHR10745 | Panther | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 | JGI | N/A | IEA |
| PTHR10745:SF0 | Panther | GLYCINE--TRNA LIGASE | JGI | N/A | IEA |
| PF00587 | PFAM | tRNA synthetase class II core domain (G, H, P, S and T) | JGI | N/A | IEA |
| PF03129 | PFAM | Anticodon binding domain | JGI | N/A | IEA |
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Glyma.18g298400 not represented in the dataset |
Glyma.18g298400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.08g363700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
>Glyma.18g298400.1 sequence-type=CDS polypeptide=Glyma.18g298400.1.p locus=Glyma.18g298400 ID=Glyma.18g298400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAGCCTCAGACTGCGCAGGGCATTTTAGTCAATTTCAAGGATTTGTATTATTACAATGCTAACAAGCTTCCTTTTGCTGCTGCACAGATTGGACAGGCGTTTAGGAATGAGATCAAGTTCACATTGGCGGAGAGTGAGCACTTTGTTGACCCTCAAGATAAGTCTCATCCCAAGTACCATCAAGTTGCTGACTTGAAGTTCTTAATGTTCCCGAGGTCTGCCAAGAGGATTCCTCTTCGTGATGCTGTTTCCAAGGTTGATGGTCACTATGCTGCTGACTGTTGGGATGCAGAGATTGAGTGCTCCTTTGGTTGGATTGAGTGTGTTGGCATTGCTGACAGATCTGCATACGATTTGCGTGCTCACTCGGATAAAAGTGGTGTTCTACAAGTGGCTCGTGAAAAATTTTCAGAACCTAAGGAAGTGGAGAAAGAGCTGGGTCTGGCATTCAAGGGGAATCCGAGGATGGTGGTTGAAGCACATGAGGTGGAGTTTCAAGTGTGTACACTTGGGAAAGTTGTGACTATTAAGAAGAATATGGTGACCATTCAAAAGAAGAAAAATATAGAGCACGAGCGAGTTTTTACACGGTCTGTGATTGAATCATCATTTGGAATTGGAAGGATAATTTATTGCCTCTTTGAGCACACATTCTACACGAGGCAAAGTAAAGCTGGGGATCAACAGTTAAATGTATTTCGCTTCTCTTCACTTGTAGCTCCTATCAAATGTACAGTTTTCCCGCTGGTTCAGAATCAGAAGTATGAAGAGGTTGCGAAACTCACTTCCAAGTCATTGACTGCTGCTGGAATTTCGCACAAGATTGACACTTCAACTATGTGGATAAAATATAAGTTCTCTTTAATATGTACATCAATAGGAAAACGGTATGCAAGAACAGATGAACTTGACGTGCCCTTTGCTATCACTGTAGATTCAACATCATCAGTGACTATTCGGGAGAGGGACAGCAAGGGTCAAGTGCGTGTTGATGTGGATAAAGCTGCCTCTGTTGTTAGGGAGGTGACTGAAGGCCAGAGGACATGGGAAGATGTGTGGTCAACTTCTCCTCATCATTCCTCTACATCTGCATCTGCAGATGATTGA
>Glyma.18g298400.1.p sequence-type=predicted peptide transcript=Glyma.18g298400.1 locus=Glyma.18g298400 ID=Glyma.18g298400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKPQTAQGILVNFKDLYYYNANKLPFAAAQIGQAFRNEIKFTLAESEHFVDPQDKSHPKYHQVADLKFLMFPRSAKRIPLRDAVSKVDGHYAADCWDAEIECSFGWIECVGIADRSAYDLRAHSDKSGVLQVAREKFSEPKEVEKELGLAFKGNPRMVVEAHEVEFQVCTLGKVVTIKKNMVTIQKKKNIEHERVFTRSVIESSFGIGRIIYCLFEHTFYTRQSKAGDQQLNVFRFSSLVAPIKCTVFPLVQNQKYEEVAKLTSKSLTAAGISHKIDTSTMWIKYKFSLICTSIGKRYARTDELDVPFAITVDSTSSVTIRERDSKGQVRVDVDKAASVVREVTEGQRTWEDVWSTSPHHSSTSASADD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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