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Report for Sequence Feature Glyma.18g296600

Feature Type:gene_model
Chromosome:Gm18
Start:57386246
stop:57389989
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.18g296600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G67080.1AT abscisic acid (aba)-deficient 4 JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
CAROTENOID-PWYSoyCyc9 superpathway of carotenoid biosynthesis in plants Plant Metabolic Network ISS
PWY-6809SoyCyc9 neoxanthin biosynthesis Plant Metabolic Network ISS
PWY-695SoyCyc9 abscisic acid biosynthesis Plant Metabolic Network ISS
GN7V-67070SoyCyc9-rxn neoxanthin synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.18g296600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.18g296600
ParalogEvidenceComments
Glyma.08g365700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.18g296600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma18g53400 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.18g296600
>Glyma.18g296600.2 sequence-type=transcript locus=Glyma.18g296600 ID=Glyma.18g296600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGAGAATGTGCAAAGATCAAAGAATGCTTTGAAGGTGCCAATTTCGGTCACTCTTCATTCATACATGAAGAAGTGACCACTGTTGCTGAATCAGTTATTCCTTCAATCATGTATTTCTCTTCTTGCTTTTCCCATTCTCCATTGACACTCAAGGCTATGAAACCTTGTGGTTCTGTTGGGAAGGGGAAAAATTTTGCTTTCCCTATCAGAAGTAATGGTGCTGAGCTTTGTGACGGACACATTGTGAGAAGTAGAGTCAACTTAAGCGGAGATTGGAGTTTCATAGGAGGATCCAGAATTATTGTGAAACCAAAAGCTACAAGATTGCTTCTTCATTATCCAAAAAGGGGTCAAATGCAAGCTTCATGCTTCATAGGATCTCAACTCGCTAGCACTGTATTTACAGTAGGAACAATAGCAGTGCTCCCATTTTACACACTCATGGTTCTAGCTCCAAAATCTGAACTAACCAAGAAGTCCATGGAGAGTAGTATACCTTATGTAGTGCTTAGCATTCTATATGCATATTTATTGTACCTTTCTTGGACCCCTGAGACAGTTCGGTTGATTTTTGCAAGTAAATACTTGCTACCAGAGCTGGCTGGTATAGCAAAAATGTTCTCCAGTGAAATGACTTTGGCCTCTGCCTGGATTCACCTGTTGGTTGTTGATCTTTTTGCTGCAAGGCATATTTTCCAAGATGGACTGAAGAATCAGATTGAAACTCGGCATTCTGTTTCTTTTTGCTTGTTTTTTTGCCCCATTGGGATTCTTACTCATGTCATCACCAAATCCATGACCAAACCTGCCAGAAAGGAGGGTCATGGTTTATAGAAGAAATCTGCTTTCATTGAGGCAAACTAGGATTTCATTTCAAGTTTGAGAATTTGAGGAACTCATGTTTGAGTTGAAGTTACTTGTAAATGTTCAAGGGTACTTCATATCTGTCACAAGGTGCCCAAAGGGCAATTGAAATATATGGAAAAAAAAGGAGTAACTAACAATTTTATTATACATTGGAAACAATTAGGAAACTTAAT

