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Report for Sequence Feature Glyma.18g297800

Feature Type:gene_model
Chromosome:Gm18
Start:57503410
stop:57509980
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g297800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G02280.1AT Flavodoxin family protein JGI N/AIEA
GO:0016226GO-bp iron-sulfur cluster assembly EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003958GO-mf NADPH-hemoprotein reductase activity EnsemblGenomesN/AIEA
GO:0010181GO-mf FMN binding EnsemblGenomesN/AIEA
GO:0010181GO-mf FMN binding JGI N/AIEA
GO:0016491GO-mf oxidoreductase activity EnsemblGenomesN/AIEA
GO:0016491GO-mf oxidoreductase activity JGI N/AIEA
GO:0016651GO-mf oxidoreductase activity, acting on NAD(P)H EnsemblGenomesN/AIEA
GO:0050660GO-mf flavin adenine dinucleotide binding EnsemblGenomesN/AIEA
GO:0050661GO-mf NADP binding EnsemblGenomesN/AIEA
KOG1159 KOG NADP-dependent flavoprotein reductase JGI N/AIEA
PTHR19384Panther FLAVODOXIN-RELATED JGI N/AIEA
PTHR19384:SF10Panther NADPH-DEPENDENT DIFLAVIN OXIDOREDUCTASE 1 JGI N/AIEA
PF00175PFAM Oxidoreductase NAD-binding domain JGI N/AIEA
PF00258PFAM Flavodoxin JGI N/AIEA
PF00667PFAM FAD binding domain JGI N/AIEA
GN7V-46197SoyCyc9-rxn flavin reductase (NADPH) Plant Metabolic Network ISS

Expression Patterns of Glyma.18g297800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g297800
ParalogEvidenceComments
Glyma.08g364300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g297800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g53510 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g297800
>Glyma.18g297800.2 sequence-type=transcript locus=Glyma.18g297800 ID=Glyma.18g297800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGCTGCATTGATTAACGACTATGTACATCTATGGTGCTGAAACATTGTGAGAATGTGGGCGAAGTAGGCACTGGACAATATGATAATGACCTAGTTAGTCTACAATTTTGATCAAAGGGATTTTTACTGTCTTGGCAGATATTTTGGATAAAACCTTACATGTGAATTCTAACAGTTTGTTGCAAAGAAGCTAGACAAAAGATTAATGGACCTCGGAGGAACAACTATTGTAGAAAGAGGCTTGGGAGATGATCAACACCCTTCAGGCTACGAAGCTTCTCTGGATCCATGGCTGTCTTCTTTGTGGAGAATGTTAAACATGGTTAAACCAGAATTCTTACCAAATGGTCCTGATGTTGTGATTCAAGATACAGTATTGATTGATCAACCCAAAGTCCGGATCACATATCACAACATTGCAAATGACGAGTCACATTTTTCTAGTGCCTCGGATTTAACATGTCTTAATATGCAAATTGGGAGCGCTCGATCAATGCACCCTGGAAAATCATCTTCCGACAGAAGTAGGCCTGGTTGCTTTCTTAAGATGGTAAAGAATCTTCCTTTGACCAGATCAAACTGTGGAAAAGATGTTCGTCATTTTGAATTTGAATTTGTTTCACATGTTCTTAAATATGAGACTGGTGATGTCCTTGAAGTTCTACCTGGTCAAGATTCTGCTGCAGTTGATGCTTTCATACGACGTTGTAATTTGGATCCTGATTCATTCATCACTGTTAGTCTAAGAGAAATGGATGATCACAATACACATGACTCTAGAATCCCTGTAAAATTAAGAACTTTTGTGGAATTTTCAATGGATGTAGCTTCAGCTTCCCCACGGCGCTATTTATTTGAGGTTATGAGTTTCTTTGCAACAGCAGAACATGAGAGAGAGAGACTTAAATATTTTGCTTCACCTGAAGGAAGGGATGACCTGTACCAATATAACCAGAAAGAAAGAAGAACTGTTCTTGAGGTGTTAGAGGATTTTCCTTCTGTACAAATGCCATTTGAGTGGTTAGTCCAATTGGTTCCACCTCTGAAACCTAGAGCATTCTCCATATCTTCTTCTCAATCAGCTCACCCCAATCAAGTACACTTGACTGTGAATGTGGTGTCTTGGACAACACCTTACAAGAGGAAAAAAAAAGGACTATGCTCGTCGTGGCTAGCTGCATTAGATCCCTGTGATGGTATCCATGTTCCAACCTGGTTCCATAAAGGTTTACTTCCGACACCATCACCGTCACTCCCCCTCATACTTGTTGGACCTGGAACAGGATGTGCACCTTTTCGTGGATTTATAGAGGAAAGAGCAGTGCAAAGTAGAACTAATTCCACTGCTCCAATTATTTTTTTCTTTGGTTGTTGGAATGAAGACGGTGACTTTCTGTATCGTGATTTTTGGTTGAGTCATTCACAGAACAAAGGGGTGCTTTCAGAAGCAAAGGGTGGCGGTTTCTATGTTGCTTTCTCTAGAGACCAGCCGCAGAAGGTTTATGTTCAACATAAGATGAGGGAGCAGAGCCAAAGGATCTGGAACCTATTAGCTGAGGGGGCTGCAGTTTATATAGCAGGTTCTTCAACTAAAATGCCTGCAGATGTAACATCAGCTTTTGAGGAAATTGTATCCTACGAAAATGAGGTTTCAGCAGAAGATGCAGTTAGGTGGATTAGAGCATTAGAAAAGTGTGGTAAATTTCATATTGAGGCATGGTCTTAGAACAAACAAGTCTTGGACTCCCGATTTTTAGACCTTTTGTAGTGCAATTTTTGACCAATGAATATTTTTTTGTTATAATGATTATTATCATGTGGTTTAATGGCAATTTTGTTCTTTCATTT
Coding sequences of Glyma.18g297800
>Glyma.18g297800.1 sequence-type=CDS polypeptide=Glyma.18g297800.1.p locus=Glyma.18g297800 ID=Glyma.18g297800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAGGCATGCGTAAACTGCTCATACTTTATGCCTCTCAGACCGGCAATGCATTGGACGCAGCTGAACGACTTTCTCGCGAAGCTGAACGGAGAGCCTGCCCCTTCAACCTTCTCTCTGTAGACCAATATGATCCTAGTTTGTTACCACAGGAGGAGGCTGTCATTTTTGTGGTTTCTACCACTGGCCAAGGTGATACACCCGATTCCATGAAGGTATTTTGGAGATATCTTCTTCAGAGAAACCTAGGTCAGCGTTGGCTGAGTGGGGTTCTCTATGCGGTTTTCGGCTTGGGTGATTCTAGTTATCAGAAGTACAATTTTGTTGCAAAGAAGCTAGACAAAAGATTAATGGACCTCGGAGGAACAACTATTGTAGAAAGAGGCTTGGGAGATGATCAACACCCTTCAGGCTACGAAGCTTCTCTGGATCCATGGCTGTCTTCTTTGTGGAGAATGTTAAACATGGTTAAACCAGAATTCTTACCAAATGGTCCTGATGTTGTGATTCAAGATACAGTATTGATTGATCAACCCAAAGTCCGGATCACATATCACAACATTGCAAATGACGAGTCACATTTTTCTAGTGCCTCGGATTTAACATGTCTTAATATGCAAATTGGGAGCGCTCGATCAATGCACCCTGGAAAATCATCTTCCGACAGAAGTAGGCCTGGTTGCTTTCTTAAGATGGTAAAGAATCTTCCTTTGACCAGATCAAACTGTGGAAAAGATGTTCGTCATTTTGAATTTGAATTTGTTTCACATGTTCTTAAATATGAGACTGGTGATGTCCTTGAAGTTCTACCTGGTCAAGATTCTGCTGCAGTTGATGCTTTCATACGACGTTGTAATTTGGATCCTGATTCATTCATCACTGTTAGTCTAAGAGAAATGGATGATCACAATACACATGACTCTAGAATCCCTGTAAAATTAAGAACTTTTGTGGAATTTTCAATGGATGTAGCTTCAGCTTCCCCACGGCGCTATTTATTTGAGGTTATGAGTTTCTTTGCAACAGCAGAACATGAGAGAGAGAGACTTAAATATTTTGCTTCACCTGAAGGAAGGGATGACCTGTACCAATATAACCAGAAAGAAAGAAGAACTGTTCTTGAGGTGTTAGAGGATTTTCCTTCTGTACAAATGCCATTTGAGTGGTTAGTCCAATTGGTTCCACCTCTGAAACCTAGAGCATTCTCCATATCTTCTTCTCAATCAGCTCACCCCAATCAAGTACACTTGACTGTGAATGTGGTGTCTTGGACAACACCTTACAAGAGGAAAAAAAAAGGACTATGCTCGTCGTGGCTAGCTGCATTAGATCCCTGTGATGGTATCCATGTTCCAACCTGGTTCCATAAAGGTTTACTTCCGACACCATCACCGTCACTCCCCCTCATACTTGTTGGACCTGGAACAGGATGTGCACCTTTTCGTGGATTTATAGAGGAAAGAGCAGTGCAAAGTAGAACTAATTCCACTGCTCCAATTATTTTTTTCTTTGGTTGTTGGAATGAAGACGGTGACTTTCTGTATCGTGATTTTTGGTTGAGTCATTCACAGAACAAAGGGGTGCTTTCAGAAGCAAAGGGTGGCGGTTTCTATGTTGCTTTCTCTAGAGACCAGCCGCAGAAGGTTTATGTTCAACATAAGATGAGGGAGCAGAGCCAAAGGATCTGGAACCTATTAGCTGAGGGGGCTGCAGTTTATATAGCAGGTTCTTCAACTAAAATGCCTGCAGATGTAACATCAGCTTTTGAGGAAATTGTATCCTACGAAAATGAGGTTTCAGCAGAAGATGCAGTTAGGTGGATTAGAGCATTAGAAAAGTGTGGTAAATTTCATATTGAGGCATGGTCTTAG

>Glyma.18g297800.2 sequence-type=CDS polypeptide=Glyma.18g297800.2.p locus=Glyma.18g297800 ID=Glyma.18g297800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACCTCGGAGGAACAACTATTGTAGAAAGAGGCTTGGGAGATGATCAACACCCTTCAGGCTACGAAGCTTCTCTGGATCCATGGCTGTCTTCTTTGTGGAGAATGTTAAACATGGTTAAACCAGAATTCTTACCAAATGGTCCTGATGTTGTGATTCAAGATACAGTATTGATTGATCAACCCAAAGTCCGGATCACATATCACAACATTGCAAATGACGAGTCACATTTTTCTAGTGCCTCGGATTTAACATGTCTTAATATGCAAATTGGGAGCGCTCGATCAATGCACCCTGGAAAATCATCTTCCGACAGAAGTAGGCCTGGTTGCTTTCTTAAGATGGTAAAGAATCTTCCTTTGACCAGATCAAACTGTGGAAAAGATGTTCGTCATTTTGAATTTGAATTTGTTTCACATGTTCTTAAATATGAGACTGGTGATGTCCTTGAAGTTCTACCTGGTCAAGATTCTGCTGCAGTTGATGCTTTCATACGACGTTGTAATTTGGATCCTGATTCATTCATCACTGTTAGTCTAAGAGAAATGGATGATCACAATACACATGACTCTAGAATCCCTGTAAAATTAAGAACTTTTGTGGAATTTTCAATGGATGTAGCTTCAGCTTCCCCACGGCGCTATTTATTTGAGGTTATGAGTTTCTTTGCAACAGCAGAACATGAGAGAGAGAGACTTAAATATTTTGCTTCACCTGAAGGAAGGGATGACCTGTACCAATATAACCAGAAAGAAAGAAGAACTGTTCTTGAGGTGTTAGAGGATTTTCCTTCTGTACAAATGCCATTTGAGTGGTTAGTCCAATTGGTTCCACCTCTGAAACCTAGAGCATTCTCCATATCTTCTTCTCAATCAGCTCACCCCAATCAAGTACACTTGACTGTGAATGTGGTGTCTTGGACAACACCTTACAAGAGGAAAAAAAAAGGACTATGCTCGTCGTGGCTAGCTGCATTAGATCCCTGTGATGGTATCCATGTTCCAACCTGGTTCCATAAAGGTTTACTTCCGACACCATCACCGTCACTCCCCCTCATACTTGTTGGACCTGGAACAGGATGTGCACCTTTTCGTGGATTTATAGAGGAAAGAGCAGTGCAAAGTAGAACTAATTCCACTGCTCCAATTATTTTTTTCTTTGGTTGTTGGAATGAAGACGGTGACTTTCTGTATCGTGATTTTTGGTTGAGTCATTCACAGAACAAAGGGGTGCTTTCAGAAGCAAAGGGTGGCGGTTTCTATGTTGCTTTCTCTAGAGACCAGCCGCAGAAGGTTTATGTTCAACATAAGATGAGGGAGCAGAGCCAAAGGATCTGGAACCTATTAGCTGAGGGGGCTGCAGTTTATATAGCAGGTTCTTCAACTAAAATGCCTGCAGATGTAACATCAGCTTTTGAGGAAATTGTATCCTACGAAAATGAGGTTTCAGCAGAAGATGCAGTTAGGTGGATTAGAGCATTAGAAAAGTGTGGTAAATTTCATATTGAGGCATGGTCTTAG
Predicted protein sequences of Glyma.18g297800
>Glyma.18g297800.1.p sequence-type=predicted peptide transcript=Glyma.18g297800.1 locus=Glyma.18g297800 ID=Glyma.18g297800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKGMRKLLILYASQTGNALDAAERLSREAERRACPFNLLSVDQYDPSLLPQEEAVIFVVSTTGQGDTPDSMKVFWRYLLQRNLGQRWLSGVLYAVFGLGDSSYQKYNFVAKKLDKRLMDLGGTTIVERGLGDDQHPSGYEASLDPWLSSLWRMLNMVKPEFLPNGPDVVIQDTVLIDQPKVRITYHNIANDESHFSSASDLTCLNMQIGSARSMHPGKSSSDRSRPGCFLKMVKNLPLTRSNCGKDVRHFEFEFVSHVLKYETGDVLEVLPGQDSAAVDAFIRRCNLDPDSFITVSLREMDDHNTHDSRIPVKLRTFVEFSMDVASASPRRYLFEVMSFFATAEHERERLKYFASPEGRDDLYQYNQKERRTVLEVLEDFPSVQMPFEWLVQLVPPLKPRAFSISSSQSAHPNQVHLTVNVVSWTTPYKRKKKGLCSSWLAALDPCDGIHVPTWFHKGLLPTPSPSLPLILVGPGTGCAPFRGFIEERAVQSRTNSTAPIIFFFGCWNEDGDFLYRDFWLSHSQNKGVLSEAKGGGFYVAFSRDQPQKVYVQHKMREQSQRIWNLLAEGAAVYIAGSSTKMPADVTSAFEEIVSYENEVSAEDAVRWIRALEKCGKFHIEAWS*

>Glyma.18g297800.2.p sequence-type=predicted peptide transcript=Glyma.18g297800.2 locus=Glyma.18g297800 ID=Glyma.18g297800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDLGGTTIVERGLGDDQHPSGYEASLDPWLSSLWRMLNMVKPEFLPNGPDVVIQDTVLIDQPKVRITYHNIANDESHFSSASDLTCLNMQIGSARSMHPGKSSSDRSRPGCFLKMVKNLPLTRSNCGKDVRHFEFEFVSHVLKYETGDVLEVLPGQDSAAVDAFIRRCNLDPDSFITVSLREMDDHNTHDSRIPVKLRTFVEFSMDVASASPRRYLFEVMSFFATAEHERERLKYFASPEGRDDLYQYNQKERRTVLEVLEDFPSVQMPFEWLVQLVPPLKPRAFSISSSQSAHPNQVHLTVNVVSWTTPYKRKKKGLCSSWLAALDPCDGIHVPTWFHKGLLPTPSPSLPLILVGPGTGCAPFRGFIEERAVQSRTNSTAPIIFFFGCWNEDGDFLYRDFWLSHSQNKGVLSEAKGGGFYVAFSRDQPQKVYVQHKMREQSQRIWNLLAEGAAVYIAGSSTKMPADVTSAFEEIVSYENEVSAEDAVRWIRALEKCGKFHIEAWS*






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