>Glyma.18g296600.3 sequence-type=transcript locus=Glyma.18g296600 ID=Glyma.18g296600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGCTTTCATTTATACTATACATGTTAAAAAAAAAATCCATTTAAGGTTGTACTGCTAATTTCTGTTAGCTTTCACTGCCTTTACTTGTTTGGTTTGAGACTTTGAGTTGCTCTTTCCTTCCTTACATACAATTCCAACTATTTGAGTTTGAGTTCCTCACTTCTCTCCAATGCTCCGCTGAGTTGTTTTTTTCTCTTCTCCAGTGCCAATTTCGGTCACTCTTCATTCATACATGAAGAAGTGACCACTGTTGCTGAATCAGTTATTCCTTCAATCATGTATTTCTCTTCTTGCTTTTCCCATTCTCCATTGACACTCAAGGCTATGAAACCTTGTGGTTCTGTTGGGAAGGGGAAAAATTTTGCTTTCCCTATCAGAAGTAATGGTGCTGAGCTTTGTGACGGACACATTGTGAGAAGTAGAGTCAACTTAAGCGGAGATTGGAGTTTCATAGGAGGATCCAGAATTATTGTGAAACCAAAAGCTACAAGATTGCTTCTTCATTATCCAAAAAGGGGTCAAATGCAAGCTTCATGCTTCATAGGATCTCAACTCGCTAGCACTGTATTTACAGTAGGAACAATAGCAGTGCTCCCATTTTACACACTCATGGTTCTAGCTCCAAAATCTGAACTAACCAAGAAGTCCATGGAGAGTAGTATACCTTATGTAGTGCTTAGCATTCTATATGCATATTTATTGTACCTTTCTTGGACCCCTGAGACAGTTCGGTTGATTTTTGCAAGTAAATACTTGCTACCAGAGCTGGCTGGTATAGCAAAAATGTTCTCCAGTGAAATGACTTTGGCCTCTGCCTGGATTCACCTGTTGGTTGTTGATCTTTTTGCTGCAAGGTCATTCATTTTATCTTAATCTTGGTTTCTCATTCTTTAATTATTTTTTATGATAGTTATCATGGTTATGAATTCAGGCATATTTTCCAAGATGGACTGAAGAATCAGATTGAAACTCGGCATTCTGTTTCTTTTTGCTTGTTTTTTTGCCCCATTGGGATTCTTACTCATGTCATCACCAAATCCATGACCAAACCTGCCAGAAAGGAGGGTCATGGTTTATAGAAGAAATCTGCTTTCATTGAGGCAAACTAGGATTTCATTTCAAGTTTGAGAATTTGAGGAACTCATGTTTGAGTTGAAGTTACTTGTAAATGTTCAAGGGTACTTCATATCTGTCACAAGGTGCCCAAAGGGCAATTGAAATATATGGAAAAAAAAGGAGTAACTAACAATTTTATTATACATTGGAAACAATTAGGAAACTTAAT
Coding sequences of Glyma.18g296600
>Glyma.18g296600.1 sequence-type=CDS polypeptide=Glyma.18g296600.1.p locus=Glyma.18g296600 ID=Glyma.18g296600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATTTCTCTTCTTGCTTTTCCCATTCTCCATTGACACTCAAGGCTATGAAACCTTGTGGTTCTGTTGGGAAGGGGAAAAATTTTGCTTTCCCTATCAGAAGTAATGGTGCTGAGCTTTGTGACGGACACATTGTGAGAAGTAGAGTCAACTTAAGCGGAGATTGGAGTTTCATAGGAGGATCCAGAATTATTGTGAAACCAAAAGCTACAAGATTGCTTCTTCATTATCCAAAAAGGGGTCAAATGCAAGCTTCATGCTTCATAGGATCTCAACTCGCTAGCACTGTATTTACAGTAGGAACAATAGCAGTGCTCCCATTTTACACACTCATGGTTCTAGCTCCAAAATCTGAACTAACCAAGAAGTCCATGGAGAGTAGTATACCTTATGTAGTGCTTAGCATTCTATATGCATATTTATTGTACCTTTCTTGGACCCCTGAGACAGTTCGGTTGATTTTTGCAAGTAAATACTTGCTACCAGAGCTGGCTGGTATAGCAAAAATGTTCTCCAGTGAAATGACTTTGGCCTCTGCCTGGATTCACCTGTTGGTTGTTGATCTTTTTGCTGCAAGGCATATTTTCCAAGATGGACTGAAGAATCAGATTGAAACTCGGCATTCTGTTTCTTTTTGCTTGTTTTTTTGCCCCATTGGGATTCTTACTCATGTCATCACCAAATCCATGACCAAACCTGCCAGAAAGGAGGGTCATGGTTTATAG

>Glyma.18g296600.2 sequence-type=CDS polypeptide=Glyma.18g296600.2.p locus=Glyma.18g296600 ID=Glyma.18g296600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATTTCTCTTCTTGCTTTTCCCATTCTCCATTGACACTCAAGGCTATGAAACCTTGTGGTTCTGTTGGGAAGGGGAAAAATTTTGCTTTCCCTATCAGAAGTAATGGTGCTGAGCTTTGTGACGGACACATTGTGAGAAGTAGAGTCAACTTAAGCGGAGATTGGAGTTTCATAGGAGGATCCAGAATTATTGTGAAACCAAAAGCTACAAGATTGCTTCTTCATTATCCAAAAAGGGGTCAAATGCAAGCTTCATGCTTCATAGGATCTCAACTCGCTAGCACTGTATTTACAGTAGGAACAATAGCAGTGCTCCCATTTTACACACTCATGGTTCTAGCTCCAAAATCTGAACTAACCAAGAAGTCCATGGAGAGTAGTATACCTTATGTAGTGCTTAGCATTCTATATGCATATTTATTGTACCTTTCTTGGACCCCTGAGACAGTTCGGTTGATTTTTGCAAGTAAATACTTGCTACCAGAGCTGGCTGGTATAGCAAAAATGTTCTCCAGTGAAATGACTTTGGCCTCTGCCTGGATTCACCTGTTGGTTGTTGATCTTTTTGCTGCAAGGCATATTTTCCAAGATGGACTGAAGAATCAGATTGAAACTCGGCATTCTGTTTCTTTTTGCTTGTTTTTTTGCCCCATTGGGATTCTTACTCATGTCATCACCAAATCCATGACCAAACCTGCCAGAAAGGAGGGTCATGGTTTATAG

>Glyma.18g296600.3 sequence-type=CDS polypeptide=Glyma.18g296600.3.p locus=Glyma.18g296600 ID=Glyma.18g296600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTATTTCTCTTCTTGCTTTTCCCATTCTCCATTGACACTCAAGGCTATGAAACCTTGTGGTTCTGTTGGGAAGGGGAAAAATTTTGCTTTCCCTATCAGAAGTAATGGTGCTGAGCTTTGTGACGGACACATTGTGAGAAGTAGAGTCAACTTAAGCGGAGATTGGAGTTTCATAGGAGGATCCAGAATTATTGTGAAACCAAAAGCTACAAGATTGCTTCTTCATTATCCAAAAAGGGGTCAAATGCAAGCTTCATGCTTCATAGGATCTCAACTCGCTAGCACTGTATTTACAGTAGGAACAATAGCAGTGCTCCCATTTTACACACTCATGGTTCTAGCTCCAAAATCTGAACTAACCAAGAAGTCCATGGAGAGTAGTATACCTTATGTAGTGCTTAGCATTCTATATGCATATTTATTGTACCTTTCTTGGACCCCTGAGACAGTTCGGTTGATTTTTGCAAGTAAATACTTGCTACCAGAGCTGGCTGGTATAGCAAAAATGTTCTCCAGTGAAATGACTTTGGCCTCTGCCTGGATTCACCTGTTGGTTGTTGATCTTTTTGCTGCAAGGTCATTCATTTTATCTTAA
Predicted protein sequences of Glyma.18g296600
>Glyma.18g296600.1.p sequence-type=predicted peptide transcript=Glyma.18g296600.1 locus=Glyma.18g296600 ID=Glyma.18g296600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYFSSCFSHSPLTLKAMKPCGSVGKGKNFAFPIRSNGAELCDGHIVRSRVNLSGDWSFIGGSRIIVKPKATRLLLHYPKRGQMQASCFIGSQLASTVFTVGTIAVLPFYTLMVLAPKSELTKKSMESSIPYVVLSILYAYLLYLSWTPETVRLIFASKYLLPELAGIAKMFSSEMTLASAWIHLLVVDLFAARHIFQDGLKNQIETRHSVSFCLFFCPIGILTHVITKSMTKPARKEGHGL*

>Glyma.18g296600.2.p sequence-type=predicted peptide transcript=Glyma.18g296600.2 locus=Glyma.18g296600 ID=Glyma.18g296600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYFSSCFSHSPLTLKAMKPCGSVGKGKNFAFPIRSNGAELCDGHIVRSRVNLSGDWSFIGGSRIIVKPKATRLLLHYPKRGQMQASCFIGSQLASTVFTVGTIAVLPFYTLMVLAPKSELTKKSMESSIPYVVLSILYAYLLYLSWTPETVRLIFASKYLLPELAGIAKMFSSEMTLASAWIHLLVVDLFAARHIFQDGLKNQIETRHSVSFCLFFCPIGILTHVITKSMTKPARKEGHGL*

>Glyma.18g296600.3.p sequence-type=predicted peptide transcript=Glyma.18g296600.3 locus=Glyma.18g296600 ID=Glyma.18g296600.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYFSSCFSHSPLTLKAMKPCGSVGKGKNFAFPIRSNGAELCDGHIVRSRVNLSGDWSFIGGSRIIVKPKATRLLLHYPKRGQMQASCFIGSQLASTVFTVGTIAVLPFYTLMVLAPKSELTKKSMESSIPYVVLSILYAYLLYLSWTPETVRLIFASKYLLPELAGIAKMFSSEMTLASAWIHLLVVDLFAARSFILS*






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